Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 8.6e-222 774.2 727 100.0
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 1.5e-16 92.4 176 38.1
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 2.0e-16 92.0 198 37.4
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 7.5e-16 90.1 201 35.3
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 9.8e-16 89.7 130 40.8
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 1.3e-15 89.4 110 42.7
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 1.3e-15 89.4 400 36.5
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 3.7e-15 87.8 193 36.3
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 3.7e-15 87.8 369 27.1
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 6.3e-15 87.0 115 41.7
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 1.4e-14 85.9 168 39.3
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 2.4e-14 85.1 232 33.6
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 3.1e-14 84.7 176 36.9
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 4.1e-14 84.3 231 34.6
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 4.1e-14 84.3 231 34.6
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 7.0e-14 83.6 419 28.4
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 7.0e-14 83.6 156 36.5
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 9.1e-14 83.2 207 34.3
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 9.1e-14 83.2 168 35.7
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 1.2e-13 82.8 205 34.1
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 1.2e-13 82.8 365 28.8
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 3.5e-13 81.3 343 33.5
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 3.5e-13 81.3 156 35.9
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 3.5e-13 81.3 435 28.0
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 4.5e-13 80.9 367 29.4
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 5.9e-13 80.5 202 34.2
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 1.0e-12 79.7 435 27.6
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 1.0e-12 79.7 394 26.9
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 1.0e-12 79.7 367 31.1
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 1.0e-12 79.7 365 35.6
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.3e-12 79.3 186 34.9
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 1.7e-12 79.0 392 29.1
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 1.7e-12 79.0 332 39.5
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 2.2e-12 78.6 367 30.8
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 2.9e-12 78.2 221 33.9
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 5.0e-12 77.4 195 34.9
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 5.0e-12 77.4 227 31.3
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 5.0e-12 77.4 421 34.4
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 6.5e-12 77.0 399 28.3
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 8.5e-12 76.6 366 31.4
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 1.1e-11 76.3 222 35.1
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 1.1e-11 76.3 397 29.0
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 1.5e-11 75.9 208 31.7
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 1.5e-11 75.9 231 32.9
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 1.9e-11 75.5 172 34.9
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 1.9e-11 75.5 472 32.4
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 1.9e-11 75.5 421 38.0
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 1.9e-11 75.5 388 36.3
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 2.5e-11 75.1 367 37.6
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 2.5e-11 75.1 197 33.5
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 3.2e-11 74.7 428 29.2
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 4.2e-11 74.3 172 34.3
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 4.2e-11 74.3 461 23.4
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 4.2e-11 74.3 412 25.7
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 4.2e-11 74.3 398 28.1
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 5.5e-11 73.9 421 38.0
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 5.5e-11 73.9 385 30.1
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 7.2e-11 73.6 421 30.9
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 9.4e-11 73.2 417 30.9
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 9.4e-11 73.2 366 30.9
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 9.4e-11 73.2 399 31.8
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.2e-10 72.8 185 35.7
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 1.6e-10 72.4 195 33.8
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 2.1e-10 72.0 421 37.5
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 2.1e-10 72.0 389 36.5
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 2.7e-10 71.6 406 30.5
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 3.6e-10 71.2 436 28.2
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 3.6e-10 71.2 396 36.4
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 3.6e-10 71.2 450 26.4
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 4.7e-10 70.9 190 32.6
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 6.1e-10 70.5 448 31.7
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 8.0e-10 70.1 366 27.3
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 8.0e-10 70.1 440 33.4
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 1.0e-09 69.7 191 33.5
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 1.0e-09 69.7 436 26.8
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 1.0e-09 69.7 444 29.3
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 1.4e-09 69.3 419 33.2
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 1.4e-09 69.3 204 31.4
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 1.4e-09 69.3 439 32.8
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 1.4e-09 69.3 380 30.5
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 1.8e-09 68.9 419 25.5
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 1.8e-09 68.9 419 25.5
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 1.8e-09 68.9 419 25.5
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 1.8e-09 68.9 419 25.5
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 1.8e-09 68.9 459 29.8
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.8e-09 68.9 459 29.8
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 1.8e-09 68.9 412 30.8
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 1.8e-09 68.9 419 29.6
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 1.8e-09 68.9 363 32.5
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 2.3e-09 68.6 478 27.6
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 2.3e-09 68.6 419 25.5
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 2.3e-09 68.6 437 31.1
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.0e-09 68.2 459 29.6
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 4.0e-09 67.8 429 30.1
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 4.0e-09 67.8 421 25.7
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 4.0e-09 67.8 459 29.8
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 4.0e-09 67.8 462 23.2
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 5.2e-09 67.4 440 28.6
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 8.8e-09 66.6 423 30.5
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 8.8e-09 66.6 419 30.8
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.2e-08 66.2 459 27.5
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 1.5e-08 65.9 413 28.6
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 1.5e-08 65.9 407 29.0
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 4.4e-08 64.3 440 33.0
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 5.7e-08 63.9 409 32.0
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 7.5e-08 63.5 440 23.0
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.3e-07 62.8 160 33.8
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 2.2e-07 62.0 468 27.4
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.8e-07 61.6 440 22.7
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 1.1e-06 59.7 226 31.9
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.8e-06 58.9 414 28.7
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.8e-06 58.9 440 22.7
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 3.1e-06 58.2 409 28.4


User provided reference genes

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