Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 0.0e+00 1419.1 899 100.0
MCO04G172 Micromonas commoda HOM05D004619 ORTHO05D005738 3.9e-14 84.7 464 27.4
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 5.6e-13 80.9 623 21.5
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 1.2e-12 79.7 623 21.3
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 6.2e-12 77.4 618 21.5
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 6.2e-12 77.4 619 22.5
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 1.4e-11 76.3 620 22.4
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 1.8e-11 75.9 617 21.4
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 1.8e-11 75.9 620 21.6
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 2.4e-11 75.5 617 21.4
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 3.1e-11 75.1 617 23.3
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 4.0e-11 74.7 618 21.4
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 6.8e-11 73.9 618 21.2
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 6.8e-11 73.9 619 22.1
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 8.9e-11 73.6 622 22.2
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 2.0e-10 72.4 621 21.9
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 2.0e-10 72.4 633 22.0
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 4.4e-10 71.2 624 22.1
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 4.4e-10 71.2 622 21.4
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 1.3e-09 69.7 625 21.8
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 2.2e-09 68.9 629 22.1
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.9e-09 68.6 627 22.0
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 3.8e-09 68.2 619 22.8
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 4.9e-09 67.8 631 22.2
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 6.4e-09 67.4 631 22.5
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 6.4e-09 67.4 618 22.8
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 2.4e-08 65.5 622 23.2
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 2.4e-08 65.5 616 21.1
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 3.2e-08 65.1 327 26.0
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 5.4e-08 64.3 618 21.7
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 7.1e-08 63.9 618 21.5
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 1.6e-07 62.8 630 22.2
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 1.6e-07 62.8 625 20.8
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 2.1e-07 62.4 634 21.9
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 3.5e-07 61.6 619 22.3
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 3.5e-07 61.6 625 20.6
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 4.6e-07 61.2 629 22.9
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 6.0e-07 60.8 376 21.8
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 7.8e-07 60.5 625 21.8
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 7.8e-07 60.5 469 21.7
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 7.8e-07 60.5 632 22.0
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 7.8e-07 60.5 486 22.4
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 1.0e-06 60.1 615 21.8
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 1.0e-06 60.1 488 20.5
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 1.0e-06 60.1 623 20.9
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 1.0e-06 60.1 627 21.4
PRCOL_00003296 Prasinoderma coloniale HOM05D004619 ORTHO05D005738 1.0e-06 60.1 396 27.0
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 1.7e-06 59.3 621 21.3
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 3.0e-06 58.5 622 21.7
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 3.0e-06 58.5 624 21.5
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 5.1e-06 57.8 625 21.8
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 5.1e-06 57.8 624 22.4
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 6.6e-06 57.4 638 21.8


User provided reference genes

Program Settings