Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 0.0e+00 1265.0 973 100.0
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 0.0e+00 1114.0 951 88.4
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 2.4e-33 148.7 409 31.8
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 9.0e-33 146.7 390 29.7
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 2.6e-32 145.2 414 30.0
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 1.0e-31 143.3 432 30.8
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 1.7e-31 142.5 393 30.0
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 3.8e-31 141.4 419 29.1
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 8.4e-31 140.2 393 29.3
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 8.4e-31 140.2 394 29.4
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 1.4e-30 139.4 395 29.6
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 1.9e-30 139.0 381 30.7
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 1.9e-30 139.0 414 29.2
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 2.5e-30 138.7 402 28.6
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 2.5e-30 138.7 388 29.9
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 4.2e-30 137.9 385 29.1
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 5.5e-30 137.5 391 29.2
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 5.5e-30 137.5 384 29.2
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 7.1e-30 137.1 390 30.0
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 7.1e-30 137.1 387 28.9
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 9.3e-30 136.7 377 30.8
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 1.2e-29 136.3 398 30.7
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 1.2e-29 136.3 398 30.7
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 1.2e-29 136.3 407 28.7
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 1.2e-29 136.3 416 29.3
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 2.7e-29 135.2 403 28.5
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 3.5e-29 134.8 387 28.4
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 3.5e-29 134.8 392 28.3
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 4.6e-29 134.4 396 29.5
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 4.6e-29 134.4 391 29.2
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 6.0e-29 134.0 398 30.7
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 6.0e-29 134.0 387 29.2
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 6.0e-29 134.0 383 29.2
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 6.0e-29 134.0 411 29.2
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 7.9e-29 133.7 398 30.4
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 7.9e-29 133.7 388 28.6
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 7.9e-29 133.7 398 29.1
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 1.0e-28 133.3 388 28.9
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 1.3e-28 132.9 398 30.4
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.3e-28 132.9 388 28.4
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 1.3e-28 132.9 425 28.9
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 1.8e-28 132.5 393 30.0
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.8e-28 132.5 381 28.3
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.8e-28 132.5 381 28.3
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.8e-28 132.5 389 28.8
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.8e-28 132.5 385 29.6
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 2.3e-28 132.1 390 29.0
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 2.3e-28 132.1 399 29.6
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 2.3e-28 132.1 392 27.8
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 3.0e-28 131.7 435 28.5
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 3.9e-28 131.3 387 28.4
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 3.9e-28 131.3 395 29.4
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 6.7e-28 130.6 383 28.5
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 6.7e-28 130.6 386 28.5
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 6.7e-28 130.6 383 29.2
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 8.7e-28 130.2 384 28.6
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 8.7e-28 130.2 413 29.3
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 1.1e-27 129.8 386 28.5
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 1.5e-27 129.4 391 28.9
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.5e-27 129.4 408 27.9
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 1.5e-27 129.4 430 28.1
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.9e-27 129.0 385 28.3
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.9e-27 129.0 391 28.4
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 2.5e-27 128.6 439 26.7
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 2.5e-27 128.6 388 29.6
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 2.5e-27 128.6 379 28.2
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 3.3e-27 128.3 408 29.7
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 3.3e-27 128.3 432 28.7
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.3e-27 127.9 391 29.7
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 4.3e-27 127.9 384 29.9
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 5.7e-27 127.5 408 27.7
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 5.7e-27 127.5 400 28.5
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 7.4e-27 127.1 404 27.5
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 7.4e-27 127.1 407 27.8
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 7.4e-27 127.1 407 27.8
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 7.4e-27 127.1 423 28.4
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 9.6e-27 126.7 393 28.8
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 9.6e-27 126.7 390 27.2
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 9.6e-27 126.7 390 28.5
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 1.3e-26 126.3 399 27.3
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.3e-26 126.3 390 28.5
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 1.6e-26 125.9 402 29.1
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 1.6e-26 125.9 384 28.1
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.1e-26 125.6 451 27.3
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 2.1e-26 125.6 408 29.4
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 2.1e-26 125.6 387 28.4
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 2.1e-26 125.6 408 28.4
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 2.8e-26 125.2 408 29.2
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 2.8e-26 125.2 388 28.6
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.8e-26 125.2 380 29.5
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 3.7e-26 124.8 389 28.3
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 3.7e-26 124.8 434 28.3
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 3.7e-26 124.8 395 27.8
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.8e-26 124.4 414 28.3
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 4.8e-26 124.4 390 28.2
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 8.2e-26 123.6 402 27.1
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 1.1e-25 123.2 400 27.8
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.8e-25 122.5 384 27.6
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.8e-25 122.5 396 27.8
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 4.0e-25 121.3 390 28.7
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 4.0e-25 121.3 342 30.1
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 4.0e-25 121.3 391 27.6
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 5.3e-25 120.9 394 27.9
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.5e-24 119.4 419 26.7
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 2.0e-24 119.0 389 28.0
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 2.0e-24 119.0 389 28.0
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 2.0e-24 119.0 397 28.0
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 3.4e-24 118.2 436 28.9
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 4.5e-24 117.9 388 27.3
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 4.5e-24 117.9 404 27.7
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 5.8e-24 117.5 400 26.5
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 1.7e-23 115.9 482 27.4
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 1.7e-23 115.9 411 28.0
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 2.9e-23 115.2 403 28.0
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 2.9e-23 115.2 388 27.1
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 8.4e-23 113.6 500 33.0
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 8.4e-23 113.6 449 26.5
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 1.4e-22 112.8 413 27.1
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.5e-22 112.1 399 26.3
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 4.2e-22 111.3 388 28.1
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 4.2e-22 111.3 381 26.0
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 7.1e-22 110.5 401 29.2
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 1.2e-21 109.8 417 26.1
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 1.2e-21 109.8 384 28.1
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 2.1e-21 109.0 317 30.3
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 2.1e-21 109.0 161 39.8
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 2.7e-21 108.6 425 25.4
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 4.6e-21 107.8 160 39.4
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 6.1e-21 107.5 336 28.9
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 7.9e-21 107.1 388 28.4
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 5.1e-20 104.4 159 40.3
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 1.5e-19 102.8 423 27.0
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 1.5e-19 102.8 418 25.8
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 5.7e-19 100.9 151 37.1
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 5.7e-19 100.9 431 26.9
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.6e-18 99.4 431 26.7
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 4.8e-18 97.8 144 39.6
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 4.8e-18 97.8 395 26.8
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 1.5e-16 92.8 393 27.2
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 7.7e-16 90.5 404 25.2
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 5.5e-14 84.3 458 32.8
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 6.1e-13 80.9 146 36.3
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 2.8e-10 72.0 150 30.7
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.4e-09 68.9 83 43.4
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 5.5e-06 57.8 407 31.2


User provided reference genes

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