Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g340750 Chlamydomonas reinhardtii HOM05D040316 ORTHO05D034422 4.6e-126 454.5 223 100.0
MCO02G201 Micromonas commoda HOM05D040316 ORTHO05D034422 1.1e-58 230.7 257 50.6
PRCOL_00000687 Prasinoderma coloniale HOM05D040316 ORTHO05D034422 1.1e-55 220.7 216 52.3
A09p43220 Brassica napus HOM05D003452 ORTHO05D004046 4.9e-11 72.4 157 29.9
BraA09t39792Z Brassica rapa HOM05D003452 ORTHO05D004046 6.5e-11 72.0 157 30.6
BcaC07g39477 Brassica carinata HOM05D003452 ORTHO05D004046 1.1e-10 71.2 157 30.6
BolC8t50143H Brassica oleracea HOM05D003452 ORTHO05D004046 1.1e-10 71.2 157 30.6
PSO447G0386 Papaver somniferum HOM05D003452 ORTHO05D004046 1.1e-10 71.2 160 30.6
PSO700G0024 Papaver somniferum HOM05D003452 ORTHO05D004046 1.4e-10 70.9 163 30.1
PSO210G6200 Papaver somniferum HOM05D003452 ORTHO05D004046 2.5e-10 70.1 165 32.7
AL6G15430 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 3.2e-10 69.7 160 29.4
THA.LOC104805170 Tarenaya hassleriana HOM05D003452 ORTHO05D004046 3.2e-10 69.7 160 28.1
C08p25210 Brassica napus HOM05D003452 ORTHO05D004046 4.2e-10 69.3 157 31.2
AT5G05540 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 9.3e-10 68.2 160 28.8
Thhalv10024938m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 9.3e-10 68.2 161 30.4
THA.LOC104827394 Tarenaya hassleriana HOM05D003452 ORTHO05D004046 9.3e-10 68.2 160 27.5
Aqoxy6G02896 Aquilegia oxysepala HOM05D003452 ORTHO05D004046 2.7e-09 66.6 157 31.8
Carub.0006s0444 Capsella rubella HOM05D003452 ORTHO05D004046 2.7e-09 66.6 157 28.0
Thhalv10011012m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 2.7e-09 66.6 160 27.5
HanXRQChr11g0348391 Helianthus annuus HOM05D003452 ORTHO05D004046 3.5e-09 66.2 160 31.9
AT3G50100 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 4.6e-09 65.9 158 29.7
CARHR207730 Cardamine hirsuta HOM05D003452 ORTHO05D004046 4.6e-09 65.9 161 27.3
Sp7g29190 Schrenkiella parvula HOM05D003452 ORTHO05D004046 4.6e-09 65.9 163 27.6
Sp7g29060 Schrenkiella parvula HOM05D003452 ORTHO05D004046 6.0e-09 65.5 161 29.2
Carub.0005s1644 Capsella rubella HOM05D003452 ORTHO05D004046 7.9e-09 65.1 158 29.1
PSO210G5185 Papaver somniferum HOM05D003452 ORTHO05D004046 7.9e-09 65.1 165 30.3
Sabra07G0043000 Salix brachista HOM05D003452 ORTHO05D004046 7.9e-09 65.1 162 31.5
AL8G44100 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 1.3e-08 64.3 158 31.6
ECA246G2207 Erigeron canadensis HOM05D003452 ORTHO05D004046 1.3e-08 64.3 158 30.4
AT5G67240 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 1.8e-08 63.9 158 30.4
BcaC01g06323 Brassica carinata HOM05D003452 ORTHO05D004046 1.8e-08 63.9 163 27.0
Thhalv10003942m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 1.8e-08 63.9 157 30.6
AL5G30220 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 2.3e-08 63.5 158 29.7
BcaB01g00639 Brassica carinata HOM05D003452 ORTHO05D004046 2.3e-08 63.5 90 35.6
Nn5g30393 Nelumbo nucifera HOM05D003452 ORTHO05D004046 2.3e-08 63.5 165 27.3
Ciclev10025436m.g Citrus clementina HOM05D003452 ORTHO05D004046 3.0e-08 63.2 158 28.5
CARHR280390 Cardamine hirsuta HOM05D003452 ORTHO05D004046 3.9e-08 62.8 157 29.3
CDE10G0659 Ceratophyllum demersum HOM05D003452 ORTHO05D004046 3.9e-08 62.8 133 28.6
Potri.007G048000 Populus trichocarpa HOM05D003452 ORTHO05D004046 5.1e-08 62.4 162 31.5
BolC3t14104H Brassica oleracea HOM05D003452 ORTHO05D004046 6.7e-08 62.0 165 25.5
Cc07_g06390 Coffea canephora HOM05D003452 ORTHO05D004046 6.7e-08 62.0 157 28.0
Sp2g29430 Schrenkiella parvula HOM05D003452 ORTHO05D004046 6.7e-08 62.0 158 29.7
TWI73G0964 Tripterygium wilfordii HOM05D003452 ORTHO05D004046 6.7e-08 62.0 160 29.4
Aqoxy2G00584 Aquilegia oxysepala HOM05D003452 ORTHO05D004046 8.7e-08 61.6 157 30.6
CARHR239210 Cardamine hirsuta HOM05D003452 ORTHO05D004046 8.7e-08 61.6 166 27.7
C07p24440 Brassica napus HOM05D001905 ORTHO05D001820 1.1e-07 61.2 159 32.1
Thhalv10010950m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 1.1e-07 61.2 157 27.4
Aa31LG1G15770 Aethionema arabicum HOM05D003452 ORTHO05D004046 1.5e-07 60.8 166 28.3
Carub.0008s2727 Capsella rubella HOM05D003452 ORTHO05D004046 1.5e-07 60.8 99 34.3
Solyc10g084160.2 Solanum lycopersicum HOM05D003452 ORTHO05D004046 1.5e-07 60.8 157 29.3
Sopen10g033610 Solanum pennellii HOM05D003452 ORTHO05D004046 1.5e-07 60.8 157 29.3
Actinidia36467 Actinidia chinensis HOM05D003452 ORTHO05D004046 1.9e-07 60.5 158 29.7
C03p16820 Brassica napus HOM05D003452 ORTHO05D004046 1.9e-07 60.5 163 25.8
Nitab4.5_0001192g0060 Nicotiana tabacum HOM05D003452 ORTHO05D004046 1.9e-07 60.5 157 26.8
BraA01t02340Z Brassica rapa HOM05D003452 ORTHO05D004046 2.5e-07 60.1 155 27.7
Atru.chr3.258 Acer truncatum HOM05D003452 ORTHO05D004046 3.3e-07 59.7 158 28.5
TPR.G33326 Trifolium pratense HOM05D005364 ORTHO05D006554 3.3e-07 59.7 161 28.6
Actinidia12025 Actinidia chinensis HOM05D003452 ORTHO05D004046 4.3e-07 59.3 158 29.1
BcaC06g34807 Brassica carinata HOM05D001905 ORTHO05D001820 5.7e-07 58.9 99 33.3
Psat6g039520 Pisum sativum HOM05D005364 ORTHO05D006554 7.4e-07 58.5 157 28.0
vmacro05258 Vaccinium macrocarpon HOM05D003452 ORTHO05D004046 7.4e-07 58.5 162 29.6
AagrBONN_evm.TU.Sc2ySwM_344.2478 Anthoceros agrestis HOM05D005364 ORTHO05D006554 9.6e-07 58.2 157 26.8
DCAR_010856 Daucus carota HOM05D003452 ORTHO05D004046 9.6e-07 58.2 157 28.7
Peaxi162Scf00472g00008 Petunia axillaris HOM05D003452 ORTHO05D004046 9.6e-07 58.2 157 27.4
SEGI_05143 Sequoiadendron giganteum HOM05D003452 ORTHO05D004046 9.6e-07 58.2 157 28.7
TPR.G6534 Trifolium pratense HOM05D001511 ORTHO05D002368 9.6e-07 58.2 180 28.3
BcaB01g04320 Brassica carinata HOM05D003452 ORTHO05D004046 1.3e-06 57.8 167 25.1
Psat5g293240 Pisum sativum HOM05D001511 ORTHO05D002368 1.3e-06 57.8 108 36.1
A07p16710 Brassica napus HOM05D001905 ORTHO05D001820 1.6e-06 57.4 99 33.3
BraA07t29394Z Brassica rapa HOM05D001905 ORTHO05D001820 1.6e-06 57.4 99 33.3
Sp5g12020 Schrenkiella parvula HOM05D003452 ORTHO05D004046 1.6e-06 57.4 90 31.1
Cre01.g036600 Chlamydomonas reinhardtii HOM05D003452 ORTHO05D004046 2.1e-06 57.0 183 32.2
Lj7A76T78 Lonicera japonica HOM05D003452 ORTHO05D004046 2.1e-06 57.0 164 28.0
Lj7A83T65 Lonicera japonica HOM05D003452 ORTHO05D004046 2.1e-06 57.0 164 28.0
BcaB02g09943 Brassica carinata HOM05D003452 ORTHO05D004046 2.8e-06 56.6 99 33.3
Cre11.g480060 Chlamydomonas reinhardtii HOM05D001511 ORTHO05D009027 2.8e-06 56.6 166 30.1
PSO210G3568 Papaver somniferum HOM05D003452 ORTHO05D004046 2.8e-06 56.6 157 27.4
Prupe.6G230000 Prunus persica HOM05D003452 ORTHO05D004046 2.8e-06 56.6 158 27.8
PGSC0003DMG400010461 Solanum tuberosum HOM05D003452 ORTHO05D004046 2.8e-06 56.6 157 28.0
BraA07t29398Z Brassica rapa HOM05D003452 ORTHO05D004046 3.7e-06 56.2 75 33.3
Medtr2g100280 Medicago truncatula HOM05D001511 ORTHO05D002368 3.7e-06 56.2 109 33.0
PSO170G4023 Papaver somniferum HOM05D003452 ORTHO05D004046 3.7e-06 56.2 157 26.8
TWI34G0076 Tripterygium wilfordii HOM05D005364 ORTHO05D006554 3.7e-06 56.2 157 28.0
VMungo0251G0295 Vigna mungo HOM05D003452 ORTHO05D004046 3.7e-06 56.2 97 37.1
Glyma.13G351300 Glycine max HOM05D001511 ORTHO05D002368 4.8e-06 55.8 180 27.8
Oeu008437.1 Olea europaea HOM05D003452 ORTHO05D004046 4.8e-06 55.8 157 25.5
TAR381G1138 Trochodendron aralioides HOM05D003452 ORTHO05D004046 4.8e-06 55.8 158 29.1
GSVIVG01000228001 Vitis vinifera HOM05D003452 ORTHO05D004046 4.8e-06 55.8 157 27.4
EL10Ac6g15698 Beta vulgaris HOM05D003452 ORTHO05D004046 6.3e-06 55.5 102 33.3
BcaC09g50010 Brassica carinata HOM05D003452 ORTHO05D004046 8.2e-06 55.1 90 30.0
C01p30070 Brassica napus HOM05D003452 ORTHO05D004046 8.2e-06 55.1 90 30.0
BolC1t02949H Brassica oleracea HOM05D003452 ORTHO05D004046 8.2e-06 55.1 90 30.0
BolC7t42964H Brassica oleracea HOM05D001905 ORTHO05D001820 8.2e-06 55.1 164 31.1
CAN.G1778.2 Capsicum annuum HOM05D003452 ORTHO05D004046 8.2e-06 55.1 157 26.1
Cfa004056 Carpinus fangiana HOM05D003452 ORTHO05D004046 8.2e-06 55.1 157 26.8
Migut.H00401 Erythranthe guttata HOM05D003452 ORTHO05D004046 8.2e-06 55.1 160 27.5
Glyma.15G023300 Glycine max HOM05D001511 ORTHO05D002368 8.2e-06 55.1 180 27.8
Nitab4.5_0001297g0030 Nicotiana tabacum HOM05D003452 ORTHO05D004046 8.2e-06 55.1 157 26.1


User provided reference genes

Program Settings