Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 1.3e-202 709.9 472 100.0
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 5.5e-20 103.2 263 29.7
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 6.8e-18 96.3 478 27.0
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 4.4e-17 93.6 256 28.1
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 9.8e-17 92.4 257 28.0
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 1.3e-16 92.0 257 29.2
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 1.7e-16 91.7 256 27.7
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 2.2e-16 91.3 283 26.5
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 1.4e-15 88.6 255 27.5
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 1.8e-15 88.2 253 30.8
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 1.8e-15 88.2 302 26.5
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 1.8e-15 88.2 257 28.4
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 2.4e-15 87.8 255 26.3
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 4.1e-15 87.0 255 26.3
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 4.1e-15 87.0 313 28.4
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 5.4e-15 86.7 255 27.5
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 5.4e-15 86.7 261 28.4
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 7.0e-15 86.3 247 27.9
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 7.0e-15 86.3 260 26.2
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 7.0e-15 86.3 256 27.3
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 9.1e-15 85.9 256 28.1
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.2e-14 85.5 256 28.1
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 1.6e-14 85.1 256 27.3
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 2.0e-14 84.7 256 26.6
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 2.0e-14 84.7 255 27.5
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 3.5e-14 84.0 261 26.1
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 3.5e-14 84.0 255 27.1
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 4.5e-14 83.6 260 27.3
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 4.5e-14 83.6 261 26.1
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 5.9e-14 83.2 260 26.2
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 7.7e-14 82.8 259 25.5
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 7.7e-14 82.8 253 26.9
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 1.3e-13 82.0 293 26.3
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 1.3e-13 82.0 256 27.0
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 1.7e-13 81.6 259 25.9
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 1.7e-13 81.6 299 29.8
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 1.7e-13 81.6 256 25.8
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.7e-13 81.6 257 26.5
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 1.7e-13 81.6 255 26.7
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 5.0e-13 80.1 255 26.3
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 5.0e-13 80.1 256 25.4
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 5.0e-13 80.1 296 26.7
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 6.6e-13 79.7 300 27.3
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 8.6e-13 79.3 262 26.0
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 8.6e-13 79.3 296 26.7
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 8.6e-13 79.3 298 27.9
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 8.6e-13 79.3 256 27.7
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 8.6e-13 79.3 300 27.0
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 8.6e-13 79.3 296 26.7
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 1.1e-12 79.0 262 26.0
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 1.1e-12 79.0 255 25.9
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.1e-12 79.0 256 25.4
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 1.1e-12 79.0 262 26.0
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 1.1e-12 79.0 259 26.6
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 1.5e-12 78.6 308 27.9
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 1.9e-12 78.2 255 27.1
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 1.9e-12 78.2 265 25.7
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 4.2e-12 77.0 265 27.2
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 4.2e-12 77.0 265 27.2
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 4.2e-12 77.0 253 26.1
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 4.2e-12 77.0 305 27.5
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 4.2e-12 77.0 293 27.3
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 4.2e-12 77.0 244 26.2
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 5.5e-12 76.6 259 25.1
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 5.5e-12 76.6 298 26.8
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 5.5e-12 76.6 237 27.4
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 7.2e-12 76.3 293 27.3
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 9.5e-12 75.9 299 25.8
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 1.2e-11 75.5 292 26.7
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 1.6e-11 75.1 295 24.1
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 2.8e-11 74.3 318 23.3
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 2.8e-11 74.3 253 27.3
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 2.8e-11 74.3 292 27.1
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 3.6e-11 73.9 384 27.6
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 3.6e-11 73.9 316 24.1
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 6.1e-11 73.2 238 27.3
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 8.0e-11 72.8 368 25.5
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 8.0e-11 72.8 252 27.8
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 1.0e-10 72.4 299 25.8
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 1.4e-10 72.0 301 25.6
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 1.4e-10 72.0 312 29.5
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 3.0e-10 70.9 411 24.3
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 4.0e-10 70.5 264 26.5
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 5.2e-10 70.1 237 27.4
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 6.8e-10 69.7 259 26.6
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.2e-09 68.9 235 26.0
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 1.5e-09 68.6 233 25.8
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 2.0e-09 68.2 263 27.0
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 2.0e-09 68.2 259 25.1
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 2.6e-09 67.8 238 23.9
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 2.6e-09 67.8 236 26.3
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 3.4e-09 67.4 265 27.2
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 3.4e-09 67.4 265 27.2
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 7.5e-09 66.2 280 28.2
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 9.8e-09 65.9 235 25.5
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 1.7e-08 65.1 170 28.2
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 2.2e-08 64.7 226 26.1
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 3.7e-08 63.9 267 24.3
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 3.7e-08 63.9 267 24.3
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 3.7e-08 63.9 172 28.5
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 4.9e-08 63.5 262 24.0
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 1.1e-07 62.4 246 24.0
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.4e-07 62.0 194 29.9
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 2.4e-07 61.2 288 22.2
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 3.2e-07 60.8 425 26.6
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 4.1e-07 60.5 264 23.9
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 4.1e-07 60.5 410 21.7
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 4.1e-07 60.5 375 25.1
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 9.2e-07 59.3 420 27.4
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 1.6e-06 58.5 224 22.8
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 2.0e-06 58.2 430 23.7
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 5.9e-06 56.6 425 25.9
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 7.8e-06 56.2 419 22.9


User provided reference genes

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