Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g269601 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 3.1e-83 311.6 144 100.0
Cre06.g269650 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 2.8e-39 165.6 78 97.4
Cre09.g415600 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 1.9e-11 73.2 88 39.8
arahy.Tifrunner.gnm1.ann1.TSB66L Arachis hypogaea HOM05D003809 ORTHO05D003935 1.6e-10 70.1 71 40.8
arahy.Tifrunner.gnm1.ann1.31N575 Arachis hypogaea HOM05D003809 ORTHO05D003935 4.6e-10 68.6 71 40.8
arahy.Tifrunner.gnm1.ann1.3JQR8Y Arachis hypogaea HOM05D003809 ORTHO05D003935 4.6e-10 68.6 71 40.8
SMO142G0031 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 4.6e-10 68.6 86 36.0
SMO358G0668 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 4.6e-10 68.6 86 36.0
VMungo0331G1847 Vigna mungo HOM05D003809 ORTHO05D003935 7.9e-10 67.8 73 38.4
THA.LOC104816652 Tarenaya hassleriana HOM05D003809 ORTHO05D003935 2.3e-09 66.2 72 40.3
Pp3c6_22980 Physcomitrium patens HOM05D003809 ORTHO05D003935 5.1e-09 65.1 71 42.3
Sc07g0006540 Simmondsia chinensis HOM05D003809 ORTHO05D003935 5.1e-09 65.1 57 43.9
AagrBONN_evm.TU.Sc2ySwM_344.3507 Anthoceros agrestis HOM05D003809 ORTHO05D003935 6.7e-09 64.7 71 40.8
vmacro08854 Vaccinium macrocarpon HOM05D003809 ORTHO05D003935 6.7e-09 64.7 72 37.5
TPR.G13325 Trifolium pratense HOM05D003809 ORTHO05D003935 8.7e-09 64.3 73 37.0
Phvul.010G002900 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 1.1e-08 63.9 72 36.1
SEGI_39495 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 1.1e-08 63.9 75 42.7
Lj1g0000205 Lotus japonicus HOM05D003809 ORTHO05D003935 1.5e-08 63.5 87 32.2
Pp3c16_3300 Physcomitrium patens HOM05D003809 ORTHO05D003935 1.5e-08 63.5 74 41.9
VMungo1383G0216 Vigna mungo HOM05D003809 ORTHO05D003935 1.5e-08 63.5 72 41.7
Cre02.g091750 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 1.9e-08 63.2 92 34.8
ATR0618G237 Amborella trichopoda HOM05D003809 ORTHO05D003935 2.5e-08 62.8 71 38.0
Mapoly0033s0050 Marchantia polymorpha HOM05D003809 ORTHO05D003935 2.5e-08 62.8 72 36.1
C03p00540 Brassica napus HOM05D003809 ORTHO05D003935 3.3e-08 62.4 72 37.5
BolC3t12620H Brassica oleracea HOM05D003809 ORTHO05D003935 3.3e-08 62.4 72 37.5
Ciclev10011409m.g Citrus clementina HOM05D003809 ORTHO05D003935 3.3e-08 62.4 73 37.0
Aa31LG1G22880 Aethionema arabicum HOM05D003809 ORTHO05D003935 5.6e-08 61.6 78 35.9
CSS0024242 Camellia sinensis var. sinensis HOM05D003809 ORTHO05D003935 5.6e-08 61.6 78 34.6
Os05g0446900 Oryza sativa ssp. japonica HOM05D003809 ORTHO05D003935 5.6e-08 61.6 55 47.3
Phvul.008G105500 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 5.6e-08 61.6 72 38.9
SalBow4G1747 Salvia bowleyana HOM05D003809 ORTHO05D003935 5.6e-08 61.6 71 38.0
Hma1.2p1_0362F.1_g136090 Hydrangea macrophylla HOM05D003809 ORTHO05D003935 7.4e-08 61.2 84 33.3
MCO16G173 Micromonas commoda HOM05D003809 ORTHO05D003935 7.4e-08 61.2 90 35.6
A03p00380 Brassica napus HOM05D003809 ORTHO05D003935 9.6e-08 60.8 72 36.1
BraA03t09429Z Brassica rapa HOM05D003809 ORTHO05D003935 9.6e-08 60.8 72 36.1
CDE04G0185 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 9.6e-08 60.8 71 38.0
Rhsim13G0070300 Rhododendron simsii HOM05D003809 ORTHO05D003935 9.6e-08 60.8 73 34.2
Sed0014073 Sechium edule HOM05D003809 ORTHO05D003935 9.6e-08 60.8 90 33.3
Eucgr.K02988 Eucalyptus grandis HOM05D003809 ORTHO05D003935 1.3e-07 60.5 73 28.8
Prupe.6G058700 Prunus persica HOM05D003809 ORTHO05D003935 1.3e-07 60.5 73 32.9
Pp3c23_18810 Physcomitrium patens HOM05D028458 ORTHO05D003935 1.6e-07 60.1 92 34.8
Actinidia20726 Actinidia chinensis HOM05D003809 ORTHO05D003935 2.1e-07 59.7 78 33.3
MSTRG.10226 Avicennia marina HOM05D003809 ORTHO05D003935 2.1e-07 59.7 72 37.5
BcaNung06532 Brassica carinata HOM05D003809 ORTHO05D003935 2.1e-07 59.7 72 36.1
Cre09.g407501 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 2.1e-07 59.7 63 42.9
Glyma.03G062500 Glycine max HOM05D003809 ORTHO05D003935 2.1e-07 59.7 72 34.7
AL6G10910 Arabidopsis lyrata HOM05D003809 ORTHO05D003935 2.8e-07 59.3 78 33.3
Lj3g0017704 Lotus japonicus HOM05D003809 ORTHO05D003935 2.8e-07 59.3 73 32.9
Lalb_Chr01g0022961 Lupinus albus HOM05D003809 ORTHO05D003935 2.8e-07 59.3 79 30.4
Lalb_Chr03g0043131 Lupinus albus HOM05D003809 ORTHO05D003935 2.8e-07 59.3 72 33.3
Cpa.g.sc163.14 Carica papaya HOM05D003809 ORTHO05D003935 3.7e-07 58.9 77 39.0
CDE03G0216 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 3.7e-07 58.9 71 36.6
Zm00001eb367050 Zea mays HOM05D003809 ORTHO05D003935 3.7e-07 58.9 73 37.0
Atru.chr8.2220 Acer truncatum HOM05D003809 ORTHO05D003935 4.8e-07 58.5 83 30.1
Glyma.03G062800 Glycine max HOM05D003809 ORTHO05D003935 4.8e-07 58.5 72 33.3
PRCOL_00004061 Prasinoderma coloniale HOM05D003809 ORTHO05D003935 4.8e-07 58.5 58 44.8
Medtr4g015550 Medicago truncatula HOM05D003809 ORTHO05D003935 6.2e-07 58.2 73 35.6
Glyma.03G061700 Glycine max HOM05D003809 ORTHO05D003935 8.1e-07 57.8 72 33.3
Glyma.03G061802 Glycine max HOM05D003809 ORTHO05D003935 8.1e-07 57.8 72 33.3
Glyma.03G061852 Glycine max HOM05D003809 ORTHO05D003935 8.1e-07 57.8 72 33.3
Glyma.03G062100 Glycine max HOM05D003809 ORTHO05D003935 8.1e-07 57.8 72 33.3
Glyma.03G062300 Glycine max HOM05D003809 ORTHO05D003935 8.1e-07 57.8 72 33.3
Glyma.U024600 Glycine max HOM05D003809 ORTHO05D003935 1.1e-06 57.4 72 33.3
Potri.009G044800 Populus trichocarpa HOM05D003809 ORTHO05D003935 1.1e-06 57.4 73 31.5
Sp6g40590 Schrenkiella parvula HOM05D003809 ORTHO05D003935 1.1e-06 57.4 72 34.7
AT5G01260 Arabidopsis thaliana HOM05D003809 ORTHO05D003935 1.4e-06 57.0 78 32.1
Cc01_g20760 Coffea canephora HOM05D003809 ORTHO05D003935 1.4e-06 57.0 72 34.7
Cc06_g01490 Coffea canephora HOM05D003809 ORTHO05D003935 1.4e-06 57.0 72 34.7
FAN21G3156 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.4e-06 57.0 73 30.1
FAN25G1218 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.4e-06 57.0 73 30.1
Glyma.03G063000 Glycine max HOM05D003809 ORTHO05D003935 1.4e-06 57.0 72 31.9
MD04G1150500 Malus domestica HOM05D003809 ORTHO05D003935 1.4e-06 57.0 69 33.3
SGA_v2.0_scaffold240G44100 Striga asiatica HOM05D003809 ORTHO05D003935 1.4e-06 57.0 72 34.7
Carub.0006s0062 Capsella rubella HOM05D003809 ORTHO05D003935 1.8e-06 56.6 78 32.1
Cpa.g.sc112.34 Carica papaya HOM05D003809 ORTHO05D003935 1.8e-06 56.6 73 30.1
MELO3C009176.2 Cucumis melo HOM05D003809 ORTHO05D003935 1.8e-06 56.6 70 32.9
FAN16G0765 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.8e-06 56.6 73 30.1
Glyma.01G115000 Glycine max HOM05D003809 ORTHO05D003935 1.8e-06 56.6 73 32.9
MCO16G448 Micromonas commoda HOM05D003809 ORTHO05D003935 1.8e-06 56.6 58 39.7
Nn2g11447 Nelumbo nucifera HOM05D003809 ORTHO05D003935 1.8e-06 56.6 73 32.9
Nn2g13682 Nelumbo nucifera HOM05D003809 ORTHO05D003935 1.8e-06 56.6 72 36.1
Ca_20297_v3 Cicer arietinum L. HOM05D003809 ORTHO05D003935 2.4e-06 56.2 73 31.5
Peaxi162Scf00141g00342 Petunia axillaris HOM05D003809 ORTHO05D003935 2.4e-06 56.2 73 32.9
Sabra09G0032300 Salix brachista HOM05D000001 ORTHO05D000003 2.4e-06 56.2 73 31.5
CiPaw.09G207900 Carya illinoinensis HOM05D003809 ORTHO05D003935 3.1e-06 55.8 72 31.9
ClCG10G022040 Citrullus lanatus HOM05D003809 ORTHO05D003935 3.1e-06 55.8 70 31.4
FvH4_3g38430 Fragaria vesca HOM05D003809 ORTHO05D003935 3.1e-06 55.8 73 30.1
FAN11G1208 Fragaria x ananassa HOM05D003809 ORTHO05D003935 3.1e-06 55.8 73 30.1
MD12G1164600 Malus domestica HOM05D003809 ORTHO05D003935 3.1e-06 55.8 69 33.3
Nitab4.5_0000335g0110 Nicotiana tabacum HOM05D003809 ORTHO05D003935 3.1e-06 55.8 73 31.5
Sed0009856 Sechium edule HOM05D003809 ORTHO05D003935 3.1e-06 55.8 72 29.2
THA.LOC104822294 Tarenaya hassleriana HOM05D001235 ORTHO05D005684 3.1e-06 55.8 70 40.0
Os01g0856900 Oryza sativa ssp. japonica HOM05D003809 ORTHO05D003935 4.0e-06 55.5 85 30.6
Nitab4.5_0008420g0020 Nicotiana tabacum HOM05D003809 ORTHO05D003935 5.3e-06 55.1 73 31.5
COL.COLO4_14553 Corchorus olitorius HOM05D003809 ORTHO05D003935 6.9e-06 54.7 72 31.9
CsaV3_3G033890 Cucumis sativus L. HOM05D003809 ORTHO05D003935 6.9e-06 54.7 70 32.9
MBI05_g34490_MAGBIO Magnolia biondii HOM05D003809 ORTHO05D003935 6.9e-06 54.7 72 33.3
Prupe.6G275300 Prunus persica HOM05D003809 ORTHO05D003935 6.9e-06 54.7 52 38.5
CANSAT35G1529 Cannabis sativa HOM05D003809 ORTHO05D003935 9.0e-06 54.3 72 33.3
PSO339G2972 Papaver somniferum HOM05D003809 ORTHO05D003935 9.0e-06 54.3 53 37.7
PSO566G0289 Papaver somniferum HOM05D003809 ORTHO05D003935 9.0e-06 54.3 70 32.9
Psat7g246040 Pisum sativum HOM05D003809 ORTHO05D003935 9.0e-06 54.3 73 31.5
TAR369G0780 Trochodendron aralioides HOM05D003809 ORTHO05D003935 9.0e-06 54.3 69 34.8
TAR369G1072 Trochodendron aralioides HOM05D003809 ORTHO05D003935 9.0e-06 54.3 69 34.8
TAR623G0913 Trochodendron aralioides HOM05D003809 ORTHO05D003935 9.0e-06 54.3 71 33.8


User provided reference genes

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