Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G040420 Cucumis sativus L. HOM05D001534 ORTHO05D004495 4.8e-34 147.1 68 100.0
Rhsim06G0224400 Rhododendron simsii HOM05D002795 ORTHO05D003219 2.5e-14 81.6 64 57.8
ClCG09G011120 Citrullus lanatus HOM05D001534 ORTHO05D004495 7.2e-14 80.1 38 100.0
MELO3C013122.2 Cucumis melo HOM05D001534 ORTHO05D004495 7.2e-14 80.1 38 100.0
Sed0022155 Sechium edule HOM05D001534 ORTHO05D004495 1.2e-13 79.3 38 97.4
Sed0022495 Sechium edule HOM05D001534 ORTHO05D004495 2.7e-13 78.2 38 97.4
Glyma.08G322900 Glycine max HOM05D001534 ORTHO05D004495 8.0e-13 76.6 38 92.1
Glyma.18G089300 Glycine max HOM05D001534 ORTHO05D004495 8.0e-13 76.6 38 92.1
MD03G1192100 Malus domestica HOM05D001534 ORTHO05D004495 8.0e-13 76.6 38 92.1
MD11G1208300 Malus domestica HOM05D001534 ORTHO05D004495 8.0e-13 76.6 38 92.1
Prupe.4G225100 Prunus persica HOM05D001534 ORTHO05D004495 8.0e-13 76.6 38 92.1
Lalb_Chr18g0050341 Lupinus albus HOM05D001534 ORTHO05D004495 1.4e-12 75.9 38 89.5
Sc03g0008250 Simmondsia chinensis HOM05D001534 ORTHO05D004495 2.3e-12 75.1 38 89.5
CiPaw.11G195700 Carya illinoinensis HOM05D001534 ORTHO05D004495 3.0e-12 74.7 38 89.5
Lj6g0025719 Lotus japonicus HOM05D001534 ORTHO05D004495 3.0e-12 74.7 38 89.5
Thecc.07G150700 Theobroma cacao HOM05D001534 ORTHO05D004495 3.0e-12 74.7 38 89.5
arahy.Tifrunner.gnm1.ann1.DAYY2D Arachis hypogaea HOM05D001534 ORTHO05D004495 4.0e-12 74.3 38 86.8
CSS0039282 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 4.0e-12 74.3 38 86.8
CiPaw.12G134400 Carya illinoinensis HOM05D001534 ORTHO05D004495 4.0e-12 74.3 38 86.8
COL.COLO4_09746 Corchorus olitorius HOM05D001534 ORTHO05D003503 4.0e-12 74.3 38 86.8
Duzib213G1078 Durio zibethinus HOM05D001534 ORTHO05D004495 4.0e-12 74.3 38 86.8
Duzib268G1739 Durio zibethinus HOM05D001534 ORTHO05D004495 4.0e-12 74.3 38 86.8
Migut.H01785 Erythranthe guttata HOM05D001534 ORTHO05D004495 4.0e-12 74.3 38 89.5
Migut.M01699 Erythranthe guttata HOM05D001534 ORTHO05D004495 4.0e-12 74.3 38 89.5
Eucgr.F00645 Eucalyptus grandis HOM05D001534 ORTHO05D004495 4.0e-12 74.3 38 89.5
LjContig00272g0021661 Lotus japonicus HOM05D001534 ORTHO05D004495 4.0e-12 74.3 38 86.8
Manes.03G135400 Manihot esculenta HOM05D001534 ORTHO05D004495 4.0e-12 74.3 38 86.8
PGR083G1538 Punica granatum HOM05D001534 ORTHO05D004495 4.0e-12 74.3 38 86.8
TAR627G0748 Trochodendron aralioides HOM05D001534 ORTHO05D004495 4.0e-12 74.3 38 86.8
EL10Ac9g20750 Beta vulgaris HOM05D001534 ORTHO05D004495 5.2e-12 73.9 38 86.8
Duzib170G0444 Durio zibethinus HOM05D001534 ORTHO05D004495 5.2e-12 73.9 38 86.8
THA.LOC104811636 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 5.2e-12 73.9 38 86.8
MSTRG.13004 Avicennia marina HOM05D001534 ORTHO05D004495 6.8e-12 73.6 38 86.8
CDE05G1212 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 6.8e-12 73.6 38 86.8
CDE11G0835 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 6.8e-12 73.6 38 84.2
FvH4_3g23660 Fragaria vesca HOM05D001534 ORTHO05D004495 6.8e-12 73.6 38 84.2
FAN11G0198 Fragaria x ananassa HOM05D001534 ORTHO05D004495 6.8e-12 73.6 38 84.2
FAN16G1322 Fragaria x ananassa HOM05D001534 ORTHO05D004495 6.8e-12 73.6 38 84.2
FAN21G0845 Fragaria x ananassa HOM05D001534 ORTHO05D004495 6.8e-12 73.6 38 84.2
FAN25G0400 Fragaria x ananassa HOM05D001534 ORTHO05D004495 6.8e-12 73.6 38 84.2
Nn2g12773 Nelumbo nucifera HOM05D001534 ORTHO05D004495 6.8e-12 73.6 38 86.8
Phvul.006G049200 Phaseolus vulgaris HOM05D001534 ORTHO05D004495 6.8e-12 73.6 38 86.8
RcHm_v2.0_Chr5g0041721 Rosa chinensis HOM05D001534 ORTHO05D004495 6.8e-12 73.6 38 84.2
SGA_v2.0_scaffold168G38510 Striga asiatica HOM05D001534 ORTHO05D004495 8.8e-12 73.2 37 89.2
HanXRQChr03g0076901 Helianthus annuus HOM05D001534 ORTHO05D004495 1.2e-11 72.8 38 86.8
HanXRQChr05g0159691 Helianthus annuus HOM05D001534 ORTHO05D004495 1.2e-11 72.8 38 86.8
A03p14150 Brassica napus HOM05D001534 ORTHO05D004495 1.5e-11 72.4 38 86.8
BraA03t10716Z Brassica rapa HOM05D001534 ORTHO05D004495 1.5e-11 72.4 38 86.8
CSS0048655 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 1.5e-11 72.4 35 94.3
CSS0049003 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 1.5e-11 72.4 35 94.3
CSS0050069 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 1.5e-11 72.4 35 94.3
DCAR_022596 Daucus carota HOM05D001534 ORTHO05D004495 1.5e-11 72.4 38 84.2
ECA246G1860 Erigeron canadensis HOM05D001534 ORTHO05D004495 1.5e-11 72.4 38 84.2
Lsat_1_v5_gn_9_90821 Lactuca sativa HOM05D001534 ORTHO05D004495 1.5e-11 72.4 38 84.2
Medtr5g094130 Medicago truncatula HOM05D001534 ORTHO05D004495 1.5e-11 72.4 38 84.2
SalBow8G1454 Salvia bowleyana HOM05D001534 ORTHO05D004495 1.5e-11 72.4 38 84.2
Actinidia00113 Actinidia chinensis HOM05D001534 ORTHO05D004495 2.0e-11 72.0 38 84.2
Cpa.g.sc12.231 Carica papaya HOM05D001534 ORTHO05D004495 2.0e-11 72.0 38 84.2
Glyma.02G295900 Glycine max HOM05D001534 ORTHO05D004495 2.0e-11 72.0 38 84.2
Glyma.14G017500 Glycine max HOM05D001534 ORTHO05D004495 2.0e-11 72.0 38 84.2
Gohir.A04G011500 Gossypium hirsutum HOM05D001534 ORTHO05D004495 2.0e-11 72.0 38 84.2
Gohir.A08G024400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 2.0e-11 72.0 38 84.2
Gohir.A13G136100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 2.0e-11 72.0 38 84.2
Gohir.D05G375100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 2.0e-11 72.0 38 84.2
Gohir.D08G034900 Gossypium hirsutum HOM05D001534 ORTHO05D004495 2.0e-11 72.0 38 84.2
Gohir.D13G140400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 2.0e-11 72.0 38 84.2
Gorai.004G032800 Gossypium raimondii HOM05D001534 ORTHO05D004495 2.0e-11 72.0 38 84.2
Gorai.009G444000 Gossypium raimondii HOM05D001534 ORTHO05D004495 2.0e-11 72.0 38 84.2
Gorai.013G157000 Gossypium raimondii HOM05D001534 ORTHO05D004495 2.0e-11 72.0 38 84.2
HanXRQChr15g0463351 Helianthus annuus HOM05D001534 ORTHO05D004495 2.6e-11 71.6 38 84.2
CAN.G710.54 Capsicum annuum HOM05D001534 ORTHO05D004495 3.4e-11 71.2 38 84.2
Lsat_1_v5_gn_5_2821 Lactuca sativa HOM05D001534 ORTHO05D004495 3.4e-11 71.2 37 86.5
MBI17_g17518_MAGBIO Magnolia biondii HOM05D001534 ORTHO05D004495 3.4e-11 71.2 38 81.6
Manes.15G065300 Manihot esculenta HOM05D001534 ORTHO05D004495 3.4e-11 71.2 38 81.6
Potri.001G359600 Populus trichocarpa HOM05D001534 ORTHO05D004495 3.4e-11 71.2 38 81.6
Potri.011G092600 Populus trichocarpa HOM05D001534 ORTHO05D004495 3.4e-11 71.2 38 81.6
Solyc09g098440.4 Solanum lycopersicum HOM05D001534 ORTHO05D004495 3.4e-11 71.2 38 84.2
Sopen09g036370 Solanum pennellii HOM05D001534 ORTHO05D004495 3.4e-11 71.2 38 84.2
PGSC0003DMG400021620 Solanum tuberosum HOM05D001534 ORTHO05D004495 3.4e-11 71.2 38 84.2
CAN.G290.7 Capsicum annuum HOM05D001534 ORTHO05D004495 4.4e-11 70.9 38 81.6
Nitab4.5_0006248g0040 Nicotiana tabacum HOM05D001534 ORTHO05D004495 4.4e-11 70.9 38 81.6
Peaxi162Scf00007g00125 Petunia axillaris HOM05D001534 ORTHO05D004495 4.4e-11 70.9 38 81.6
Solyc07g049710.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 4.4e-11 70.9 38 81.6
Solyc12g098720.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 4.4e-11 70.9 38 81.6
Sopen07g025310 Solanum pennellii HOM05D001534 ORTHO05D004495 4.4e-11 70.9 38 81.6
Sopen12g033480 Solanum pennellii HOM05D001534 ORTHO05D004495 4.4e-11 70.9 38 81.6
PGSC0003DMG400001082 Solanum tuberosum HOM05D001534 ORTHO05D004495 4.4e-11 70.9 38 81.6
TPR.G39481 Trifolium pratense HOM05D001534 ORTHO05D004495 4.4e-11 70.9 35 94.3
TWI38G0624 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 4.4e-11 70.9 38 81.6
TWI38G1361 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 4.4e-11 70.9 38 81.6
TWI39G1192 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 4.4e-11 70.9 38 81.6
vmacro11580 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 4.4e-11 70.9 38 81.6
vmacro22992 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 4.4e-11 70.9 38 81.6
AL7G26120 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 5.7e-11 70.5 38 81.6
CARHR234330 Cardamine hirsuta HOM05D001534 ORTHO05D004495 5.7e-11 70.5 38 81.6
Thhalv10026732m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 5.7e-11 70.5 38 81.6
FvH4_3g01010 Fragaria vesca HOM05D001534 ORTHO05D004495 5.7e-11 70.5 38 81.6
Nitab4.5_0002313g0070 Nicotiana tabacum HOM05D001534 ORTHO05D004495 5.7e-11 70.5 38 84.2
Sp7g24710 Schrenkiella parvula HOM05D001534 ORTHO05D004495 5.7e-11 70.5 38 81.6
THA.LOC104817690 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 5.7e-11 70.5 38 84.2
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 7.5e-11 70.1 37 83.8
Haze_09755 Corylus avellana HOM05D001534 ORTHO05D004495 7.5e-11 70.1 38 84.2
Nitab4.5_0006519g0060 Nicotiana tabacum HOM05D001534 ORTHO05D004495 7.5e-11 70.1 38 78.9
GSVIVG01037739001 Vitis vinifera HOM05D001534 ORTHO05D004495 7.5e-11 70.1 38 81.6
AL8G30834 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 9.8e-11 69.7 38 78.9
AT5G55290 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 9.8e-11 69.7 38 78.9
CANSAT35G0060 Cannabis sativa HOM05D001534 ORTHO05D004495 9.8e-11 69.7 38 78.9
CANSAT78G2243 Cannabis sativa HOM05D001534 ORTHO05D004495 9.8e-11 69.7 38 78.9
Carub.0008s1562 Capsella rubella HOM05D001534 ORTHO05D004495 9.8e-11 69.7 38 78.9
MD10G1331400 Malus domestica HOM05D001534 ORTHO05D004495 9.8e-11 69.7 38 81.6
Sp6g17210 Schrenkiella parvula HOM05D001534 ORTHO05D004495 1.3e-10 69.3 38 78.9
BcaC07g38243 Brassica carinata HOM05D001534 ORTHO05D004495 1.7e-10 68.9 38 78.9
A08p20740 Brassica napus HOM05D001534 ORTHO05D004495 1.7e-10 68.9 38 78.9
C07p55180 Brassica napus HOM05D001534 ORTHO05D004495 1.7e-10 68.9 38 78.9
C08p09920 Brassica napus HOM05D001534 ORTHO05D004495 1.7e-10 68.9 38 78.9
BolC7t45994H Brassica oleracea HOM05D001534 ORTHO05D004495 1.7e-10 68.9 38 78.9
BolC8t48669H Brassica oleracea HOM05D001534 ORTHO05D004495 1.7e-10 68.9 38 78.9
BraA03t14757Z Brassica rapa HOM05D001534 ORTHO05D004495 1.7e-10 68.9 38 78.9
BraA08t34028Z Brassica rapa HOM05D001534 ORTHO05D004495 1.7e-10 68.9 38 78.9
DCAR_002221 Daucus carota HOM05D001534 ORTHO05D004495 1.7e-10 68.9 38 78.9
Hma1.2p1_0036F.1_g023010 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 1.7e-10 68.9 36 83.3
Nitab4.5_0000130g0260 Nicotiana tabacum HOM05D001534 ORTHO05D004495 1.7e-10 68.9 38 78.9
Prupe.4G010800 Prunus persica HOM05D001534 ORTHO05D004495 1.7e-10 68.9 38 78.9
RcHm_v2.0_Chr5g0001541 Rosa chinensis HOM05D001534 ORTHO05D004495 1.7e-10 68.9 38 78.9
SEGI_41454 Sequoiadendron giganteum HOM05D001534 ORTHO05D004495 1.7e-10 68.9 38 76.3
AT4G26710 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 2.2e-10 68.6 38 78.9
Carub.0007s1413 Capsella rubella HOM05D001534 ORTHO05D004495 2.2e-10 68.6 38 78.9
CARHR268660 Cardamine hirsuta HOM05D001534 ORTHO05D004495 2.2e-10 68.6 38 78.9
Thhalv10015209m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 2.2e-10 68.6 38 78.9
PSO210G6816 Papaver somniferum HOM05D001534 ORTHO05D004495 2.2e-10 68.6 36 83.3
PSO302G0069 Papaver somniferum HOM05D001534 ORTHO05D004495 2.2e-10 68.6 36 83.3
BcaB05g22197 Brassica carinata HOM05D001534 ORTHO05D004495 2.8e-10 68.2 38 76.3
BcaC03g14248 Brassica carinata HOM05D001534 ORTHO05D004495 2.8e-10 68.2 38 76.3
A02p09760 Brassica napus HOM05D001534 ORTHO05D004495 2.8e-10 68.2 38 76.3
C02p16290 Brassica napus HOM05D001534 ORTHO05D004495 2.8e-10 68.2 38 76.3
BolC2t07730H Brassica oleracea HOM05D001534 ORTHO05D004495 2.8e-10 68.2 38 76.3
BraA02t06040Z Brassica rapa HOM05D001534 ORTHO05D004495 2.8e-10 68.2 38 76.3
Ciclev10010112m.g Citrus clementina HOM05D001534 ORTHO05D004495 2.8e-10 68.2 38 81.6
GSVIVG01003348001 Vitis vinifera HOM05D001534 ORTHO05D004495 2.8e-10 68.2 38 81.6
C01p22800 Brassica napus HOM05D001534 ORTHO05D004495 3.7e-10 67.8 38 76.3
BolC1t02210H Brassica oleracea HOM05D001534 ORTHO05D004495 3.7e-10 67.8 38 76.3
Cc05_g14430 Coffea canephora HOM05D001534 ORTHO05D004495 3.7e-10 67.8 36 83.3
MD05G1357400 Malus domestica HOM05D001534 ORTHO05D004495 3.7e-10 67.8 38 78.9
FAN21G0767 Fragaria x ananassa HOM05D001534 ORTHO05D004495 4.8e-10 67.4 38 76.3
TPR.G18335 Trifolium pratense HOM05D001534 ORTHO05D004495 6.3e-10 67.0 35 85.7
A01p17980 Brassica napus HOM05D001534 ORTHO05D004495 8.3e-10 66.6 36 77.8
BraA01t01753Z Brassica rapa HOM05D001534 ORTHO05D004495 8.3e-10 66.6 36 77.8
Eucgr.F03511 Eucalyptus grandis HOM05D001534 ORTHO05D004495 8.3e-10 66.6 40 80.0
Os04g0660600 Oryza sativa ssp. japonica HOM05D001534 ORTHO05D004495 8.3e-10 66.6 35 85.7
GSVIVG01003343001 Vitis vinifera HOM05D001534 ORTHO05D004495 1.4e-09 65.9 38 78.9
BcaC06g32730 Brassica carinata HOM05D001534 ORTHO05D004495 1.8e-09 65.5 38 73.7
TPR.G30643 Trifolium pratense HOM05D001534 ORTHO05D004495 2.4e-09 65.1 35 82.9
PGR031G2647 Punica granatum HOM05D001534 ORTHO05D004495 3.1e-09 64.7 38 78.9
Zm00001eb269510 Zea mays HOM05D001534 ORTHO05D004495 4.5e-08 60.8 35 82.9
SMO139G0082 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 2.3e-07 58.5 38 68.4
SMO197G0080 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 5.0e-07 57.4 35 68.6


User provided reference genes

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