Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 2.5e-157 559.3 426 100.0
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 9.8e-16 89.0 127 37.0
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 1.3e-15 88.6 133 39.1
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 8.3e-15 85.9 276 43.5
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 1.4e-14 85.1 125 38.4
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 1.8e-14 84.7 120 39.2
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 2.4e-14 84.3 127 37.0
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 2.4e-14 84.3 120 35.8
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 2.4e-14 84.3 120 36.7
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 2.4e-14 84.3 127 39.4
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 3.1e-14 84.0 120 39.2
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 4.1e-14 83.6 123 37.4
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 4.1e-14 83.6 125 37.6
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 7.0e-14 82.8 120 39.2
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 9.1e-14 82.4 278 44.2
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 9.1e-14 82.4 127 36.2
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 1.2e-13 82.0 127 35.4
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 2.0e-13 81.3 123 37.4
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 2.0e-13 81.3 125 37.6
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 2.0e-13 81.3 128 36.7
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 2.7e-13 80.9 126 39.7
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 2.7e-13 80.9 125 37.6
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 4.5e-13 80.1 120 35.0
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 5.9e-13 79.7 132 34.1
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 7.7e-13 79.3 281 44.5
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 7.7e-13 79.3 125 38.4
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 1.3e-12 78.6 126 37.3
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.3e-12 78.6 276 44.9
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 1.3e-12 78.6 134 32.1
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 1.7e-12 78.2 277 40.8
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.7e-12 78.2 125 37.6
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 1.7e-12 78.2 123 34.1
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.7e-12 78.2 128 35.2
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 2.2e-12 77.8 424 24.8
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.9e-12 77.4 133 32.3
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 2.9e-12 77.4 127 36.2
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 2.9e-12 77.4 130 37.7
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 2.9e-12 77.4 125 38.4
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.9e-12 77.4 128 34.4
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 3.8e-12 77.0 124 36.3
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 3.8e-12 77.0 128 33.6
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 3.8e-12 77.0 77 44.2
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 5.0e-12 76.6 127 35.4
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 5.0e-12 76.6 283 42.0
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 5.0e-12 76.6 245 39.6
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 6.5e-12 76.3 122 34.4
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 6.5e-12 76.3 234 46.6
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 8.5e-12 75.9 274 42.7
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 8.5e-12 75.9 124 35.5
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 8.5e-12 75.9 123 36.6
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 8.5e-12 75.9 282 41.5
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 8.5e-12 75.9 123 33.3
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 1.1e-11 75.5 124 36.3
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 1.1e-11 75.5 128 35.9
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.5e-11 75.1 127 34.6
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 1.5e-11 75.1 124 35.5
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.5e-11 75.1 124 35.5
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 1.5e-11 75.1 124 35.5
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.5e-11 75.1 123 34.1
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.5e-11 75.1 287 44.3
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 1.9e-11 74.7 124 35.5
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 1.9e-11 74.7 124 35.5
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 1.9e-11 74.7 125 35.2
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 1.9e-11 74.7 127 35.4
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.9e-11 74.7 274 44.5
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.5e-11 74.3 123 34.1
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 2.5e-11 74.3 123 34.1
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 2.5e-11 74.3 121 34.7
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 3.2e-11 73.9 124 35.5
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 3.2e-11 73.9 129 36.4
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 3.2e-11 73.9 275 39.6
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.2e-11 73.9 123 34.1
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 3.2e-11 73.9 123 34.1
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 3.2e-11 73.9 121 36.4
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 4.2e-11 73.6 123 35.0
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 4.2e-11 73.6 128 34.4
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 4.2e-11 73.6 118 36.4
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.5e-11 73.2 133 32.3
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 5.5e-11 73.2 124 34.7
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 7.2e-11 72.8 123 33.3
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 7.2e-11 72.8 126 35.7
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 9.4e-11 72.4 123 33.3
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 9.4e-11 72.4 123 33.3
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 9.4e-11 72.4 133 35.3
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 9.4e-11 72.4 124 34.7
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 1.2e-10 72.0 125 35.2
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.2e-10 72.0 126 34.1
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.6e-10 71.6 277 31.0
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 1.6e-10 71.6 124 34.7
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 2.1e-10 71.2 127 33.9
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 2.1e-10 71.2 124 34.7
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 2.7e-10 70.9 125 33.6
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 2.7e-10 70.9 124 34.7
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.7e-10 70.9 132 34.8
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 2.7e-10 70.9 133 33.1
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 2.7e-10 70.9 128 34.4
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 2.7e-10 70.9 123 31.7
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 3.6e-10 70.5 123 34.1
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 4.7e-10 70.1 123 33.3
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 8.0e-10 69.3 123 35.8
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 1.0e-09 68.9 123 35.8
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.0e-09 68.9 130 31.5
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.0e-09 68.9 131 32.1
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 1.0e-09 68.9 127 33.1
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.0e-09 68.9 123 33.3
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 1.0e-09 68.9 126 34.1
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.3e-09 67.8 130 36.2
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.3e-09 67.8 127 34.6
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 2.3e-09 67.8 137 32.1
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 5.2e-09 66.6 121 35.5
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 5.2e-09 66.6 132 34.1
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 6.8e-09 66.2 123 30.1
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 6.8e-09 66.2 123 33.3
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 8.8e-09 65.9 128 32.0
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.5e-08 65.1 126 34.1
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 4.4e-08 63.5 460 24.1
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 4.4e-08 63.5 132 31.8
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 2.8e-07 60.8 83 36.1
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 1.4e-06 58.5 127 31.5
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 1.8e-06 58.2 162 25.9
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 3.1e-06 57.4 131 28.2


User provided reference genes

Program Settings