Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre14.g625802 Chlamydomonas reinhardtii HOM05D001240 ORTHO05D002450 0.0e+00 1265.4 918 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3485 Anthoceros agrestis HOM05D001240 ORTHO05D002450 7.2e-32 143.7 580 24.8
Mapoly0035s0133 Marchantia polymorpha HOM05D001240 ORTHO05D002450 6.7e-30 137.1 911 24.7
SEGI_15435 Sequoiadendron giganteum HOM05D001240 ORTHO05D002450 2.2e-28 132.1 918 21.9
Pp3c12_18130 Physcomitrium patens HOM05D001240 ORTHO05D002450 5.9e-26 124.0 926 21.8
Pp3c10_17220 Physcomitrium patens HOM05D001240 ORTHO05D002450 6.3e-20 104.0 935 20.5
Pp3c10_17225 Physcomitrium patens HOM05D001240 ORTHO05D002450 6.3e-20 104.0 935 20.5
CDE06G2238 Ceratophyllum demersum HOM05D001240 ORTHO05D002450 3.1e-19 101.7 904 19.8
Eucgr.J01791 Eucalyptus grandis HOM05D001240 ORTHO05D002450 7.0e-19 100.5 571 23.1
Oeu061502.1 Olea europaea HOM05D001240 ORTHO05D002450 4.5e-18 97.8 586 23.0
Sopen01g002040 Solanum pennellii HOM05D001240 ORTHO05D002450 5.9e-18 97.4 924 19.8
FAN21G1555 Fragaria x ananassa HOM05D001240 ORTHO05D002450 7.7e-18 97.1 586 21.2
Oeu061501.1 Olea europaea HOM05D001240 ORTHO05D002450 7.7e-18 97.1 578 23.2
FAN25G3163 Fragaria x ananassa HOM05D001240 ORTHO05D002450 1.0e-17 96.7 586 21.3
FAN11G1041 Fragaria x ananassa HOM05D001240 ORTHO05D002450 1.3e-17 96.3 586 21.2
Thecc.09G213500 Theobroma cacao HOM05D001240 ORTHO05D002450 1.3e-17 96.3 908 26.8
MSTRG.17144 Avicennia marina HOM05D001240 ORTHO05D002450 1.7e-17 95.9 588 23.6
FAN16G0771 Fragaria x ananassa HOM05D001240 ORTHO05D002450 2.2e-17 95.5 586 21.2
FvH4_3g44811 Fragaria vesca HOM05D001240 ORTHO05D002450 2.9e-17 95.1 586 21.0
Peaxi162Scf00100g00715 Petunia axillaris HOM05D001240 ORTHO05D002450 2.9e-17 95.1 327 23.9
DCAR_001994 Daucus carota HOM05D001240 ORTHO05D002450 5.0e-17 94.4 570 20.7
Actinidia16266 Actinidia chinensis HOM05D001240 ORTHO05D002450 8.5e-17 93.6 571 20.7
Pp3c6_18000 Physcomitrium patens HOM05D001240 ORTHO05D002450 1.1e-16 93.2 577 21.1
Hma1.2p1_0972F.1_g242820 Hydrangea macrophylla HOM05D001240 ORTHO05D002450 1.5e-16 92.8 907 19.7
Haze_22986 Corylus avellana HOM05D001240 ORTHO05D002450 4.2e-16 91.3 589 21.1
CANSAT21G1530 Cannabis sativa HOM05D001240 ORTHO05D002450 5.5e-16 90.9 576 20.3
Lj2C713G1 Lonicera japonica HOM05D001240 ORTHO05D002450 5.5e-16 90.9 910 18.6
Migut.B01559 Erythranthe guttata HOM05D001240 ORTHO05D002450 9.4e-16 90.1 599 23.2
Os10g0565600 Oryza sativa ssp. japonica HOM05D001240 ORTHO05D002450 9.4e-16 90.1 939 19.8
QL01p007971 Quercus lobata HOM05D001240 ORTHO05D002450 1.2e-15 89.7 901 18.3
ECA233G3012 Erigeron canadensis HOM05D001240 ORTHO05D002450 2.7e-15 88.6 907 18.9
Pp3c16_2030 Physcomitrium patens HOM05D001240 ORTHO05D002450 3.6e-15 88.2 936 19.6
AL1G63290 Arabidopsis lyrata HOM05D001240 ORTHO05D002450 4.7e-15 87.8 930 20.8
SGA_v2.0_scaffold153G36935 Striga asiatica HOM05D001240 ORTHO05D002450 4.7e-15 87.8 574 20.9
PSO170G3933 Papaver somniferum HOM05D001240 ORTHO05D002450 6.1e-15 87.4 574 21.4
PGR044G1558 Punica granatum HOM05D001240 ORTHO05D002450 6.1e-15 87.4 570 31.1
RcHm_v2.0_Chr5g0081511 Rosa chinensis HOM05D001240 ORTHO05D002450 6.1e-15 87.4 908 18.6
PSO339G1017 Papaver somniferum HOM05D001240 ORTHO05D002450 8.0e-15 87.0 586 19.6
Lsat_1_v5_gn_4_43721 Lactuca sativa HOM05D001240 ORTHO05D002450 1.0e-14 86.7 431 20.6
AUR62027811 Chenopodium quinoa HOM05D001240 ORTHO05D002450 1.4e-14 86.3 917 19.0
Nitab4.5_0000775g0150 Nicotiana tabacum HOM05D001240 ORTHO05D002450 1.8e-14 85.9 922 19.6
PSO384G2650 Papaver somniferum HOM05D001240 ORTHO05D002450 4.0e-14 84.7 586 19.3
Psat2g026520 Pisum sativum HOM05D001240 ORTHO05D002450 4.0e-14 84.7 598 22.4
Duzib150G0082 Durio zibethinus HOM05D001240 ORTHO05D002450 5.2e-14 84.3 906 19.2
PSO017G0984 Papaver somniferum HOM05D001240 ORTHO05D002450 5.2e-14 84.3 574 21.3
MD08G1205100 Malus domestica HOM05D001240 ORTHO05D002450 6.8e-14 84.0 579 19.9
unitig_22.g5848 Utricularia gibba HOM05D001240 ORTHO05D002450 6.8e-14 84.0 571 20.0
DCAR_015857 Daucus carota HOM05D001240 ORTHO05D002450 8.8e-14 83.6 577 21.7
Carub.0001s4375 Capsella rubella HOM05D001240 ORTHO05D002450 1.2e-13 83.2 934 20.9
RcHm_v2.0_Chr1g0346311 Rosa chinensis HOM05D001240 ORTHO05D002450 1.2e-13 83.2 578 21.3
HPP92_007991 Vanilla planifolia HOM05D001240 ORTHO05D002450 1.2e-13 83.2 567 21.5
CSS0000015 Camellia sinensis var. sinensis HOM05D001240 ORTHO05D002450 1.5e-13 82.8 907 20.0
Dinv02630 Davidia involucrata HOM05D001240 ORTHO05D002450 2.0e-13 82.4 577 21.0
Thhalv10011229m.g Eutrema salsugineum HOM05D001240 ORTHO05D002450 2.6e-13 82.0 931 21.3
SMO174G0047 Selaginella moellendorffii HOM05D001240 ORTHO05D002450 2.6e-13 82.0 570 23.9
Cc01_g01540 Coffea canephora HOM05D001240 ORTHO05D002450 3.4e-13 81.6 567 20.6
MCO10G245 Micromonas commoda HOM05D001240 ORTHO05D002450 3.4e-13 81.6 71 46.5
CiPaw.13G173000 Carya illinoinensis HOM05D001240 ORTHO05D002450 4.4e-13 81.3 492 21.5
Os04g0550400 Oryza sativa ssp. japonica HOM05D001240 ORTHO05D002450 4.4e-13 81.3 567 20.1
Cpa.g.sc119.82 Carica papaya HOM05D001240 ORTHO05D002450 5.7e-13 80.9 95 40.0
MD07G1098900 Malus domestica HOM05D001240 ORTHO05D002450 7.5e-13 80.5 577 20.3
Cpa.g.sc101.40 Carica papaya HOM05D001240 ORTHO05D002450 9.8e-13 80.1 116 33.6
ECA234G2180 Erigeron canadensis HOM05D001240 ORTHO05D002450 1.3e-12 79.7 936 19.9
Cfa009612 Carpinus fangiana HOM05D001240 ORTHO05D002450 2.2e-12 79.0 917 19.5
FAN03G0248 Fragaria x ananassa HOM05D001240 ORTHO05D002450 2.2e-12 79.0 598 21.6
Potri.002G141300 Populus trichocarpa HOM05D001240 ORTHO05D002450 2.2e-12 79.0 581 20.5
Aa31LG10G1020 Aethionema arabicum HOM05D001240 ORTHO05D002450 2.8e-12 78.6 930 21.0
CDE09G1357 Ceratophyllum demersum HOM05D001240 ORTHO05D002450 2.8e-12 78.6 489 21.5
Aqoxy7G00824 Aquilegia oxysepala HOM05D001240 ORTHO05D002450 3.7e-12 78.2 935 20.4
BcaB02g08961 Brassica carinata HOM05D001240 ORTHO05D002450 3.7e-12 78.2 82 37.8
Pp3c25_1490 Physcomitrium patens HOM05D001240 ORTHO05D002450 6.3e-12 77.4 928 19.4
TAR633G0029 Trochodendron aralioides HOM05D001240 ORTHO05D002450 8.3e-12 77.0 935 24.9
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 1.4e-11 76.3 906 18.4
CiPaw.13G029600 Carya illinoinensis HOM05D001240 ORTHO05D002450 1.4e-11 76.3 381 21.0
SGA_v2.0_scaffold52G19205 Striga asiatica HOM05D001240 ORTHO05D003764 1.4e-11 76.3 581 21.5
Lalb_Chr04g0250141 Lupinus albus HOM05D001240 ORTHO05D002450 1.8e-11 75.9 106 34.0
Lalb_Chr19g0126661 Lupinus albus HOM05D001240 ORTHO05D002450 1.8e-11 75.9 577 20.3
TAR633G1852 Trochodendron aralioides HOM05D001240 ORTHO05D002450 1.8e-11 75.9 935 24.7
Glyma.14G050200 Glycine max HOM05D001240 ORTHO05D002450 2.4e-11 75.5 911 19.0
Lalb_Chr03g0040151 Lupinus albus HOM05D001240 ORTHO05D002450 2.4e-11 75.5 577 20.6
MD15G1389000 Malus domestica HOM05D001240 ORTHO05D002450 3.1e-11 75.1 95 37.9
Medtr1g068830 Medicago truncatula HOM05D001240 ORTHO05D002450 3.1e-11 75.1 609 25.6
GSVIVG01025404001 Vitis vinifera HOM05D001240 ORTHO05D002450 3.1e-11 75.1 909 19.4
Prupe.1G537100 Prunus persica HOM05D001240 ORTHO05D002450 4.1e-11 74.7 901 21.1
Ciclev10018789m.g Citrus clementina HOM05D001240 ORTHO05D002450 9.1e-11 73.6 461 21.0
Gohir.D08G089100 Gossypium hirsutum HOM05D001240 ORTHO05D002450 1.6e-10 72.8 927 18.1
Lalb_Chr17g0347201 Lupinus albus HOM05D001240 ORTHO05D002450 1.6e-10 72.8 571 27.7
Rhsim07G0033400 Rhododendron simsii HOM05D001240 ORTHO05D002450 2.7e-10 72.0 116 34.5
vmacro13473 Vaccinium macrocarpon HOM05D001240 ORTHO05D002450 2.7e-10 72.0 577 21.0
vmacro03818 Vaccinium macrocarpon HOM05D001240 ORTHO05D002450 3.5e-10 71.6 613 24.3
Nitab4.5_0011368g0020 Nicotiana tabacum HOM05D001240 ORTHO05D002450 4.5e-10 71.2 909 18.6
PGR004G1996 Punica granatum HOM05D001240 ORTHO05D002450 5.9e-10 70.9 436 20.9
Sed0019139 Sechium edule HOM05D001240 ORTHO05D002450 5.9e-10 70.9 581 23.1
C03p92550 Brassica napus HOM05D001240 ORTHO05D002450 7.7e-10 70.5 926 20.5
Manes.05G051900 Manihot esculenta HOM05D001240 ORTHO05D002450 7.7e-10 70.5 925 19.6
HPP92_015119 Vanilla planifolia HOM05D001240 ORTHO05D002450 7.7e-10 70.5 474 20.9
Medtr5g085010 Medicago truncatula HOM05D001240 ORTHO05D002450 1.0e-09 70.1 907 18.7
Duzib138G0437 Durio zibethinus HOM05D001240 ORTHO05D002450 1.3e-09 69.7 580 20.5
unitig_8.g3840 Utricularia gibba HOM05D001240 ORTHO05D002450 1.3e-09 69.7 494 22.1
MD02G1218200 Malus domestica HOM05D001240 ORTHO05D002450 1.7e-09 69.3 577 19.8
CBR_g70 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-09 68.9 568 23.1
Actinidia12166 Actinidia chinensis HOM05D001240 ORTHO05D002450 2.9e-09 68.6 919 19.7
Gohir.A08G079500 Gossypium hirsutum HOM05D001240 ORTHO05D002450 2.9e-09 68.6 901 17.8
TPR.G25640 Trifolium pratense HOM05D001240 ORTHO05D002450 2.9e-09 68.6 598 19.7
AT1G55250 Arabidopsis thaliana HOM05D001240 ORTHO05D002450 3.8e-09 68.2 954 20.0
LjContig00029g0005450 Lotus japonicus HOM05D001240 ORTHO05D002450 5.0e-09 67.8 907 19.2
Zm00001eb226640 Zea mays HOM05D001240 ORTHO05D002450 5.0e-09 67.8 573 20.4
Atru.chr3.2254 Acer truncatum HOM05D001240 ORTHO05D002450 6.5e-09 67.4 906 19.0
Ciclev10014206m.g Citrus clementina HOM05D001240 ORTHO05D002450 8.6e-09 67.0 910 18.5
COL.COLO4_12451 Corchorus olitorius HOM05D001240 ORTHO05D002450 8.6e-09 67.0 588 20.6
Glyma.02G267300 Glycine max HOM05D001240 ORTHO05D002450 8.6e-09 67.0 934 19.0
Gohir.A07G151900 Gossypium hirsutum HOM05D001240 ORTHO05D002450 8.6e-09 67.0 82 36.6
Sp4g27030 Schrenkiella parvula HOM05D001240 ORTHO05D002450 8.6e-09 67.0 447 19.2
arahy.Tifrunner.gnm1.ann1.PNMP4P Arachis hypogaea HOM05D001240 ORTHO05D002450 1.1e-08 66.6 402 20.9
HanXRQChr13g0404141 Helianthus annuus HOM05D001240 ORTHO05D002450 1.1e-08 66.6 920 19.2
A08p00780 Brassica napus HOM05D001240 ORTHO05D002450 1.5e-08 66.2 926 20.4
Manes.01G271200 Manihot esculenta HOM05D001240 ORTHO05D002450 1.5e-08 66.2 916 19.5
CANSAT80G2722 Cannabis sativa HOM05D001240 ORTHO05D002450 1.9e-08 65.9 902 22.3
Gorai.004G093700 Gossypium raimondii HOM05D001240 ORTHO05D002450 2.5e-08 65.5 901 17.6
Potri.001G008800 Populus trichocarpa HOM05D001240 ORTHO05D002450 2.5e-08 65.5 922 18.2
Cfa011114 Carpinus fangiana HOM05D001240 ORTHO05D002450 3.2e-08 65.1 922 18.9
Lj1g0014311 Lotus japonicus HOM05D001240 ORTHO05D002450 4.2e-08 64.7 918 18.4
Sopen11g008390 Solanum pennellii HOM05D001240 ORTHO05D002450 4.2e-08 64.7 577 19.8
VMungo0647G1617 Vigna mungo HOM05D001240 ORTHO05D002450 5.5e-08 64.3 571 28.5
THA.LOC104815657 Tarenaya hassleriana HOM05D001240 ORTHO05D002450 7.2e-08 63.9 918 18.7
Nn7g35936 Nelumbo nucifera HOM05D001240 ORTHO05D002450 9.5e-08 63.5 902 18.8
SGA_v2.0_scaffold6G03439 Striga asiatica HOM05D001240 ORTHO05D002450 9.5e-08 63.5 908 19.9
FAN10G2665 Fragaria x ananassa HOM05D001240 ORTHO05D002450 1.2e-07 63.2 606 20.6
Sp1g40910 Schrenkiella parvula HOM05D001240 ORTHO05D002450 1.2e-07 63.2 931 23.8
AUR62004133 Chenopodium quinoa HOM05D001240 ORTHO05D002450 1.6e-07 62.8 576 19.6
FAN10G1201 Fragaria x ananassa HOM05D001240 ORTHO05D002450 1.6e-07 62.8 606 20.8
Gohir.A08G029900 Gossypium hirsutum HOM05D001240 ORTHO05D002450 2.1e-07 62.4 550 19.8
SHI13595 Sapria himalayana HOM05D001240 ORTHO05D002450 2.1e-07 62.4 383 19.8
TPR.G39045 Trifolium pratense HOM05D001240 ORTHO05D002450 2.1e-07 62.4 921 19.0
A04p33570 Brassica napus HOM05D001240 ORTHO05D002450 2.8e-07 62.0 576 18.8
BraA04t18819Z Brassica rapa HOM05D001240 ORTHO05D002450 2.8e-07 62.0 576 18.8
CsaV3_4G023460 Cucumis sativus L. HOM05D001240 ORTHO05D002450 2.8e-07 62.0 574 20.9
FAN06G2617 Fragaria x ananassa HOM05D001240 ORTHO05D002450 2.8e-07 62.0 603 19.9
BolC3t21569H Brassica oleracea HOM05D001240 ORTHO05D002450 4.7e-07 61.2 937 20.3
FvH4_7g09510 Fragaria vesca HOM05D001240 ORTHO05D002450 4.7e-07 61.2 612 20.3
Sabra02G0110200 Salix brachista HOM05D001240 ORTHO05D002450 4.7e-07 61.2 559 19.3
Zm00001eb273100 Zea mays HOM05D001240 ORTHO05D002450 4.7e-07 61.2 587 21.0
Ca_06053_v3 Cicer arietinum L. HOM05D001240 ORTHO05D002450 6.1e-07 60.8 917 19.0
Gohir.D08G159100 Gossypium hirsutum HOM05D001240 ORTHO05D002450 6.1e-07 60.8 590 20.0
EL10Ac1g01148 Beta vulgaris HOM05D001240 ORTHO05D002450 8.0e-07 60.5 952 18.4
Cc02_g24800 Coffea canephora HOM05D001240 ORTHO05D002450 1.4e-06 59.7 579 19.3
arahy.Tifrunner.gnm1.ann1.J7EN8P Arachis hypogaea HOM05D001240 ORTHO05D002450 1.8e-06 59.3 574 19.7
BcaC02g07125 Brassica carinata HOM05D001240 ORTHO05D002450 1.8e-06 59.3 578 19.4
MELO3C014670.2 Cucumis melo HOM05D001240 ORTHO05D002450 1.8e-06 59.3 590 20.0
BolC4t28639H Brassica oleracea HOM05D001240 ORTHO05D002450 2.3e-06 58.9 578 19.2
BraA08t32135Z Brassica rapa HOM05D001240 ORTHO05D002450 2.3e-06 58.9 928 20.0
Prupe.2G122900 Prunus persica HOM05D001240 ORTHO05D002450 2.3e-06 58.9 575 19.1
BcaB06g29409 Brassica carinata HOM05D001240 ORTHO05D002450 3.0e-06 58.5 573 18.3
Glyma.11G175700 Glycine max HOM05D001240 ORTHO05D002450 3.0e-06 58.5 577 20.6
MSTRG.20952 Avicennia marina HOM05D001240 ORTHO05D002450 4.0e-06 58.2 907 21.9
FAN06G3317 Fragaria x ananassa HOM05D001240 ORTHO05D002450 4.0e-06 58.2 606 20.1
Lsat_1_v5_gn_6_52501 Lactuca sativa HOM05D001240 ORTHO05D002450 4.0e-06 58.2 570 19.3
Sed0002705 Sechium edule HOM05D001240 ORTHO05D002450 4.0e-06 58.2 575 18.6
TAR375G0817 Trochodendron aralioides HOM05D001240 ORTHO05D002450 4.0e-06 58.2 919 18.8
BcaC02g12257 Brassica carinata HOM05D001240 ORTHO05D002450 6.8e-06 57.4 591 19.1
THA.LOC104817201 Tarenaya hassleriana HOM05D001240 ORTHO05D002450 8.8e-06 57.0 573 17.3


User provided reference genes

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