Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g264500 Chlamydomonas reinhardtii HOM05D005088 ORTHO05D006914 6.3e-154 548.1 460 100.0
Pp3c15_21890 Physcomitrium patens HOM05D005088 ORTHO05D006914 3.8e-58 229.9 254 50.8
CsaV3_5G026950 Cucumis sativus L. HOM05D005088 ORTHO05D006914 1.5e-54 218.0 181 60.8
Mapoly0020s0128 Marchantia polymorpha HOM05D005088 ORTHO05D006914 9.7e-54 215.3 235 48.9
CBR_g229 Chara braunii HOM05D005088 ORTHO05D006914 2.2e-53 214.2 178 59.0
Cc00_g04470 Coffea canephora HOM05D005088 ORTHO05D006914 3.7e-53 213.4 179 61.5
Manes.15G152700 Manihot esculenta HOM05D005088 ORTHO05D006914 1.8e-52 211.1 189 56.1
Actinidia36135 Actinidia chinensis HOM05D005088 ORTHO05D006914 3.1e-52 210.3 159 63.5
Ciclev10015979m.g Citrus clementina HOM05D005088 ORTHO05D006914 5.3e-52 209.5 186 59.1
TAR371G0548 Trochodendron aralioides HOM05D005088 ORTHO05D006914 5.3e-52 209.5 175 61.1
Hma1.2p1_0587F.1_g183900 Hydrangea macrophylla HOM05D005088 ORTHO05D006914 9.1e-52 208.8 185 56.2
MCO13G391 Micromonas commoda HOM05D005088 ORTHO05D006914 9.1e-52 208.8 169 58.6
ATR1136G111 Amborella trichopoda HOM05D005088 ORTHO05D006914 1.2e-51 208.4 180 57.2
ClCG09G019430 Citrullus lanatus HOM05D005088 ORTHO05D006914 1.2e-51 208.4 181 58.0
Sc14g0003070 Simmondsia chinensis HOM05D005088 ORTHO05D006914 2.0e-51 207.6 169 60.9
MELO3C021598.2 Cucumis melo HOM05D005088 ORTHO05D006914 2.7e-51 207.2 181 58.0
CSS0015220 Camellia sinensis var. sinensis HOM05D005088 ORTHO05D006914 3.5e-51 206.8 170 60.0
vmacro05886 Vaccinium macrocarpon HOM05D005088 ORTHO05D006914 3.5e-51 206.8 174 59.2
Nn2g12382 Nelumbo nucifera HOM05D005088 ORTHO05D006914 4.5e-51 206.5 181 56.4
unitig_748.g6973 Utricularia gibba HOM05D005088 ORTHO05D006914 4.5e-51 206.5 174 59.2
Migut.H00031 Erythranthe guttata HOM05D005088 ORTHO05D006914 7.7e-51 205.7 161 61.5
SEGI_26999 Sequoiadendron giganteum HOM05D005088 ORTHO05D006914 1.0e-50 205.3 187 55.1
SalBow8G2200 Salvia bowleyana HOM05D005088 ORTHO05D006914 2.2e-50 204.1 169 58.0
Sed0009164 Sechium edule HOM05D005088 ORTHO05D006914 2.9e-50 203.8 181 57.5
SalBow4G2808 Salvia bowleyana HOM05D005088 ORTHO05D006914 5.0e-50 203.0 160 60.6
GSVIVG01008659001 Vitis vinifera HOM05D005088 ORTHO05D006914 6.5e-50 202.6 159 61.0
Lsat_1_v5_gn_7_9521 Lactuca sativa HOM05D005088 ORTHO05D006914 1.9e-49 201.1 176 56.8
Oeu013966.1 Olea europaea HOM05D005088 ORTHO05D006914 1.9e-49 201.1 161 59.6
RhsimUnG0087300 Rhododendron simsii HOM05D005088 ORTHO05D006914 1.9e-49 201.1 159 61.0
ECA236G2300 Erigeron canadensis HOM05D005088 ORTHO05D006914 3.2e-49 200.3 176 56.8
RhsimUnG0006300 Rhododendron simsii HOM05D005088 ORTHO05D006914 5.5e-49 199.5 159 60.4
Cpa.g.sc130.68 Carica papaya HOM05D005088 ORTHO05D006914 7.2e-49 199.1 180 56.1
PGR142G2056 Punica granatum HOM05D005088 ORTHO05D006914 7.2e-49 199.1 180 56.1
CANSAT64G2170 Cannabis sativa HOM05D005088 ORTHO05D006914 9.4e-49 198.7 174 58.6
Lj7A602T41 Lonicera japonica HOM05D005088 ORTHO05D006914 1.2e-48 198.4 157 61.1
CiPaw.03G046700 Carya illinoinensis HOM05D005088 ORTHO05D006914 2.1e-48 197.6 180 57.8
Haze_14769 Corylus avellana HOM05D005088 ORTHO05D006914 2.1e-48 197.6 174 56.3
HanXRQChr04g0122711 Helianthus annuus HOM05D005088 ORTHO05D006914 2.1e-48 197.6 176 54.5
Thhalv10006186m.g Eutrema salsugineum HOM05D005088 ORTHO05D006914 3.6e-48 196.8 173 58.4
Prupe.3G295300 Prunus persica HOM05D005088 ORTHO05D006914 3.6e-48 196.8 169 57.4
VMungo0464G1582 Vigna mungo HOM05D005088 ORTHO05D006914 8.0e-48 195.7 179 52.0
THA.LOC104820717 Tarenaya hassleriana HOM05D005088 ORTHO05D006914 1.0e-47 195.3 179 54.7
Ah.15g098720 Amaranthus hybridus HOM05D005088 ORTHO05D006914 1.4e-47 194.9 181 54.1
TWI63G0383 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 1.4e-47 194.9 175 54.9
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 2.3e-47 194.1 155 60.6
CDE02G1254 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 2.3e-47 194.1 163 57.1
Aa31LG2G11590 Aethionema arabicum HOM05D005088 ORTHO05D006914 3.0e-47 193.7 184 54.3
EL10Ac6g15396 Beta vulgaris HOM05D005088 ORTHO05D006914 4.0e-47 193.4 156 59.6
Atru.chr6.2443 Acer truncatum HOM05D005088 ORTHO05D006914 6.8e-47 192.6 163 58.3
DCAR_011267 Daucus carota HOM05D005088 ORTHO05D006914 8.8e-47 192.2 179 57.0
TWI73G1260 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 1.2e-46 191.8 175 54.9
CANSAT64G1390 Cannabis sativa HOM05D005088 ORTHO05D006914 1.5e-46 191.4 174 56.3
arahy.Tifrunner.gnm1.ann1.NQR6QW Arachis hypogaea HOM05D005088 ORTHO05D006914 2.6e-46 190.7 177 53.1
Carub.0005s2328 Capsella rubella HOM05D005088 ORTHO05D006914 2.6e-46 190.7 166 57.8
Lalb_Chr06g0174471 Lupinus albus HOM05D005088 ORTHO05D006914 2.6e-46 190.7 174 53.4
CARHR166630 Cardamine hirsuta HOM05D005088 ORTHO05D006914 9.8e-46 188.7 158 58.9
AT3G56510 Arabidopsis thaliana HOM05D005088 ORTHO05D006914 1.3e-45 188.3 173 54.9
arahy.Tifrunner.gnm1.ann1.XI631Y Arachis hypogaea HOM05D005088 ORTHO05D006914 2.8e-45 187.2 179 52.0
MD17G1021200 Malus domestica HOM05D005088 ORTHO05D006914 2.8e-45 187.2 174 52.9
Solyc10g008130.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 3.7e-45 186.8 176 53.4
Sopen01g054060 Solanum pennellii HOM05D005088 ORTHO05D006914 3.7e-45 186.8 175 54.9
Sopen10g004000 Solanum pennellii HOM05D005088 ORTHO05D006914 3.7e-45 186.8 176 53.4
PGSC0003DMG400021851 Solanum tuberosum HOM05D005088 ORTHO05D006914 3.7e-45 186.8 176 53.4
Potri.001G341300 Populus trichocarpa HOM05D005088 ORTHO05D006914 4.8e-45 186.4 176 52.3
arahy.Tifrunner.gnm1.ann1.NBA2EB Arachis hypogaea HOM05D005088 ORTHO05D006914 6.3e-45 186.0 159 56.0
Sabra16G0221300 Salix brachista HOM05D005088 ORTHO05D006914 6.3e-45 186.0 176 51.7
Duzib147G1185 Durio zibethinus HOM05D005088 ORTHO05D006914 8.3e-45 185.7 178 54.5
Aqoxy7G00744 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 1.1e-44 185.3 177 51.4
Aqoxy5G03675 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 1.4e-44 184.9 177 51.4
AL5G37860 Arabidopsis lyrata HOM05D005088 ORTHO05D006914 1.4e-44 184.9 166 55.4
BcaC07g39962 Brassica carinata HOM05D005088 ORTHO05D006914 1.4e-44 184.9 155 58.7
BcaNung07365 Brassica carinata HOM05D005088 ORTHO05D006914 1.4e-44 184.9 168 56.5
A09p49430 Brassica napus HOM05D005088 ORTHO05D006914 1.4e-44 184.9 155 58.7
BolC8t50800H Brassica oleracea HOM05D005088 ORTHO05D006914 1.4e-44 184.9 155 58.7
BraA09t40396Z Brassica rapa HOM05D005088 ORTHO05D006914 1.4e-44 184.9 155 58.7
MD09G1021000 Malus domestica HOM05D005088 ORTHO05D006914 2.4e-44 184.1 169 52.7
Ciclev10017686m.g Citrus clementina HOM05D005088 ORTHO05D006914 7.0e-44 182.6 182 54.9
HPP92_010722 Vanilla planifolia HOM05D005088 ORTHO05D006914 7.0e-44 182.6 174 51.7
Phvul.004G060300 Phaseolus vulgaris HOM05D005088 ORTHO05D006914 9.1e-44 182.2 156 57.1
Ca_04381_v3 Cicer arietinum L. HOM05D005088 ORTHO05D006914 1.2e-43 181.8 157 55.4
Glyma.05G115100 Glycine max HOM05D005088 ORTHO05D006914 1.6e-43 181.4 179 49.7
Dinv22813 Davidia involucrata HOM05D005088 ORTHO05D006914 2.0e-43 181.0 144 61.8
Glyma.19G052200 Glycine max HOM05D005088 ORTHO05D006914 2.0e-43 181.0 161 53.4
PSO063G5784 Papaver somniferum HOM05D005088 ORTHO05D006914 2.7e-43 180.6 164 54.9
Psat1g081640 Pisum sativum HOM05D005088 ORTHO05D006914 2.7e-43 180.6 161 53.4
Medtr6g021760 Medicago truncatula HOM05D005088 ORTHO05D006914 4.5e-43 179.9 159 54.1
Nitab4.5_0006683g0110 Nicotiana tabacum HOM05D005088 ORTHO05D006914 7.7e-43 179.1 176 51.1
Thecc.04G021300 Theobroma cacao HOM05D005088 ORTHO05D006914 1.0e-42 178.7 161 55.9
Nitab4.5_0001562g0080 Nicotiana tabacum HOM05D005088 ORTHO05D006914 1.3e-42 178.3 176 50.6
Peaxi162Scf00420g00135 Petunia axillaris HOM05D005088 ORTHO05D006914 1.3e-42 178.3 176 50.0
Gohir.A07G224400 Gossypium hirsutum HOM05D005088 ORTHO05D006914 1.7e-42 177.9 161 54.7
Gohir.D07G231700 Gossypium hirsutum HOM05D005088 ORTHO05D006914 1.7e-42 177.9 161 54.7
Gorai.001G266900 Gossypium raimondii HOM05D005088 ORTHO05D006914 2.3e-42 177.6 161 54.7
PSO754G0075 Papaver somniferum HOM05D005088 ORTHO05D006914 2.3e-42 177.6 180 52.2
QL02p073814 Quercus lobata HOM05D005088 ORTHO05D006914 2.3e-42 177.6 176 52.8
Nitab4.5_0001357g0120 Nicotiana tabacum HOM05D005088 ORTHO05D006914 5.0e-42 176.4 176 50.6
Lj4g0026117 Lotus japonicus HOM05D005088 ORTHO05D006914 8.6e-42 175.6 161 52.8
FvH4_6g52000 Fragaria vesca HOM05D005088 ORTHO05D006914 3.3e-41 173.7 179 51.4
FAN14G4588 Fragaria x ananassa HOM05D005088 ORTHO05D006914 3.3e-41 173.7 179 51.4
Nitab4.5_0006478g0030 Nicotiana tabacum HOM05D005088 ORTHO05D006914 3.3e-41 173.7 176 50.0
RcHm_v2.0_Chr2g0173471 Rosa chinensis HOM05D005088 ORTHO05D006914 4.2e-41 173.3 155 54.2
FAN02G1545 Fragaria x ananassa HOM05D005088 ORTHO05D006914 9.5e-41 172.2 155 54.8
C08p31790 Brassica napus HOM05D005088 ORTHO05D006914 1.6e-40 171.4 179 50.8
FAN05G1017 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.6e-40 171.4 179 50.8
PSO210G1672 Papaver somniferum HOM05D005088 ORTHO05D006914 2.1e-40 171.0 165 50.3
PGSC0003DMG400018652 Solanum tuberosum HOM05D005088 ORTHO05D006914 2.1e-40 171.0 177 51.4
FAN09G0922 Fragaria x ananassa HOM05D005088 ORTHO05D006914 4.7e-40 169.9 155 54.2
SMO347G0658 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 8.0e-40 169.1 126 67.5
PSO210G5838 Papaver somniferum HOM05D005088 ORTHO05D006914 1.4e-39 168.3 165 50.3
BcaNung07083 Brassica carinata HOM05D005088 ORTHO05D006914 4.4e-38 163.3 139 58.3
PGSC0003DMG400010550 Solanum tuberosum HOM05D005088 ORTHO05D006914 4.4e-38 163.3 140 57.1
HPP92_010645 Vanilla planifolia HOM05D005088 ORTHO05D006914 1.1e-36 158.7 144 53.5
Os07g0662600 Oryza sativa ssp. japonica HOM05D005088 ORTHO05D006914 1.4e-36 158.3 162 48.1
Zm00001eb110920 Zea mays HOM05D005088 ORTHO05D006914 2.4e-36 157.5 162 46.9
TAR629G1146 Trochodendron aralioides HOM05D005088 ORTHO05D006914 1.0e-34 152.1 150 54.7
Psat5g064920 Pisum sativum HOM05D005088 ORTHO05D006914 5.0e-34 149.8 159 47.8
SHI10481 Sapria himalayana HOM05D005088 ORTHO05D006914 7.3e-33 146.0 182 44.5
TAR629G0436 Trochodendron aralioides HOM05D005088 ORTHO05D006914 9.5e-33 145.6 119 60.5
AUR62029179 Chenopodium quinoa HOM05D005088 ORTHO05D006914 4.7e-32 143.3 118 57.6
PRCOL_00000286 Prasinoderma coloniale HOM05D005088 ORTHO05D006914 8.0e-32 142.5 188 42.6
COL.COLO4_29189 Corchorus olitorius HOM05D005088 ORTHO05D006914 4.4e-30 136.7 119 57.1
PSO782G2229 Papaver somniferum HOM05D005088 ORTHO05D006914 4.4e-30 136.7 174 44.8
Solyc01g112010.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 6.4e-29 132.9 112 59.8
MD09G1021200 Malus domestica HOM05D005088 ORTHO05D006914 4.4e-22 110.2 127 44.1
SGA_v2.0_scaffold18G08253 Striga asiatica HOM05D005088 ORTHO05D006914 1.3e-21 108.6 95 52.6
Sp5g06120 Schrenkiella parvula HOM05D005088 ORTHO05D006914 1.2e-19 102.1 117 48.7
CDE09G0918 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 1.0e-18 99.0 99 48.5
DCAR_001396 Daucus carota HOM05D005088 ORTHO05D006914 1.9e-17 94.7 116 44.8
SpUn0233_0020 Schrenkiella parvula HOM05D005088 ORTHO05D006914 1.2e-16 92.0 82 54.9
Oeu060752.1 Olea europaea HOM05D005088 ORTHO05D006914 4.0e-15 87.0 59 66.1
BcaB02g08365 Brassica carinata HOM05D005088 ORTHO05D006914 1.6e-11 75.1 111 41.4
Sed0009105 Sechium edule HOM05D005088 ORTHO05D006914 3.6e-08 63.9 99 42.4
Manes.17G110201 Manihot esculenta HOM05D005088 ORTHO05D006914 1.4e-07 62.0 61 47.5


User provided reference genes

Program Settings