Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 0.0e+00 1237.2 626 100.0
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 7.2e-209 731.1 614 61.4
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 8.2e-205 717.6 614 59.6
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 3.6e-200 702.2 619 59.0
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 4.0e-199 698.7 614 58.3
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 4.4e-198 695.3 610 59.3
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 7.5e-198 694.5 614 58.3
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 8.2e-197 691.0 612 57.7
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 2.7e-195 686.0 617 57.5
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 1.3e-194 683.7 614 57.7
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 2.2e-194 682.9 615 57.9
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 7.2e-193 677.9 615 57.2
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 4.7e-192 675.2 614 56.8
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 8.0e-192 674.5 615 57.4
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 1.4e-191 673.7 604 57.0
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 1.4e-191 673.7 617 56.2
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 1.4e-191 673.7 616 55.8
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 2.3e-191 672.9 612 57.0
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 5.2e-191 671.8 614 56.5
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 1.2e-190 670.6 612 56.9
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 2.6e-190 669.5 612 56.5
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 3.4e-190 669.1 593 58.3
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 4.4e-190 668.7 616 55.4
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 4.4e-190 668.7 610 56.6
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 9.8e-190 667.5 611 56.6
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 1.3e-189 667.2 614 54.7
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 3.7e-189 665.6 612 56.2
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 1.8e-188 663.3 616 54.7
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 1.8e-188 663.3 621 58.0
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 3.1e-188 662.5 612 56.9
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 3.1e-188 662.5 629 55.2
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 7.0e-188 661.4 615 56.4
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 9.1e-188 661.0 612 56.7
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 9.1e-188 661.0 612 56.7
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 9.1e-188 661.0 616 56.7
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 1.6e-187 660.2 614 56.2
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 3.5e-187 659.1 617 55.6
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 5.9e-187 658.3 611 56.1
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 7.7e-187 657.9 614 56.0
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 1.0e-186 657.5 594 57.4
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 1.0e-186 657.5 612 56.4
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 1.7e-186 656.8 611 56.0
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 2.9e-186 656.0 621 55.1
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 2.9e-186 656.0 621 55.1
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 3.8e-186 655.6 613 55.8
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 5.0e-186 655.2 626 55.4
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 5.0e-186 655.2 611 56.0
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 5.0e-186 655.2 637 54.3
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 6.5e-186 654.8 614 55.0
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 6.5e-186 654.8 615 55.8
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 6.5e-186 654.8 614 55.5
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 6.5e-186 654.8 611 55.8
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 8.5e-186 654.4 618 55.8
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 8.5e-186 654.4 617 55.9
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 8.5e-186 654.4 614 56.0
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 8.5e-186 654.4 632 55.1
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 1.1e-185 654.1 626 55.3
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 1.9e-185 653.3 624 55.0
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 1.9e-185 653.3 621 54.9
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 2.5e-185 652.9 618 55.7
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 2.5e-185 652.9 626 55.3
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 3.2e-185 652.5 619 55.6
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 5.5e-185 651.7 622 54.8
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 5.5e-185 651.7 624 54.8
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 5.5e-185 651.7 614 55.9
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 5.5e-185 651.7 614 55.7
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 7.2e-185 651.4 626 55.1
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 9.5e-185 651.0 612 56.0
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 2.1e-184 649.8 619 54.3
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 2.7e-184 649.4 614 54.4
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 2.7e-184 649.4 614 55.7
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 4.7e-184 648.7 615 54.6
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 1.0e-183 647.5 624 54.8
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 1.0e-183 647.5 610 55.6
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 1.0e-183 647.5 617 55.3
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.2e-182 644.0 622 53.4
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 1.2e-182 644.0 622 53.9
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 1.5e-182 643.7 625 54.2
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 2.0e-182 643.3 641 53.2
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 2.8e-181 639.4 616 53.2
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 6.3e-181 638.3 621 54.3
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 6.3e-181 638.3 600 56.5
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 8.3e-181 637.9 615 55.3
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 4.1e-180 635.6 614 55.4
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 5.4e-180 635.2 592 56.2
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.2e-179 634.0 596 56.9
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 2.0e-179 633.3 611 54.5
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.0e-178 630.9 614 55.2
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 1.3e-178 630.6 614 53.1
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 2.9e-178 629.4 615 54.1
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 6.6e-178 628.2 620 53.4
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 8.0e-176 621.3 527 60.2
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 2.3e-175 619.8 611 53.4
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 3.0e-175 619.4 526 60.3
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 5.2e-175 618.6 542 57.9
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 1.5e-174 617.1 644 51.9
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 1.4e-172 610.5 625 52.3
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 2.4e-172 609.8 613 52.0
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 4.1e-172 609.0 643 52.3
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 4.1e-172 609.0 692 49.6
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.7e-171 606.3 536 58.6
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 3.5e-171 605.9 612 53.4
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 7.8e-171 604.7 610 53.0
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 8.6e-170 601.3 746 46.0
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 3.3e-169 599.4 613 50.7
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 5.6e-169 598.6 586 54.9
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 1.2e-168 597.4 601 52.4
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 1.8e-167 593.6 594 53.2
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 3.1e-167 592.8 537 57.7
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 3.1e-167 592.8 531 56.7
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 3.4e-166 589.3 534 57.1
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 4.9e-165 585.5 611 52.9
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 2.6e-158 563.1 543 54.3
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 2.3e-154 550.1 503 58.6
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 1.4e-151 540.8 591 50.4
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 8.9e-151 538.1 471 59.2
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 2.9e-149 533.1 532 52.4
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 1.1e-143 514.6 807 39.8
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 6.4e-141 505.4 606 45.4
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 1.9e-140 503.8 615 46.0
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.7e-138 497.3 436 58.7
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 1.7e-138 497.3 624 46.8
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 3.4e-134 483.0 588 46.4
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 9.3e-132 474.9 453 56.3
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.3e-125 454.5 623 43.7
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 6.7e-106 389.0 345 59.1
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 1.8e-103 380.9 511 43.4
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 5.1e-98 362.8 421 48.9
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 1.7e-96 357.8 384 49.5
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 2.6e-94 350.5 812 32.9
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 5.0e-93 346.3 417 46.8
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.4e-90 338.2 409 48.2
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 4.1e-87 326.6 349 52.1
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 1.6e-86 324.7 280 57.5
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 3.5e-86 323.6 286 59.1
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 1.3e-85 321.6 317 53.3
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.4e-79 301.6 263 59.3
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.5e-76 291.6 447 39.4
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.1e-71 275.4 308 49.7
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.9e-68 264.6 200 63.5
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.4e-65 253.8 615 30.2
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 5.0e-61 240.0 186 62.4
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 5.2e-58 229.9 169 68.0
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 6.8e-58 229.6 186 60.2
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.2e-56 224.6 263 45.2
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.5e-54 217.2 188 60.6
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 1.1e-50 205.7 167 59.9
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 1.4e-50 205.3 164 61.0
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 6.8e-50 203.0 163 60.7
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 6.0e-46 189.9 254 43.3
Nitab4.5_0000069g0100 Nicotiana tabacum HOM05D003829 ORTHO05D004943 5.0e-45 186.8 249 43.0
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 2.4e-39 167.9 120 63.3
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 3.0e-37 161.0 131 59.5
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 4.7e-35 153.7 209 43.5
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 8.9e-34 149.4 207 41.1
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 4.4e-33 147.1 217 41.5
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 7.6e-33 146.4 207 41.1
HPP92_013186 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.2e-32 144.8 182 42.9
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 3.5e-30 137.5 162 45.1
Rhsim09G0090700 Rhododendron simsii HOM05D000822 ORTHO05D002021 1.5e-28 132.1 171 46.8
SEGI_23908 Sequoiadendron giganteum HOM05D003829 ORTHO05D004052 2.4e-26 124.8 223 38.6
SEGI_39885 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 4.4e-25 120.6 126 48.4
Glyma.05G172902 Glycine max HOM05D003829 ORTHO05D004943 2.1e-22 111.7 145 43.4
Oeu029991.1 Olea europaea HOM05D003829 ORTHO05D004943 8.7e-21 106.3 125 46.4
BraA03t10079Z Brassica rapa HOM05D000168 ORTHO05D000811 2.5e-20 104.8 126 42.1
A03p07510 Brassica napus HOM05D003829 ORTHO05D004943 4.3e-20 104.0 126 42.9
C03p08720 Brassica napus HOM05D003829 ORTHO05D004943 2.4e-18 98.2 126 42.9
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 4.0e-18 97.4 90 52.2
BolC3t13370H Brassica oleracea HOM05D000168 ORTHO05D000811 5.3e-18 97.1 126 42.1
HanXRQChr05g0129701 Helianthus annuus HOM05D003829 ORTHO05D044979 3.8e-16 90.9 90 52.2
TPR.G25992 Trifolium pratense HOM05D003829 ORTHO05D015515 3.8e-16 90.9 81 59.3
CARHR202060 Cardamine hirsuta HOM05D003829 ORTHO05D116213 7.1e-15 86.7 67 62.7
Hma1.2p1_0340F.1_g130220 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 4.3e-12 77.4 137 35.8
HPP92_012679 Vanilla planifolia HOM05D000282 ORTHO05D004791 6.2e-11 73.6 143 32.2
Lsat_1_v5_gn_3_100941 Lactuca sativa HOM05D002028 ORTHO05D022527 2.0e-09 68.6 63 52.4
MELO3C029751.2 Cucumis melo HOM05D003829 ORTHO05D044979 1.3e-08 65.9 87 41.4
Lsat_1_v5_gn_4_30320 Lactuca sativa HOM05D003829 ORTHO05D015515 3.2e-07 61.2 38 68.4


User provided reference genes

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