Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 1.3e-195 686.4 415 100.0
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 9.4e-40 168.7 283 36.7
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 2.1e-39 167.5 262 35.5
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 4.7e-39 166.4 228 36.8
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 8.0e-39 165.6 286 33.6
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 8.0e-39 165.6 297 33.3
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 8.0e-39 165.6 286 35.7
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 1.0e-38 165.2 295 32.9
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 1.0e-38 165.2 286 33.6
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 1.0e-38 165.2 295 32.9
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 1.0e-38 165.2 286 33.6
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 1.0e-38 165.2 295 32.9
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 1.4e-38 164.9 287 34.8
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 1.8e-38 164.5 286 33.6
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 2.3e-38 164.1 286 33.6
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 2.3e-38 164.1 286 34.6
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 3.0e-38 163.7 297 33.0
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 3.0e-38 163.7 297 32.7
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 3.0e-38 163.7 293 33.1
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 3.0e-38 163.7 297 32.7
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 3.0e-38 163.7 286 33.6
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 4.0e-38 163.3 288 34.0
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 5.2e-38 162.9 286 33.6
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 5.2e-38 162.9 284 34.5
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 5.2e-38 162.9 287 34.5
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 5.2e-38 162.9 294 33.7
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 5.2e-38 162.9 251 35.9
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 6.8e-38 162.5 295 33.9
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 6.8e-38 162.5 290 34.1
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 8.8e-38 162.2 295 33.9
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 8.8e-38 162.2 290 34.5
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 1.2e-37 161.8 291 33.7
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 1.2e-37 161.8 229 36.2
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 1.5e-37 161.4 286 34.6
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 2.0e-37 161.0 270 35.6
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 2.0e-37 161.0 232 34.9
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 2.6e-37 160.6 287 34.8
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 2.6e-37 160.6 263 35.0
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 3.4e-37 160.2 287 33.4
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 3.4e-37 160.2 290 33.4
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 4.4e-37 159.8 282 34.8
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 4.4e-37 159.8 286 32.9
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 5.7e-37 159.5 232 36.6
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 5.7e-37 159.5 297 32.3
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 7.5e-37 159.1 232 34.1
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 9.8e-37 158.7 233 36.1
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 9.8e-37 158.7 237 35.4
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 1.3e-36 158.3 293 32.1
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 1.3e-36 158.3 290 33.1
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 1.3e-36 158.3 262 33.6
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 1.3e-36 158.3 287 32.8
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 1.7e-36 157.9 232 35.3
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 2.2e-36 157.5 286 32.9
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 3.7e-36 156.8 232 34.9
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 3.7e-36 156.8 232 34.9
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 4.8e-36 156.4 232 34.9
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 6.3e-36 156.0 237 34.6
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 8.3e-36 155.6 239 33.9
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 1.1e-35 155.2 293 32.1
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 1.4e-35 154.8 286 32.9
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 1.4e-35 154.8 289 33.6
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 1.4e-35 154.8 280 33.6
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 1.4e-35 154.8 290 34.1
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 1.4e-35 154.8 154 43.5
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 1.8e-35 154.5 237 34.2
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 2.4e-35 154.1 239 34.3
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 2.4e-35 154.1 239 35.6
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 4.1e-35 153.3 267 34.1
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 5.4e-35 152.9 284 32.7
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 5.4e-35 152.9 267 33.7
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 5.4e-35 152.9 306 32.7
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 9.1e-35 152.1 175 40.0
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 9.1e-35 152.1 180 40.0
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 9.1e-35 152.1 232 33.2
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 9.1e-35 152.1 272 34.6
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 1.6e-34 151.4 258 35.3
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 1.6e-34 151.4 228 33.8
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 4.5e-34 149.8 180 39.4
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 4.5e-34 149.8 241 34.4
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 7.7e-34 149.1 257 33.9
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 2.3e-33 147.5 257 33.9
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 2.9e-33 147.1 286 32.5
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 8.6e-33 145.6 286 31.8
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 8.6e-33 145.6 286 31.8
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 1.9e-32 144.4 329 30.4
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 8.0e-31 139.0 239 31.8
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.4e-30 138.3 262 32.1
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 2.3e-30 137.5 175 37.7
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 3.0e-30 137.1 196 39.3
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 8.8e-30 135.6 225 31.1
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.2e-29 135.2 115 48.7
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 3.4e-29 133.7 113 47.8
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 3.4e-29 133.7 278 29.9
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 1.7e-28 131.3 134 43.3
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.4e-27 128.3 262 30.9
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 2.7e-26 124.0 283 30.4
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 2.7e-26 124.0 256 30.1
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 1.7e-25 121.3 289 31.1
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 3.0e-22 110.5 239 32.2
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 6.8e-22 109.4 287 29.3
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 8.9e-22 109.0 232 31.0
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 9.8e-21 105.5 200 34.5
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 3.7e-20 103.6 286 31.1
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 8.3e-20 102.4 287 30.0
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 1.8e-19 101.3 199 33.7
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 4.1e-19 100.1 200 34.0
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 7.0e-19 99.4 199 33.2
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 9.2e-19 99.0 293 29.0
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 1.2e-18 98.6 199 33.7
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 1.2e-18 98.6 145 34.5
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 1.6e-18 98.2 145 34.5
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 2.0e-18 97.8 196 34.2
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 2.7e-18 97.4 172 33.7
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 3.5e-18 97.1 286 31.8
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 3.5e-18 97.1 199 32.2
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 3.5e-18 97.1 195 32.8
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 5.9e-18 96.3 199 31.7
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 1.3e-17 95.1 195 34.4
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 3.9e-17 93.6 145 33.8
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 5.0e-17 93.2 195 32.3
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 6.6e-17 92.8 199 31.2
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 6.6e-17 92.8 199 31.2
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 1.1e-16 92.0 195 33.3
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 1.5e-16 91.7 198 30.3
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 1.2e-15 88.6 105 38.1
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 1.3e-12 78.6 192 28.6
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 1.7e-12 78.2 139 30.9
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 9.2e-11 72.4 95 36.8
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 2.1e-07 61.2 257 21.4
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.1e-06 58.9 102 32.4
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 1.1e-06 58.9 93 34.4
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 1.4e-06 58.5 80 32.5


User provided reference genes

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