Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 2.4e-167 592.8 339 100.0
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 1.5e-28 131.7 242 35.1
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 9.9e-28 129.0 260 34.6
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 7.1e-26 122.9 257 32.3
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 1.2e-25 122.1 260 33.1
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 1.2e-25 122.1 290 30.7
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 2.1e-25 121.3 258 31.8
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 2.1e-25 121.3 260 33.1
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 2.7e-25 120.9 235 34.5
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 6.0e-25 119.8 260 32.3
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.0e-24 119.0 258 32.6
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.3e-24 118.6 260 31.5
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 1.3e-24 118.6 232 33.2
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 1.3e-24 118.6 334 30.2
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 2.3e-24 117.9 258 31.0
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 2.3e-24 117.9 273 31.5
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 2.3e-24 117.9 257 31.5
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 2.3e-24 117.9 230 31.3
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 2.3e-24 117.9 230 31.3
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 3.0e-24 117.5 257 31.1
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 3.9e-24 117.1 261 30.7
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 5.1e-24 116.7 259 30.9
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 6.6e-24 116.3 260 30.8
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 6.6e-24 116.3 258 31.0
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 6.6e-24 116.3 232 33.2
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 8.7e-24 115.9 264 31.8
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 1.1e-23 115.5 232 33.2
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 1.1e-23 115.5 258 29.8
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 1.5e-23 115.2 258 31.0
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 1.5e-23 115.2 232 33.2
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 1.9e-23 114.8 212 36.3
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 1.9e-23 114.8 232 32.8
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 1.9e-23 114.8 243 32.9
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 1.9e-23 114.8 273 32.6
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 2.5e-23 114.4 319 28.5
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 3.3e-23 114.0 257 30.4
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 3.3e-23 114.0 257 31.1
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 4.3e-23 113.6 243 32.5
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 4.3e-23 113.6 243 32.5
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 4.3e-23 113.6 243 32.5
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 4.3e-23 113.6 266 33.8
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 4.3e-23 113.6 244 34.0
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 5.6e-23 113.2 258 30.6
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 5.6e-23 113.2 290 29.7
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 5.6e-23 113.2 328 29.9
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 7.3e-23 112.8 232 31.9
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 7.3e-23 112.8 295 29.2
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 7.3e-23 112.8 295 29.2
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 7.3e-23 112.8 232 33.2
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 9.6e-23 112.5 257 31.1
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 9.6e-23 112.5 284 31.0
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 1.3e-22 112.1 232 32.8
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.6e-22 111.7 258 29.8
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 2.1e-22 111.3 229 35.8
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 2.8e-22 110.9 258 31.0
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 2.8e-22 110.9 232 31.9
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 2.8e-22 110.9 326 29.1
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 3.6e-22 110.5 230 32.2
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 3.6e-22 110.5 256 30.9
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 3.6e-22 110.5 232 32.8
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 4.8e-22 110.2 232 33.2
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 6.2e-22 109.8 258 30.6
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 6.2e-22 109.8 274 30.3
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 8.1e-22 109.4 319 28.2
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 1.1e-21 109.0 232 31.9
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 1.1e-21 109.0 305 28.2
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 1.1e-21 109.0 324 27.2
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 1.1e-21 109.0 324 27.2
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 1.1e-21 109.0 291 28.9
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 1.1e-21 109.0 323 28.5
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 1.8e-21 108.2 323 28.2
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 1.8e-21 108.2 323 28.2
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 1.8e-21 108.2 319 29.2
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 1.8e-21 108.2 232 31.9
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.8e-21 108.2 232 31.9
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 1.8e-21 108.2 273 32.2
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.8e-21 108.2 247 32.8
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 2.4e-21 107.8 257 29.2
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 2.4e-21 107.8 232 31.9
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 2.4e-21 107.8 319 27.9
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 3.1e-21 107.5 230 31.3
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 3.1e-21 107.5 257 29.2
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 3.1e-21 107.5 257 29.2
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 3.1e-21 107.5 230 32.6
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 4.0e-21 107.1 256 32.4
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 4.0e-21 107.1 232 31.0
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 4.0e-21 107.1 231 32.0
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 5.3e-21 106.7 204 32.8
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 6.9e-21 106.3 257 28.8
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 6.9e-21 106.3 321 27.7
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 9.0e-21 105.9 337 28.5
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 1.5e-20 105.1 258 29.5
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 2.0e-20 104.8 234 31.6
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 2.0e-20 104.8 256 29.7
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 2.0e-20 104.8 232 31.5
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 3.4e-20 104.0 333 28.8
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 3.4e-20 104.0 318 28.0
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 4.5e-20 103.6 284 28.2
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 4.5e-20 103.6 230 32.2
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 1.3e-19 102.1 340 28.2
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 1.3e-19 102.1 340 28.2
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 1.7e-19 101.7 261 31.0
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 1.7e-19 101.7 317 27.1
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 2.2e-19 101.3 333 28.5
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 2.2e-19 101.3 333 28.5
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.2e-19 101.3 230 30.9
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.9e-19 100.9 199 32.7
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 2.9e-19 100.9 203 33.0
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 2.9e-19 100.9 230 30.9
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 3.8e-19 100.5 221 32.1
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 4.9e-19 100.1 339 28.0
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 8.4e-19 99.4 157 39.5
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 1.4e-18 98.6 230 30.4
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 4.2e-18 97.1 337 26.7
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 4.2e-18 97.1 333 27.6
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 7.9e-17 92.8 339 26.0
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.3e-16 91.3 127 38.6
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 3.9e-16 90.5 338 24.6
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.9e-16 90.5 127 38.6
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 5.1e-16 90.1 199 33.7
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.5e-15 87.8 127 37.8
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.5e-15 87.8 127 37.8
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 3.3e-15 87.4 225 30.7
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 9.6e-15 85.9 254 27.2
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 6.2e-14 83.2 169 33.7
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 1.3e-11 75.5 149 32.9
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 8.4e-11 72.8 93 39.8
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 4.6e-09 67.0 241 25.3
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 8.7e-08 62.8 85 41.2


User provided reference genes

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