Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G030150 Cucumis sativus L. HOM05D001528 ORTHO05D006464 5.3e-69 264.2 133 100.0
MELO3C025757.2 Cucumis melo HOM05D001528 ORTHO05D006464 1.2e-15 87.0 49 81.6
CsaV3_1G025560 Cucumis sativus L. HOM05D000088 ORTHO05D000933 4.4e-15 85.1 63 69.8
ClCG02G021020 Citrullus lanatus HOM05D001528 ORTHO05D006464 7.5e-15 84.3 49 77.6
CsaV3_6G021710 Cucumis sativus L. HOM05D001528 ORTHO05D006464 9.8e-15 84.0 49 77.6
Sed0027444 Sechium edule HOM05D001528 ORTHO05D006464 1.3e-14 83.6 49 77.6
Thecc.09G258900 Theobroma cacao HOM05D001528 ORTHO05D006464 1.3e-14 83.6 49 75.5
CsaV3_3G023670 Cucumis sativus L. HOM05D000088 ORTHO05D000933 8.3e-14 80.9 63 68.3
Gohir.A09G106300 Gossypium hirsutum HOM05D001528 ORTHO05D006464 8.3e-14 80.9 46 76.1
Duzib168G0357 Durio zibethinus HOM05D001528 ORTHO05D006464 1.4e-13 80.1 49 71.4
Pp3c16_2020 Physcomitrium patens HOM05D001528 ORTHO05D006464 1.4e-13 80.1 80 51.2
CANSAT54G0682 Cannabis sativa HOM05D001528 ORTHO05D006464 1.8e-13 79.7 49 73.5
Gohir.D09G103000 Gossypium hirsutum HOM05D001528 ORTHO05D006464 1.8e-13 79.7 46 73.9
AT3G45300 Arabidopsis thaliana HOM05D001528 ORTHO05D006464 2.4e-13 79.3 98 45.9
CiPaw.14G078300 Carya illinoinensis HOM05D001528 ORTHO05D006464 2.4e-13 79.3 49 73.5
Dinv32775 Davidia involucrata HOM05D001528 ORTHO05D006464 2.4e-13 79.3 49 73.5
Atru.chr3.3676 Acer truncatum HOM05D001528 ORTHO05D006464 4.1e-13 78.6 46 76.1
Peaxi162Scf00351g00225 Petunia axillaris HOM05D001528 ORTHO05D006464 4.1e-13 78.6 49 73.5
PGR102G2718 Punica granatum HOM05D001528 ORTHO05D006464 4.1e-13 78.6 49 71.4
Gorai.006G120500 Gossypium raimondii HOM05D001528 ORTHO05D006464 7.0e-13 77.8 46 73.9
GSVIVG01025158001 Vitis vinifera HOM05D001528 ORTHO05D006464 7.0e-13 77.8 98 44.9
Manes.11G142200 Manihot esculenta HOM05D001528 ORTHO05D006464 9.2e-13 77.4 56 62.5
Potri.009G011700 Populus trichocarpa HOM05D001528 ORTHO05D006464 9.2e-13 77.4 53 64.2
QL01p023217 Quercus lobata HOM05D001528 ORTHO05D006464 9.2e-13 77.4 49 71.4
SEGI_37451 Sequoiadendron giganteum HOM05D001528 ORTHO05D006464 9.2e-13 77.4 50 66.0
Aa31LG4G14610 Aethionema arabicum HOM05D001528 ORTHO05D006464 1.2e-12 77.0 98 45.9
ATR0314G031 Amborella trichopoda HOM05D001528 ORTHO05D006464 1.2e-12 77.0 45 75.6
CARHR150590 Cardamine hirsuta HOM05D001528 ORTHO05D006464 1.2e-12 77.0 98 46.9
CAN.G631.6 Capsicum annuum HOM05D001528 ORTHO05D006464 1.6e-12 76.6 46 73.9
Cpa.g.sc139.79 Carica papaya HOM05D001528 ORTHO05D006464 1.6e-12 76.6 49 71.4
Mapoly0079s0031 Marchantia polymorpha HOM05D001528 ORTHO05D006464 1.6e-12 76.6 94 46.8
Peaxi162Scf00973g00317 Petunia axillaris HOM05D001528 ORTHO05D006464 1.6e-12 76.6 45 75.6
unitig_747.g22005 Utricularia gibba HOM05D001528 ORTHO05D006464 1.6e-12 76.6 45 75.6
HanXRQChr07g0197391 Helianthus annuus HOM05D001528 ORTHO05D006464 2.0e-12 76.3 49 69.4
EL10Ac9g22484 Beta vulgaris HOM05D001528 ORTHO05D006464 2.7e-12 75.9 45 75.6
Thhalv10002530m.g Eutrema salsugineum HOM05D001528 ORTHO05D006464 2.7e-12 75.9 98 44.9
Nitab4.5_0000650g0010 Nicotiana tabacum HOM05D001528 ORTHO05D006464 2.7e-12 75.9 45 75.6
Nitab4.5_0000999g0110 Nicotiana tabacum HOM05D001528 ORTHO05D006464 2.7e-12 75.9 45 75.6
Prupe.6G097600 Prunus persica HOM05D001528 ORTHO05D006464 2.7e-12 75.9 49 69.4
THA.LOC104799491 Tarenaya hassleriana HOM05D001528 ORTHO05D006464 2.7e-12 75.9 49 67.3
RcHm_v2.0_Chr5g0060041 Rosa chinensis HOM05D001528 ORTHO05D006464 3.5e-12 75.5 49 67.3
BcaB01g01092 Brassica carinata HOM05D001528 ORTHO05D006464 4.5e-12 75.1 95 45.3
BcaC01g01975 Brassica carinata HOM05D001528 ORTHO05D006464 4.5e-12 75.1 95 45.3
A06p21480 Brassica napus HOM05D001528 ORTHO05D002760 4.5e-12 75.1 95 45.3
C03p69900 Brassica napus HOM05D001528 ORTHO05D002760 4.5e-12 75.1 95 45.3
BolC3t19251H Brassica oleracea HOM05D001528 ORTHO05D002760 4.5e-12 75.1 95 45.3
BraA06t25232Z Brassica rapa HOM05D001528 ORTHO05D006464 4.5e-12 75.1 95 45.3
Ciclev10028544m.g Citrus clementina HOM05D001528 ORTHO05D006464 4.5e-12 75.1 49 69.4
MD03G1116100 Malus domestica HOM05D001528 ORTHO05D006464 4.5e-12 75.1 49 69.4
Sp5g16010 Schrenkiella parvula HOM05D001528 ORTHO05D006464 4.5e-12 75.1 95 45.3
SGA_v2.0_scaffold97G29192 Striga asiatica HOM05D001528 ORTHO05D006464 4.5e-12 75.1 45 73.3
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 5.9e-12 74.7 49 69.4
Migut.G00948 Erythranthe guttata HOM05D001528 ORTHO05D006464 5.9e-12 74.7 45 73.3
Eucgr.B02479 Eucalyptus grandis HOM05D001528 ORTHO05D006464 5.9e-12 74.7 49 67.3
FvH4_3g32900 Fragaria vesca HOM05D001528 ORTHO05D006464 5.9e-12 74.7 49 67.3
FAN11G1754 Fragaria x ananassa HOM05D001528 ORTHO05D006464 5.9e-12 74.7 49 67.3
Lsat_1_v5_gn_2_97920 Lactuca sativa HOM05D001528 ORTHO05D006464 5.9e-12 74.7 49 67.3
TAR633G2611 Trochodendron aralioides HOM05D001528 ORTHO05D006464 5.9e-12 74.7 49 65.3
Atru.chr3.3674 Acer truncatum HOM05D001528 ORTHO05D006464 7.8e-12 74.3 72 50.0
Actinidia24085 Actinidia chinensis HOM05D001528 ORTHO05D006464 7.8e-12 74.3 49 67.3
CsaV3_1G043770 Cucumis sativus L. HOM05D000230 ORTHO05D011671 7.8e-12 74.3 39 97.4
Hma1.2p1_0071F.1_g038170 Hydrangea macrophylla HOM05D001528 ORTHO05D006464 7.8e-12 74.3 45 71.1
Lj1A187G24 Lonicera japonica HOM05D001528 ORTHO05D006464 7.8e-12 74.3 46 69.6
MBI15_g19419_MAGBIO Magnolia biondii HOM05D001528 ORTHO05D006464 7.8e-12 74.3 53 64.2
MSTRG.18648 Avicennia marina HOM05D001528 ORTHO05D006464 1.0e-11 73.9 94 45.7
HanXRQChr07g0197401 Helianthus annuus HOM05D001528 ORTHO05D006464 1.0e-11 73.9 49 67.3
AL5G23900 Arabidopsis lyrata HOM05D001528 ORTHO05D006464 1.3e-11 73.6 98 43.9
Aqoxy4G03235 Aquilegia oxysepala HOM05D001528 ORTHO05D006464 1.7e-11 73.2 49 65.3
Oeu059100.1 Olea europaea HOM05D001528 ORTHO05D006464 1.7e-11 73.2 102 42.2
SalBow3G2093 Salvia bowleyana HOM05D001528 ORTHO05D006464 2.3e-11 72.8 45 71.1
TPR.G15539 Trifolium pratense HOM05D001528 ORTHO05D006464 2.3e-11 72.8 66 50.0
Lsat_1_v5_gn_2_97980 Lactuca sativa HOM05D001528 ORTHO05D006464 2.9e-11 72.4 53 58.5
Psat7g223360 Pisum sativum HOM05D001528 ORTHO05D006464 2.9e-11 72.4 53 60.4
Solyc06g073560.4 Solanum lycopersicum HOM05D001528 ORTHO05D006464 2.9e-11 72.4 45 68.9
Sopen06g029920 Solanum pennellii HOM05D001528 ORTHO05D006464 2.9e-11 72.4 45 68.9
PGSC0003DMG400026901 Solanum tuberosum HOM05D001528 ORTHO05D006464 2.9e-11 72.4 45 68.9
Carub.0005s1117 Capsella rubella HOM05D001528 ORTHO05D006464 3.9e-11 72.0 49 65.3
vmacro03181 Vaccinium macrocarpon HOM05D001528 ORTHO05D006464 3.9e-11 72.0 49 65.3
CAN.G65.194 Capsicum annuum HOM05D001528 ORTHO05D006464 5.0e-11 71.6 45 71.1
FAN21G0986 Fragaria x ananassa HOM05D001528 ORTHO05D006464 5.0e-11 71.6 44 70.5
HanXRQChr14g0453001 Helianthus annuus HOM05D001528 ORTHO05D006464 5.0e-11 71.6 49 63.3
Solyc11g069180.2 Solanum lycopersicum HOM05D001528 ORTHO05D006464 5.0e-11 71.6 45 73.3
Sopen11g027920 Solanum pennellii HOM05D001528 ORTHO05D006464 5.0e-11 71.6 45 73.3
CDE09G0354 Ceratophyllum demersum HOM05D001528 ORTHO05D006464 8.6e-11 70.9 49 67.3
HPP92_001045 Vanilla planifolia HOM05D001528 ORTHO05D006464 8.6e-11 70.9 45 66.7
Lj3g0021237 Lotus japonicus HOM05D001528 ORTHO05D006464 1.1e-10 70.5 64 50.0
AagrBONN_evm.TU.Sc2ySwM_228.4591 Anthoceros agrestis HOM05D001528 ORTHO05D006464 1.5e-10 70.1 52 57.7
Ca_19248_v3 Cicer arietinum L. HOM05D001528 ORTHO05D006464 1.5e-10 70.1 53 58.5
Lalb_Chr01g0004201 Lupinus albus HOM05D001528 ORTHO05D006464 1.5e-10 70.1 46 65.2
Medtr4g060480 Medicago truncatula HOM05D001528 ORTHO05D006464 1.5e-10 70.1 53 58.5
TWI75G0049 Tripterygium wilfordii HOM05D001528 ORTHO05D006464 1.5e-10 70.1 49 65.3
Lalb_Chr03g0027181 Lupinus albus HOM05D001528 ORTHO05D006464 1.9e-10 69.7 49 61.2
PGSC0003DMG400008113 Solanum tuberosum HOM05D001528 ORTHO05D006464 1.9e-10 69.7 45 71.1
arahy.Tifrunner.gnm1.ann1.792I4R Arachis hypogaea HOM05D001528 ORTHO05D006464 2.5e-10 69.3 47 61.7
arahy.Tifrunner.gnm1.ann1.C0Z8UU Arachis hypogaea HOM05D001528 ORTHO05D006464 2.5e-10 69.3 47 61.7
arahy.Tifrunner.gnm1.ann1.Q3ZIFI Arachis hypogaea HOM05D001528 ORTHO05D006464 2.5e-10 69.3 47 61.7
FAN25G2184 Fragaria x ananassa HOM05D001528 ORTHO05D006464 2.5e-10 69.3 49 63.3
PSO339G5049 Papaver somniferum HOM05D001528 ORTHO05D006464 2.5e-10 69.3 49 61.2
PSO384G1162 Papaver somniferum HOM05D001528 ORTHO05D006464 2.5e-10 69.3 49 61.2
SMO348G0031 Selaginella moellendorffii HOM05D001528 ORTHO05D006464 2.5e-10 69.3 109 39.4
Os05g0125500 Oryza sativa ssp. japonica HOM05D001528 ORTHO05D006464 3.3e-10 68.9 45 66.7
AUR62006528 Chenopodium quinoa HOM05D001528 ORTHO05D006464 7.3e-10 67.8 49 63.3
Zm00001eb355050 Zea mays HOM05D001528 ORTHO05D006464 1.2e-09 67.0 68 47.1
Cc01_g11420 Coffea canephora HOM05D001528 ORTHO05D006464 1.6e-09 66.6 49 63.3
Glyma.11G154423 Glycine max HOM05D001528 ORTHO05D006464 2.1e-09 66.2 45 66.7
VMungo1127G1219 Vigna mungo HOM05D001528 ORTHO05D006464 2.1e-09 66.2 46 65.2
Glyma.12G071100 Glycine max HOM05D001528 ORTHO05D006464 2.8e-09 65.9 46 65.2
Phvul.011G073500 Phaseolus vulgaris HOM05D001528 ORTHO05D006464 3.6e-09 65.5 46 63.0
Zm00001eb265270 Zea mays HOM05D001528 ORTHO05D006464 1.8e-08 63.2 45 60.0
Rhsim08G0043300 Rhododendron simsii HOM05D001528 ORTHO05D006464 3.4e-07 58.9 76 43.4
Cre06.g296400 Chlamydomonas reinhardtii HOM05D001528 ORTHO05D006464 4.9e-06 55.1 73 41.1


User provided reference genes

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