Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G038500 Cucumis sativus L. HOM05D006444 ORTHO05D007748 2.6e-186 655.2 328 100.0
MELO3C015276.2 Cucumis melo HOM05D006444 ORTHO05D007748 3.0e-166 588.6 328 89.3
ClCG03G017520 Citrullus lanatus HOM05D006444 ORTHO05D007748 6.5e-145 517.7 326 79.8
Sed0009356 Sechium edule HOM05D006444 ORTHO05D007748 1.0e-134 483.8 326 74.8
Haze_04092 Corylus avellana HOM05D006444 ORTHO05D007748 1.8e-102 376.7 329 57.8
Dinv30860 Davidia involucrata HOM05D006444 ORTHO05D007748 4.6e-98 362.1 328 57.3
QL03p017976 Quercus lobata HOM05D006444 ORTHO05D007748 1.5e-96 357.1 327 55.4
Ciclev10001747m.g Citrus clementina HOM05D006444 ORTHO05D007748 7.3e-96 354.8 330 56.7
COL.COLO4_04127 Corchorus olitorius HOM05D006444 ORTHO05D007748 6.2e-95 351.7 327 54.7
Sabra05G0026600 Salix brachista HOM05D006444 ORTHO05D007748 4.0e-94 349.0 328 55.2
PGR031G3221 Punica granatum HOM05D006444 ORTHO05D007748 6.9e-94 348.2 328 53.7
Glyma.19G230000 Glycine max HOM05D006444 ORTHO05D007748 9.0e-94 347.8 327 53.5
Rhsim11G0093000 Rhododendron simsii HOM05D006444 ORTHO05D007748 9.0e-94 347.8 328 56.4
Potri.005G020600 Populus trichocarpa HOM05D006444 ORTHO05D007748 1.5e-93 347.1 328 54.6
Glyma.03G233000 Glycine max HOM05D006444 ORTHO05D007748 2.0e-93 346.7 327 53.8
Thecc.05G319500 Theobroma cacao HOM05D006444 ORTHO05D007748 3.4e-93 345.9 329 55.6
CiPaw.07G026800 Carya illinoinensis HOM05D006444 ORTHO05D007748 4.5e-93 345.5 316 55.7
arahy.Tifrunner.gnm1.ann1.T18680 Arachis hypogaea HOM05D006444 ORTHO05D007748 7.6e-93 344.7 327 53.8
Phvul.001G226600 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 6.4e-92 341.7 327 52.6
arahy.Tifrunner.gnm1.ann1.I0464U Arachis hypogaea HOM05D006444 ORTHO05D007748 1.2e-90 337.4 327 52.6
vmacro01541 Vaccinium macrocarpon HOM05D006444 ORTHO05D007748 1.2e-90 337.4 328 54.0
Manes.09G174800 Manihot esculenta HOM05D006444 ORTHO05D007748 3.5e-90 335.9 329 53.5
Lalb_Chr18g0045971 Lupinus albus HOM05D006444 ORTHO05D007748 6.0e-90 335.1 328 51.8
TPR.G1652 Trifolium pratense HOM05D006444 ORTHO05D007748 1.7e-89 333.6 327 51.7
GSVIVG01031202001 Vitis vinifera HOM05D006444 ORTHO05D007748 8.7e-89 331.3 328 51.2
Prupe.6G316100 Prunus persica HOM05D006444 ORTHO05D007748 1.1e-88 330.9 330 52.4
CSS0047685 Camellia sinensis var. sinensis HOM05D006444 ORTHO05D007748 5.6e-88 328.6 329 53.2
VMungo1383G3166 Vigna mungo HOM05D006444 ORTHO05D007748 7.4e-88 328.2 327 50.8
Gohir.A08G207200 Gossypium hirsutum HOM05D006444 ORTHO05D007748 2.8e-87 326.2 326 52.1
Cc10_g14110 Coffea canephora HOM05D006444 ORTHO05D007748 1.1e-86 324.3 329 52.9
Gorai.004G237700 Gossypium raimondii HOM05D006444 ORTHO05D007748 1.4e-86 323.9 326 51.8
Gohir.D08G223800 Gossypium hirsutum HOM05D006444 ORTHO05D007748 5.3e-86 322.0 326 51.8
Eucgr.H03280 Eucalyptus grandis HOM05D006444 ORTHO05D007748 1.2e-85 320.9 328 51.5
Ca_09322_v3 Cicer arietinum L. HOM05D006444 ORTHO05D007748 1.5e-85 320.5 327 51.4
Medtr7g112320 Medicago truncatula HOM05D006444 ORTHO05D007748 2.0e-85 320.1 327 50.8
Hma1.2p1_0472F.1_g159820 Hydrangea macrophylla HOM05D006444 ORTHO05D007748 9.9e-85 317.8 348 52.3
TAR365G0240 Trochodendron aralioides HOM05D006444 ORTHO05D007748 1.7e-84 317.0 355 51.3
Atru.chr2.132 Acer truncatum HOM05D006444 ORTHO05D007748 3.8e-84 315.8 327 52.3
Lj1g0016861 Lotus japonicus HOM05D006444 ORTHO05D007748 1.9e-83 313.5 338 50.6
FAN02G1429 Fragaria x ananassa HOM05D006444 ORTHO05D007748 4.2e-83 312.4 329 50.8
Nitab4.5_0014337g0020 Nicotiana tabacum HOM05D006444 ORTHO05D007748 1.2e-82 310.8 329 52.0
MSTRG.20391 Avicennia marina HOM05D006444 ORTHO05D007748 4.6e-82 308.9 323 52.0
FvH4_6g07110 Fragaria vesca HOM05D006444 ORTHO05D007748 4.6e-82 308.9 329 50.5
FAN14G0724 Fragaria x ananassa HOM05D006444 ORTHO05D007748 4.6e-82 308.9 329 50.5
FAN05G1290 Fragaria x ananassa HOM05D006444 ORTHO05D007748 6.0e-82 308.5 329 50.5
Nitab4.5_0002715g0070 Nicotiana tabacum HOM05D006444 ORTHO05D007748 6.0e-82 308.5 329 52.0
Peaxi162Scf00073g00128 Petunia axillaris HOM05D006444 ORTHO05D007748 1.3e-81 307.4 331 51.7
Nn4g25689 Nelumbo nucifera HOM05D006444 ORTHO05D007748 8.7e-81 304.7 340 48.8
RcHm_v2.0_Chr3g0456691 Rosa chinensis HOM05D006444 ORTHO05D007748 8.7e-81 304.7 329 49.5
Cpa.g.sc48.132 Carica papaya HOM05D006444 ORTHO05D007748 2.5e-80 303.1 374 45.7
TWI56G1276 Tripterygium wilfordii HOM05D006444 ORTHO05D007748 2.5e-80 303.1 328 50.6
Sopen01g043670 Solanum pennellii HOM05D006444 ORTHO05D007748 4.8e-79 298.9 328 51.2
Oeu045894.1 Olea europaea HOM05D006444 ORTHO05D007748 8.1e-79 298.1 317 50.2
Hund21734 Selenicereus undatus HOM05D006444 ORTHO05D007748 6.9e-78 295.0 333 48.6
Lsat_1_v5_gn_7_73840 Lactuca sativa HOM05D006444 ORTHO05D007748 9.0e-78 294.7 330 47.3
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 1.2e-77 294.3 318 49.7
PGSC0003DMG400024779 Solanum tuberosum HOM05D006444 ORTHO05D007748 2.0e-77 293.5 355 48.2
CANSAT54G2069 Cannabis sativa HOM05D006444 ORTHO05D007748 3.8e-76 289.3 329 49.8
CAN.G1273.16 Capsicum annuum HOM05D006444 ORTHO05D007748 6.5e-76 288.5 361 46.8
Phvul.007G199800 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 6.5e-76 288.5 296 49.3
Nn3g21596 Nelumbo nucifera HOM05D006444 ORTHO05D007748 8.4e-76 288.1 312 49.0
Migut.B00986 Erythranthe guttata HOM05D006444 ORTHO05D007748 1.1e-75 287.7 344 48.8
Glyma.10G148900 Glycine max HOM05D006444 ORTHO05D007748 1.1e-75 287.7 327 46.2
Lj5A342G70 Lonicera japonica HOM05D006444 ORTHO05D007748 3.2e-75 286.2 275 57.8
Oeu028007.2 Olea europaea HOM05D006444 ORTHO05D007748 7.1e-75 285.0 336 47.9
VMungo0720G1741 Vigna mungo HOM05D006444 ORTHO05D007748 5.1e-73 278.9 285 49.1
ATR0706G081 Amborella trichopoda HOM05D006444 ORTHO05D007748 9.6e-72 274.6 308 46.8
HanXRQChr15g0495151 Helianthus annuus HOM05D006444 ORTHO05D007748 9.6e-72 274.6 333 47.1
EL10Ac4g09842 Beta vulgaris HOM05D006444 ORTHO05D007748 2.8e-71 273.1 337 47.8
THA.LOC104818740 Tarenaya hassleriana HOM05D006444 ORTHO05D007748 5.3e-70 268.9 331 47.4
ECA236G3124 Erigeron canadensis HOM05D006444 ORTHO05D007748 5.9e-69 265.4 318 45.6
PSO357G0038 Papaver somniferum HOM05D006444 ORTHO05D007748 1.7e-68 263.8 318 45.9
Sp2g21090 Schrenkiella parvula HOM05D006444 ORTHO05D007748 2.9e-68 263.1 326 46.0
PSO170G3086 Papaver somniferum HOM05D006444 ORTHO05D007748 3.8e-68 262.7 318 45.9
SGA_v2.0_scaffold4G01962 Striga asiatica HOM05D006444 ORTHO05D007748 1.4e-67 260.8 339 46.9
SalBow7G4019 Salvia bowleyana HOM05D006444 ORTHO05D007748 1.2e-66 257.7 316 44.6
AUR62000705 Chenopodium quinoa HOM05D006444 ORTHO05D007748 2.7e-66 256.5 301 48.8
AUR62005256 Chenopodium quinoa HOM05D006444 ORTHO05D007748 6.1e-66 255.4 301 48.8
A06p37110 Brassica napus HOM05D006444 ORTHO05D007748 7.9e-66 255.0 326 45.4
BraA06t26637Z Brassica rapa HOM05D006444 ORTHO05D007748 7.9e-66 255.0 326 45.4
Psat3g013840 Pisum sativum HOM05D006444 ORTHO05D007748 1.0e-65 254.6 255 51.0
BolC7t44660H Brassica oleracea HOM05D006444 ORTHO05D007748 2.3e-65 253.4 326 44.5
CDE09G1197 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 8.7e-65 251.5 201 61.2
Aa31LG11G9750 Aethionema arabicum HOM05D006444 ORTHO05D007748 1.9e-64 250.4 331 45.6
Aqoxy2G02847 Aquilegia oxysepala HOM05D006444 ORTHO05D007748 7.4e-64 248.4 351 42.5
Duzib151G0636 Durio zibethinus HOM05D006444 ORTHO05D007748 9.7e-64 248.1 340 42.4
CARHR186630 Cardamine hirsuta HOM05D006444 ORTHO05D007748 1.6e-63 247.3 328 42.7
Thhalv10004624m.g Eutrema salsugineum HOM05D006444 ORTHO05D007748 1.6e-63 247.3 331 44.1
Thecc.04G293900 Theobroma cacao HOM05D006444 ORTHO05D007748 8.2e-63 245.0 280 46.4
Ciclev10005435m.g Citrus clementina HOM05D006444 ORTHO05D007748 1.5e-61 240.7 274 46.4
C07p41320 Brassica napus HOM05D006444 ORTHO05D007748 2.0e-61 240.4 351 41.3
Carub.0006s2458 Capsella rubella HOM05D006444 ORTHO05D007748 5.9e-61 238.8 329 42.6
Prupe.1G126500 Prunus persica HOM05D006444 ORTHO05D007748 2.2e-60 236.9 213 56.3
CDE02G1332 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 2.9e-60 236.5 262 48.9
unitig_46.g18373 Utricularia gibba HOM05D006444 ORTHO05D007748 1.1e-59 234.6 334 44.6
AT5G26940 Arabidopsis thaliana HOM05D006444 ORTHO05D007748 5.5e-59 232.3 326 42.3
AL6G38850 Arabidopsis lyrata HOM05D006444 ORTHO05D007748 9.4e-59 231.5 324 42.6
Hund21730 Selenicereus undatus HOM05D006444 ORTHO05D007748 1.6e-58 230.7 200 59.0
Sc16g0008870 Simmondsia chinensis HOM05D006444 ORTHO05D007748 8.8e-57 224.9 258 47.3
MD13G1159900 Malus domestica HOM05D006444 ORTHO05D007748 1.7e-55 220.7 238 48.3
HPP92_011867 Vanilla planifolia HOM05D006444 ORTHO05D007748 1.4e-54 217.6 264 45.1
RcHm_v2.0_Chr4g0424201 Rosa chinensis HOM05D006444 ORTHO05D007748 1.8e-54 217.2 258 47.3
Zm00001eb014130 Zea mays HOM05D006444 ORTHO05D007748 1.5e-53 214.2 312 39.1
MBI19_g14287_MAGBIO Magnolia biondii HOM05D006444 ORTHO05D007748 2.2e-52 210.3 240 47.5
Os03g0301400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 8.5e-52 208.4 303 42.6
AagrBONN_evm.TU.Sc2ySwM_344.4230 Anthoceros agrestis HOM05D006444 ORTHO05D007748 1.1e-46 191.4 197 51.8
Os04g0623400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 6.5e-44 182.2 198 47.0
FAN07G1328 Fragaria x ananassa HOM05D006444 ORTHO05D007748 8.5e-44 181.8 204 49.0
Mapoly0162s0013 Marchantia polymorpha HOM05D006444 ORTHO05D007748 1.8e-41 174.1 203 45.8
Actinidia35534 Actinidia chinensis HOM05D006444 ORTHO05D007748 6.7e-41 172.2 208 46.2
FvH4_4g19220 Fragaria vesca HOM05D006444 ORTHO05D007748 2.0e-40 170.6 202 46.5
TAR362G0047 Trochodendron aralioides HOM05D006444 ORTHO05D007748 3.3e-40 169.9 203 45.3
MD12G1208900 Malus domestica HOM05D006444 ORTHO05D007748 8.2e-39 165.2 177 49.2
SMO116G0265 Selaginella moellendorffii HOM05D006444 ORTHO05D007748 2.4e-38 163.7 243 38.3
FAN12G0061 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.1e-38 163.3 202 45.5
FAN12G3514 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.3e-36 157.9 203 45.3
MD12G1209000 Malus domestica HOM05D006444 ORTHO05D007748 1.1e-35 154.8 135 59.3
SEGI_10576 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 2.1e-34 150.6 157 50.3
FAN09G3591 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.4e-32 143.3 140 53.6
Pp3c18_14120 Physcomitrium patens HOM05D001061 ORTHO05D007748 2.8e-31 140.2 193 39.4
Atru.chr4.2940 Acer truncatum HOM05D006444 ORTHO05D007748 5.5e-27 125.9 113 51.3
MCO01G157 Micromonas commoda HOM05D005236 ORTHO05D006557 5.7e-24 115.9 179 36.9
Actinidia35535 Actinidia chinensis HOM05D006444 ORTHO05D007748 2.3e-17 94.0 81 60.5
EL10Ac4g09387 Beta vulgaris HOM05D006444 ORTHO05D007748 9.2e-14 82.0 86 52.3
PRCOL_00002449 Prasinoderma coloniale HOM05D005236 ORTHO05D006557 3.9e-12 76.6 201 29.4


User provided reference genes

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