Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre13.g577450 Chlamydomonas reinhardtii HOM05D003507 ORTHO05D004324 0.0e+00 1276.2 690 100.0
AUR62013829 Chenopodium quinoa HOM05D003507 ORTHO05D004324 3.9e-118 429.9 672 40.9
PGR142G1627 Punica granatum HOM05D003507 ORTHO05D004324 4.3e-117 426.4 668 40.1
SMO334G0124 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 4.7e-116 422.9 665 40.2
Haze_16857 Corylus avellana HOM05D003507 ORTHO05D004324 8.1e-116 422.2 709 39.1
arahy.Tifrunner.gnm1.ann1.8GLB3P Arachis hypogaea HOM05D003507 ORTHO05D004324 4.0e-115 419.9 710 38.3
Carub.0003s0955 Capsella rubella HOM05D003507 ORTHO05D004324 4.0e-115 419.9 712 38.9
arahy.Tifrunner.gnm1.ann1.TAZB16 Arachis hypogaea HOM05D003507 ORTHO05D004324 6.8e-115 419.1 710 38.3
AUR62036906 Chenopodium quinoa HOM05D003507 ORTHO05D004324 8.9e-115 418.7 658 39.7
Gorai.012G005900 Gossypium raimondii HOM05D003507 ORTHO05D004324 8.9e-115 418.7 715 38.6
Aa31LG1G21080 Aethionema arabicum HOM05D003507 ORTHO05D004324 1.2e-114 418.3 665 39.8
Cfa001677 Carpinus fangiana HOM05D003507 ORTHO05D004324 1.2e-114 418.3 709 39.2
Glyma.10G207700 Glycine max HOM05D003507 ORTHO05D004324 2.0e-114 417.5 665 39.7
Sc20g0001600 Simmondsia chinensis HOM05D003507 ORTHO05D004324 2.0e-114 417.5 707 38.5
MBI18_g28045_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 2.6e-114 417.2 665 40.0
Sp3g08640 Schrenkiella parvula HOM05D003507 ORTHO05D004324 2.6e-114 417.2 713 39.3
A01p41890 Brassica napus HOM05D003507 ORTHO05D004324 3.4e-114 416.8 714 39.1
BraA01t04259Z Brassica rapa HOM05D003507 ORTHO05D004324 3.4e-114 416.8 714 39.1
ClCG08G007670 Citrullus lanatus HOM05D003507 ORTHO05D004324 3.4e-114 416.8 665 39.2
MELO3C019820.2 Cucumis melo HOM05D003507 ORTHO05D004324 3.4e-114 416.8 665 39.4
CARHR084850 Cardamine hirsuta HOM05D003507 ORTHO05D004324 4.4e-114 416.4 720 39.2
Thhalv10020293m.g Eutrema salsugineum HOM05D003507 ORTHO05D004324 4.4e-114 416.4 713 39.4
Mapoly0025s0008 Marchantia polymorpha HOM05D003507 ORTHO05D004324 4.4e-114 416.4 712 38.1
ATR0219G019 Amborella trichopoda HOM05D003507 ORTHO05D004324 5.8e-114 416.0 720 38.9
TAR627G0142 Trochodendron aralioides HOM05D003507 ORTHO05D004324 5.8e-114 416.0 665 40.6
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 7.6e-114 415.6 718 39.3
BolC1t05405H Brassica oleracea HOM05D003507 ORTHO05D004324 7.6e-114 415.6 662 39.7
AT3G10370 Arabidopsis thaliana HOM05D003507 ORTHO05D004324 9.9e-114 415.2 709 38.9
BcaB04g21215 Brassica carinata HOM05D003507 ORTHO05D004324 9.9e-114 415.2 711 39.2
DCAR_019087 Daucus carota HOM05D003507 ORTHO05D004324 9.9e-114 415.2 716 37.4
Pp3c4_15510 Physcomitrium patens HOM05D003507 ORTHO05D004324 9.9e-114 415.2 715 38.5
A05p38780 Brassica napus HOM05D003507 ORTHO05D004324 1.3e-113 414.8 720 38.9
A07p45220 Brassica napus HOM05D003507 ORTHO05D004324 1.7e-113 414.5 665 39.1
PSO541G4906 Papaver somniferum HOM05D003507 ORTHO05D004324 1.7e-113 414.5 667 40.0
COL.COLO4_17137 Corchorus olitorius HOM05D003507 ORTHO05D004324 2.2e-113 414.1 712 38.1
Glyma.02G165500 Glycine max HOM05D003507 ORTHO05D004324 2.9e-113 413.7 715 38.0
Medtr1g050720 Medicago truncatula HOM05D003507 ORTHO05D004324 2.9e-113 413.7 665 39.7
C05p57790 Brassica napus HOM05D003507 ORTHO05D004324 3.8e-113 413.3 722 38.6
BraA07t32025Z Brassica rapa HOM05D003507 ORTHO05D004324 4.9e-113 412.9 665 39.2
CANSAT56G3424 Cannabis sativa HOM05D003507 ORTHO05D004324 4.9e-113 412.9 719 38.0
CsaV3_6G036660 Cucumis sativus L. HOM05D003507 ORTHO05D004324 4.9e-113 412.9 717 37.9
Manes.10G050100 Manihot esculenta HOM05D003507 ORTHO05D004324 6.4e-113 412.5 724 38.5
Sed0010237 Sechium edule HOM05D003507 ORTHO05D004324 6.4e-113 412.5 665 39.2
BcaC05g29472 Brassica carinata HOM05D003507 ORTHO05D004324 1.1e-112 411.8 722 38.5
BolC5t34436H Brassica oleracea HOM05D003507 ORTHO05D004324 1.1e-112 411.8 722 38.5
BraA05t22670Z Brassica rapa HOM05D003507 ORTHO05D004324 1.1e-112 411.8 720 38.6
Rhsim09G0148300 Rhododendron simsii HOM05D003507 ORTHO05D004324 1.1e-112 411.8 712 38.6
SalBow4G0138 Salvia bowleyana HOM05D003507 ORTHO05D004324 1.4e-112 411.4 708 37.4
C06p54060 Brassica napus HOM05D003507 ORTHO05D004324 1.9e-112 411.0 665 39.1
CiPaw.02G172300 Carya illinoinensis HOM05D003507 ORTHO05D004324 1.9e-112 411.0 709 38.4
TPR.G7608 Trifolium pratense HOM05D003507 ORTHO05D004324 1.9e-112 411.0 665 38.5
Oeu013840.1 Olea europaea HOM05D003507 ORTHO05D004324 2.4e-112 410.6 729 37.9
MSTRG.27484 Avicennia marina HOM05D003507 ORTHO05D004324 4.2e-112 409.8 711 37.8
MSTRG.9152 Avicennia marina HOM05D003507 ORTHO05D004324 4.2e-112 409.8 711 37.8
Rhsim03G0116200 Rhododendron simsii HOM05D003507 ORTHO05D004324 5.4e-112 409.5 665 39.4
RcHm_v2.0_Chr1g0362611 Rosa chinensis HOM05D003507 ORTHO05D004324 5.4e-112 409.5 718 37.5
BolC6t40419H Brassica oleracea HOM05D003507 ORTHO05D004324 9.3e-112 408.7 665 38.9
Glyma.20G183100 Glycine max HOM05D003507 ORTHO05D004324 9.3e-112 408.7 712 37.5
FAN06G1568 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.2e-111 408.3 716 37.2
FAN06G2975 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.2e-111 408.3 716 37.2
VMungo0720G1021 Vigna mungo HOM05D003507 ORTHO05D004324 1.6e-111 407.9 665 38.5
Actinidia18606 Actinidia chinensis HOM05D003507 ORTHO05D004324 2.7e-111 407.1 711 38.0
Dinv36393 Davidia involucrata HOM05D003507 ORTHO05D004324 2.7e-111 407.1 711 37.6
FvH4_7g18820 Fragaria vesca HOM05D003507 ORTHO05D004324 2.7e-111 407.1 716 37.0
Ca_11760_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 3.5e-111 406.8 665 38.6
ECA233G4141 Erigeron canadensis HOM05D003507 ORTHO05D004324 6.0e-111 406.0 665 38.6
FAN10G1468 Fragaria x ananassa HOM05D003507 ORTHO05D004324 7.8e-111 405.6 716 37.0
Aqoxy1G02537 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 1.0e-110 405.2 667 39.7
Sed0023455 Sechium edule HOM05D003507 ORTHO05D004324 1.7e-110 404.4 665 38.5
Phvul.007G245200 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 2.3e-110 404.1 712 37.8
unitig_88.g27816 Utricularia gibba HOM05D003507 ORTHO05D004324 3.9e-110 403.3 680 39.3
Migut.F01958 Erythranthe guttata HOM05D003507 ORTHO05D004324 5.1e-110 402.9 712 37.2
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 5.1e-110 402.9 716 36.9
FAN10G2698 Fragaria x ananassa HOM05D003507 ORTHO05D004324 5.1e-110 402.9 716 37.0
arahy.Tifrunner.gnm1.ann1.X5QL3X Arachis hypogaea HOM05D003507 ORTHO05D004324 6.6e-110 402.5 733 37.4
Lalb_Chr02g0152061 Lupinus albus HOM05D003507 ORTHO05D004324 6.6e-110 402.5 665 38.2
MD07G1170100 Malus domestica HOM05D003507 ORTHO05D004324 6.6e-110 402.5 726 36.8
MD07G1170200 Malus domestica HOM05D003507 ORTHO05D004324 6.6e-110 402.5 726 36.8
Phvul.007G099000 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 6.6e-110 402.5 666 38.9
FAN01G0276 Fragaria x ananassa HOM05D003507 ORTHO05D004324 8.7e-110 402.1 716 37.0
RhsimUnG0185700 Rhododendron simsii HOM05D003507 ORTHO05D004324 8.7e-110 402.1 712 38.2
Lsat_1_v5_gn_8_20780 Lactuca sativa HOM05D003507 ORTHO05D004324 2.5e-109 400.6 726 37.1
Nn2g13785 Nelumbo nucifera HOM05D003507 ORTHO05D004324 2.5e-109 400.6 708 37.1
Nitab4.5_0001659g0110 Nicotiana tabacum HOM05D003507 ORTHO05D004324 2.5e-109 400.6 712 37.1
Lj5g0027490 Lotus japonicus HOM05D003507 ORTHO05D004324 4.3e-109 399.8 672 37.4
EL10Ac1g02015 Beta vulgaris HOM05D003507 ORTHO05D004324 5.6e-109 399.4 691 37.2
Prupe.2G209000 Prunus persica HOM05D003507 ORTHO05D004324 9.6e-109 398.7 720 36.2
TPR.G38613 Trifolium pratense HOM05D003507 ORTHO05D004324 2.1e-108 397.5 711 37.0
TWI63G0759 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 1.8e-107 394.4 669 38.3
Ah.11g040810 Amaranthus hybridus HOM05D003507 ORTHO05D004324 5.3e-107 392.9 664 38.0
CSS0014006 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 9.0e-107 392.1 725 36.8
CSS0018584 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 9.0e-107 392.1 725 36.8
Sc09g0006070 Simmondsia chinensis HOM05D003507 ORTHO05D004324 2.0e-106 391.0 509 43.0
vmacro07121 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 3.4e-106 390.2 709 36.8
SGA_v2.0_scaffold62G21389 Striga asiatica HOM05D003507 ORTHO05D004324 1.3e-105 388.3 665 37.9
TWI38G0486 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 1.3e-105 388.3 710 37.3
Gohir.D04G004700 Gossypium hirsutum HOM05D003507 ORTHO05D004324 1.7e-105 387.9 718 36.9
ECA232G4763 Erigeron canadensis HOM05D003507 ORTHO05D004324 2.2e-105 387.5 509 42.4
Potri.010G226700 Populus trichocarpa HOM05D003507 ORTHO05D004324 6.4e-105 386.0 665 37.4
QL08p054391 Quercus lobata HOM05D003507 ORTHO05D004324 8.4e-105 385.6 713 36.5
QL08p054526 Quercus lobata HOM05D003507 ORTHO05D004324 8.4e-105 385.6 713 36.3
HanXRQChr17g0564181 Helianthus annuus HOM05D003507 ORTHO05D004324 1.9e-104 384.4 664 37.7
Gohir.A06G168100 Gossypium hirsutum HOM05D003507 ORTHO05D004324 2.4e-104 384.0 715 36.6
Eucgr.G02866 Eucalyptus grandis HOM05D003507 ORTHO05D004324 4.2e-104 383.3 666 38.0
Sabra10G0175000 Salix brachista HOM05D003507 ORTHO05D004324 4.2e-104 383.3 664 36.7
Gohir.D06G175500 Gossypium hirsutum HOM05D003507 ORTHO05D004324 7.1e-104 382.5 718 36.9
Gorai.010G205900 Gossypium raimondii HOM05D003507 ORTHO05D004324 7.1e-104 382.5 715 37.1
THA.LOC104816425 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 1.2e-103 381.7 713 36.6
THA.LOC104826896 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 1.6e-103 381.3 712 37.4
Zm00001eb419210 Zea mays HOM05D003507 ORTHO05D004324 2.7e-103 380.6 662 37.8
TAR623G1746 Trochodendron aralioides HOM05D003507 ORTHO05D004324 3.5e-103 380.2 665 37.7
MCO16G042 Micromonas commoda HOM05D003507 ORTHO05D004324 4.6e-103 379.8 669 38.1
Gohir.A05G411300 Gossypium hirsutum HOM05D003507 ORTHO05D004324 6.0e-103 379.4 715 36.2
Hund22747 Selenicereus undatus HOM05D003507 ORTHO05D004324 7.9e-103 379.0 664 37.2
GSVIVG01016222001 Vitis vinifera HOM05D003507 ORTHO05D004324 1.0e-102 378.6 665 36.8
Manes.07G133156 Manihot esculenta HOM05D003507 ORTHO05D004324 1.7e-102 377.9 727 36.3
VMungo0720G1977 Vigna mungo HOM05D003507 ORTHO05D004324 3.0e-102 377.1 726 36.4
PSO210G6851 Papaver somniferum HOM05D003507 ORTHO05D004324 3.9e-102 376.7 509 42.4
PSO210G4234 Papaver somniferum HOM05D003507 ORTHO05D004324 5.1e-102 376.3 509 42.2
AL491U10020 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 8.7e-102 375.6 712 36.9
THA.LOC104824233 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 1.9e-101 374.4 668 37.1
Duzib128G1288 Durio zibethinus HOM05D003507 ORTHO05D004324 2.5e-101 374.0 712 36.1
Lsat_1_v5_gn_9_70220 Lactuca sativa HOM05D003507 ORTHO05D004324 2.5e-101 374.0 516 42.1
Psat6g130440 Pisum sativum HOM05D003507 ORTHO05D004324 2.5e-101 374.0 478 43.5
CAN.G1121.6 Capsicum annuum HOM05D003507 ORTHO05D004324 7.3e-101 372.5 478 43.7
Cc02_g10950 Coffea canephora HOM05D003507 ORTHO05D004324 9.6e-101 372.1 665 36.4
Duzib114G0668 Durio zibethinus HOM05D003507 ORTHO05D004324 2.1e-100 370.9 508 41.5
Psat6g180000 Pisum sativum HOM05D003507 ORTHO05D004324 2.8e-100 370.5 715 36.1
Thecc.10G083100 Theobroma cacao HOM05D003507 ORTHO05D004324 2.8e-100 370.5 715 35.8
SHI08893 Sapria himalayana HOM05D003507 ORTHO05D004324 6.2e-100 369.4 716 35.9
Aqoxy1G01151 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 2.4e-99 367.5 509 41.5
HanXRQChr08g0218541 Helianthus annuus HOM05D003507 ORTHO05D004324 2.4e-99 367.5 665 36.1
CiPaw.01G268800 Carya illinoinensis HOM05D003507 ORTHO05D004324 1.5e-98 364.8 710 35.9
MD01G1103300 Malus domestica HOM05D003507 ORTHO05D004324 1.5e-98 364.8 719 35.3
AL3G21700 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 3.4e-98 363.6 467 44.5
Ca_10543_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 3.4e-98 363.6 667 36.4
vmacro04843 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 7.6e-98 362.5 525 41.9
HPP92_008484 Vanilla planifolia HOM05D003507 ORTHO05D004324 9.9e-98 362.1 508 41.1
arahy.Tifrunner.gnm1.ann1.WAL6D9 Arachis hypogaea HOM05D003507 ORTHO05D004324 1.3e-94 351.7 628 35.7
AagrBONN_evm.TU.Sc2ySwM_117.1947 Anthoceros agrestis HOM05D003507 ORTHO05D004324 1.3e-92 345.1 574 38.7
Dinv31230 Davidia involucrata HOM05D003507 ORTHO05D004324 1.6e-92 344.7 639 36.8
Nn6g35287 Nelumbo nucifera HOM05D003507 ORTHO05D004324 9.0e-91 339.0 476 41.6
CBR_g49884 Chara braunii HOM05D003507 ORTHO05D000048 7.6e-90 335.9 463 43.8
Cfa022775 Carpinus fangiana HOM05D003507 ORTHO05D004324 3.0e-86 323.9 661 35.1
MBI17_g03745_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 3.9e-86 323.6 377 48.3
CBR_g56910 Chara braunii HOM05D003507 ORTHO05D004324 9.6e-85 318.9 696 34.8
BcaNung06834 Brassica carinata HOM05D003507 ORTHO05D004324 6.1e-79 299.7 654 35.8
Haze_26728 Corylus avellana HOM05D003507 ORTHO05D004324 6.3e-76 289.7 468 38.0
Os04g0224900 Oryza sativa ssp. japonica HOM05D003507 ORTHO05D004324 6.3e-76 289.7 373 43.4
MBI17_g46352_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 2.6e-74 284.3 702 34.3
BcaNung06832 Brassica carinata HOM05D003507 ORTHO05D004324 4.5e-74 283.5 305 48.9
Atru.chr12.838 Acer truncatum HOM05D003507 ORTHO05D008357 7.9e-71 272.7 327 45.0
CDE02G2605 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 1.5e-69 268.5 760 29.3
ATR0680G388 Amborella trichopoda HOM05D003507 ORTHO05D004324 9.7e-69 265.8 469 36.9
Solyc11g008380.3 Solanum lycopersicum HOM05D003507 ORTHO05D004324 2.1e-55 221.5 466 34.3
Nitab4.5_0001450g0180 Nicotiana tabacum HOM05D003507 ORTHO05D004324 4.7e-55 220.3 466 34.5
Aqoxy1G02532 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 2.6e-53 214.5 420 36.2
Lj2A20T45 Lonicera japonica HOM05D003507 ORTHO05D004324 5.7e-53 213.4 255 45.5
Lj2C20G5 Lonicera japonica HOM05D003507 ORTHO05D004324 6.3e-52 209.9 468 33.5
Peaxi162Scf00145g01313 Petunia axillaris HOM05D003507 ORTHO05D004324 8.2e-52 209.5 464 33.2
CiPaw.14G115300 Carya illinoinensis HOM05D003507 ORTHO05D004324 1.4e-43 182.2 472 30.3
Cpa.g.sc2869.2 Carica papaya HOM05D003507 ORTHO05D004324 1.6e-42 178.7 242 42.6
SEGI_18211 Sequoiadendron giganteum HOM05D003507 ORTHO05D004324 3.5e-42 177.6 258 40.7
BcaNung06282 Brassica carinata HOM05D003507 ORTHO05D004324 1.3e-41 175.6 137 58.4
VMungo0251G1768 Vigna mungo HOM05D003507 ORTHO05D004324 4.2e-40 170.6 248 39.1
Oeu000789.2 Olea europaea HOM05D003507 ORTHO05D004324 1.8e-35 155.2 272 36.0
SMO361G0200 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 1.7e-33 148.7 153 49.7
SEGI_22983 Sequoiadendron giganteum HOM05D003507 ORTHO05D004324 7.8e-26 123.2 110 51.8
Nitab4.5_0027540g0010 Nicotiana tabacum HOM05D003507 ORTHO05D004324 3.9e-25 120.9 193 39.4
Cpa.g.sc3863.1 Carica papaya HOM05D003507 ORTHO05D004324 2.3e-22 111.7 302 33.4
Oeu051137.1 Olea europaea HOM05D003507 ORTHO05D004324 2.0e-21 108.6 294 32.3
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 2.0e-21 108.6 493 24.7
CSS0013740 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 4.9e-20 104.0 179 38.0
Actinidia06739 Actinidia chinensis HOM05D003507 ORTHO05D004324 8.3e-20 103.2 93 57.0
CSS0011029 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 1.4e-19 102.4 178 39.3
CSS0003260 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 2.4e-19 101.7 92 55.4
CSS0013186 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 7.0e-19 100.1 92 56.5
CSS0000572 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 9.2e-19 99.8 178 38.2
CSS0002523 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 9.2e-19 99.8 85 55.3
CSS0016001 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 2.6e-13 81.6 115 41.7
CSS0038211 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 3.4e-13 81.3 75 50.7
Nn2g13805 Nelumbo nucifera HOM05D003507 ORTHO05D004324 3.9e-09 67.8 73 52.1
HPP92_008470 Vanilla planifolia HOM05D003507 ORTHO05D429279 2.8e-07 61.6 64 45.3


User provided reference genes

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