Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre05.g237700 Chlamydomonas reinhardtii HOM05D005783 ORTHO05D007042 7.3e-32 139.8 65 100.0
MCO03G241 Micromonas commoda HOM05D005783 ORTHO05D007042 5.1e-25 117.1 65 81.5
Mapoly0081s0079 Marchantia polymorpha HOM05D005783 ORTHO05D007042 4.9e-20 100.5 60 73.3
SMO133G0019 Selaginella moellendorffii HOM05D005783 ORTHO05D007042 1.4e-19 99.0 63 68.3
Ciclev10023246m.g Citrus clementina HOM05D005783 ORTHO05D007042 7.1e-19 96.7 63 66.7
Hund02922 Selenicereus undatus HOM05D005783 ORTHO05D007042 7.1e-19 96.7 63 65.1
CSS0031432 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 9.3e-19 96.3 63 68.3
Glyma.03G164500 Glycine max HOM05D005783 ORTHO05D007042 9.3e-19 96.3 63 66.7
Glyma.19G165900 Glycine max HOM05D005783 ORTHO05D007042 1.2e-18 95.9 63 66.7
HPP92_023430 Vanilla planifolia HOM05D005783 ORTHO05D007042 2.1e-18 95.1 63 66.7
Atru.chr12.1356 Acer truncatum HOM05D005783 ORTHO05D007042 2.7e-18 94.7 63 66.7
Atru.chr5.1729 Acer truncatum HOM05D005783 ORTHO05D007042 2.7e-18 94.7 63 66.7
Thecc.06G145600 Theobroma cacao HOM05D005783 ORTHO05D007042 2.7e-18 94.7 63 65.1
Lj1g0019785 Lotus japonicus HOM05D005783 ORTHO05D007042 3.5e-18 94.4 63 66.7
PRCOL_00002782 Prasinoderma coloniale HOM05D005783 ORTHO05D007042 3.5e-18 94.4 62 69.4
Rhsim01G0263700 Rhododendron simsii HOM05D005783 ORTHO05D007042 3.5e-18 94.4 63 66.7
TWI75G0260 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 3.5e-18 94.4 63 65.1
Migut.N02211 Erythranthe guttata HOM05D005783 ORTHO05D007042 4.6e-18 94.0 63 66.7
Gorai.010G167900 Gossypium raimondii HOM05D005783 ORTHO05D007042 6.0e-18 93.6 61 67.2
Os02g0618250 Oryza sativa ssp. japonica HOM05D005783 ORTHO05D007042 6.0e-18 93.6 63 66.7
PSO210G0272 Papaver somniferum HOM05D005783 ORTHO05D007042 6.0e-18 93.6 63 66.7
PSO210G6011 Papaver somniferum HOM05D005783 ORTHO05D007042 6.0e-18 93.6 63 66.7
PSO386G0180 Papaver somniferum HOM05D005783 ORTHO05D007042 6.0e-18 93.6 63 66.7
PSO386G0258 Papaver somniferum HOM05D005783 ORTHO05D007042 6.0e-18 93.6 63 66.7
Duzib235G0343 Durio zibethinus HOM05D005783 ORTHO05D007042 7.9e-18 93.2 63 65.1
Gohir.D06G144100 Gossypium hirsutum HOM05D005783 ORTHO05D007042 7.9e-18 93.2 61 67.2
Lj4g0020381 Lotus japonicus HOM05D005783 ORTHO05D007042 7.9e-18 93.2 63 65.1
CAN.G1366.15 Capsicum annuum HOM05D005783 ORTHO05D007042 1.0e-17 92.8 61 68.9
CAN.G812.22 Capsicum annuum HOM05D005783 ORTHO05D007042 1.0e-17 92.8 61 68.9
MELO3C012871.2 Cucumis melo HOM05D005783 ORTHO05D007042 1.0e-17 92.8 63 65.1
PGSC0003DMG400025503 Solanum tuberosum HOM05D005783 ORTHO05D007042 1.0e-17 92.8 61 68.9
arahy.Tifrunner.gnm1.ann1.3WZ992 Arachis hypogaea HOM05D005783 ORTHO05D007042 1.3e-17 92.4 63 65.1
arahy.Tifrunner.gnm1.ann1.EB1FDX Arachis hypogaea HOM05D005783 ORTHO05D007042 1.3e-17 92.4 63 65.1
arahy.Tifrunner.gnm1.ann1.P2X2DJ Arachis hypogaea HOM05D005783 ORTHO05D007042 1.3e-17 92.4 63 65.1
arahy.Tifrunner.gnm1.ann1.R5MBR2 Arachis hypogaea HOM05D005783 ORTHO05D007042 1.3e-17 92.4 63 65.1
HanXRQChr09g0254261 Helianthus annuus HOM05D005783 ORTHO05D007042 1.3e-17 92.4 61 67.2
Sed0003492 Sechium edule HOM05D005783 ORTHO05D007042 1.8e-17 92.0 63 66.7
THA.LOC104804047 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 1.8e-17 92.0 63 65.1
Duzib160G0066 Durio zibethinus HOM05D005783 ORTHO05D007042 2.3e-17 91.7 61 65.6
Pp3c19_4700 Physcomitrium patens HOM05D005783 ORTHO05D007042 2.3e-17 91.7 61 68.9
Hund09610 Selenicereus undatus HOM05D005783 ORTHO05D007042 2.3e-17 91.7 61 67.2
CsaV3_3G022140 Cucumis sativus L. HOM05D005783 ORTHO05D007042 3.0e-17 91.3 63 63.5
Lsat_1_v5_gn_9_10421 Lactuca sativa HOM05D005783 ORTHO05D007042 3.0e-17 91.3 61 67.2
THA.LOC104814520 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 3.0e-17 91.3 63 65.1
TWI12G1387 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 3.0e-17 91.3 63 63.5
TWI18G0071 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 3.0e-17 91.3 63 63.5
Actinidia09533 Actinidia chinensis HOM05D000063 ORTHO05D002147 3.9e-17 90.9 61 67.2
ECA247G3893 Erigeron canadensis HOM05D005783 ORTHO05D007042 3.9e-17 90.9 61 65.6
TAR633G0770 Trochodendron aralioides HOM05D005783 ORTHO05D007042 3.9e-17 90.9 63 63.5
GSVIVG01033693001 Vitis vinifera HOM05D005783 ORTHO05D007042 3.9e-17 90.9 63 63.5
Lsat_1_v5_gn_5_182900 Lactuca sativa HOM05D005783 ORTHO05D007042 5.1e-17 90.5 60 68.3
Phvul.001G162100 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 5.1e-17 90.5 61 65.6
SEGI_26494 Sequoiadendron giganteum HOM05D005783 ORTHO05D007042 5.1e-17 90.5 60 68.3
Cc08_g00200 Coffea canephora HOM05D005783 ORTHO05D007042 6.7e-17 90.1 63 63.5
Eucgr.A00909 Eucalyptus grandis HOM05D005783 ORTHO05D007042 6.7e-17 90.1 61 65.6
Lalb_Chr13g0299521 Lupinus albus HOM05D005783 ORTHO05D007042 6.7e-17 90.1 61 65.6
Nn3g19695 Nelumbo nucifera HOM05D005783 ORTHO05D007042 6.7e-17 90.1 61 65.6
Nitab4.5_0000326g0120 Nicotiana tabacum HOM05D005783 ORTHO05D007042 6.7e-17 90.1 61 65.6
Nitab4.5_0005593g0040 Nicotiana tabacum HOM05D005783 ORTHO05D007042 6.7e-17 90.1 61 65.6
Nitab4.5_0006107g0020 Nicotiana tabacum HOM05D005783 ORTHO05D007042 6.7e-17 90.1 61 65.6
Nitab4.5_0007062g0060 Nicotiana tabacum HOM05D005783 ORTHO05D007042 6.7e-17 90.1 61 65.6
Potri.002G036500 Populus trichocarpa HOM05D005783 ORTHO05D007042 6.7e-17 90.1 61 65.6
Aqoxy3G02728 Aquilegia oxysepala HOM05D005783 ORTHO05D007042 8.7e-17 89.7 63 63.5
Gohir.A10G043300 Gossypium hirsutum HOM05D005783 ORTHO05D007042 8.7e-17 89.7 61 63.9
Gohir.D10G044500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 8.7e-17 89.7 61 63.9
Gorai.011G047500 Gossypium raimondii HOM05D005783 ORTHO05D007042 8.7e-17 89.7 61 63.9
Lalb_Chr07g0181091 Lupinus albus HOM05D005783 ORTHO05D007042 8.7e-17 89.7 61 65.6
MBI07_g16905_MAGBIO Magnolia biondii HOM05D005783 ORTHO05D007042 8.7e-17 89.7 60 65.0
Manes.13G035400 Manihot esculenta HOM05D005783 ORTHO05D007042 8.7e-17 89.7 61 65.6
Peaxi162Scf00624g00036 Petunia axillaris HOM05D005783 ORTHO05D007042 1.1e-16 89.4 61 67.2
EL10As5g23481 Beta vulgaris HOM05D005783 ORTHO05D007042 1.5e-16 89.0 61 65.6
CSS0015227 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 1.5e-16 89.0 63 63.5
Potri.005G226300 Populus trichocarpa HOM05D005783 ORTHO05D007042 1.5e-16 89.0 61 65.6
Aa31LG8G17440 Aethionema arabicum HOM05D006747 ORTHO05D008384 1.9e-16 88.6 64 62.5
Lalb_Chr12g0200071 Lupinus albus HOM05D005783 ORTHO05D007042 1.9e-16 88.6 61 63.9
MD05G1194800 Malus domestica HOM05D005783 ORTHO05D007042 1.9e-16 88.6 61 67.2
Manes.13G035600 Manihot esculenta HOM05D005783 ORTHO05D007042 1.9e-16 88.6 61 63.9
Prupe.8G221500 Prunus persica HOM05D005783 ORTHO05D007042 1.9e-16 88.6 61 65.6
Sed0004262 Sechium edule HOM05D005783 ORTHO05D007042 1.9e-16 88.6 63 63.5
Solyc09g066500.4 Solanum lycopersicum HOM05D005783 ORTHO05D007042 1.9e-16 88.6 60 66.7
PGSC0003DMG400010293 Solanum tuberosum HOM05D005783 ORTHO05D007042 1.9e-16 88.6 60 66.7
COL.COLO4_31022 Corchorus olitorius HOM05D005783 ORTHO05D007042 2.5e-16 88.2 61 63.9
Medtr7g097110 Medicago truncatula HOM05D005783 ORTHO05D007042 2.5e-16 88.2 63 63.5
Phvul.007G033301 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 4.3e-16 87.4 61 63.9
Phvul.008G022975 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 4.3e-16 87.4 61 63.9
PGR031G0633 Punica granatum HOM05D005783 ORTHO05D007042 4.3e-16 87.4 61 62.3
BcaC06g36737 Brassica carinata HOM05D005783 ORTHO05D007042 5.7e-16 87.0 61 65.6
C07p00540 Brassica napus HOM05D005783 ORTHO05D007042 5.7e-16 87.0 61 65.6
BcaB03g16843 Brassica carinata HOM05D005783 ORTHO05D007042 7.4e-16 86.7 61 65.6
A07p00260 Brassica napus HOM05D005783 ORTHO05D007042 7.4e-16 86.7 61 65.6
BraA07t27818Z Brassica rapa HOM05D005783 ORTHO05D007042 7.4e-16 86.7 61 65.6
ClCG07G001140 Citrullus lanatus HOM05D005783 ORTHO05D007042 7.4e-16 86.7 59 64.4
Medtr8g069770 Medicago truncatula HOM05D005783 ORTHO05D007042 7.4e-16 86.7 61 65.6
Cfa013045 Carpinus fangiana HOM05D005783 ORTHO05D007042 1.3e-15 85.9 60 63.3
MD10G1181400 Malus domestica HOM05D005783 ORTHO05D007042 1.3e-15 85.9 61 63.9
CiPaw.04G187800 Carya illinoinensis HOM05D005783 ORTHO05D007042 1.6e-15 85.5 61 62.3
CDE03G0454 Ceratophyllum demersum HOM05D005783 ORTHO05D007042 1.6e-15 85.5 61 62.3
BcaB08g34911 Brassica carinata HOM05D005783 ORTHO05D007042 2.1e-15 85.1 61 63.9
BcaC04g22786 Brassica carinata HOM05D005783 ORTHO05D007042 2.1e-15 85.1 61 63.9
A09p12910 Brassica napus HOM05D005783 ORTHO05D007042 2.1e-15 85.1 61 63.9
C09p15300 Brassica napus HOM05D005783 ORTHO05D007042 2.1e-15 85.1 61 63.9
BraA09t36936Z Brassica rapa HOM05D005783 ORTHO05D007042 2.1e-15 85.1 61 63.9
BcaC07g41214 Brassica carinata HOM05D005783 ORTHO05D007042 2.8e-15 84.7 61 63.9
A09p58870 Brassica napus HOM05D005783 ORTHO05D007042 2.8e-15 84.7 61 63.9
C08p42200 Brassica napus HOM05D005783 ORTHO05D007042 2.8e-15 84.7 61 63.9
BolC8t51779H Brassica oleracea HOM05D005783 ORTHO05D007042 2.8e-15 84.7 61 63.9
BraA09t41273Z Brassica rapa HOM05D005783 ORTHO05D007042 2.8e-15 84.7 61 63.9
Thhalv10002146m.g Eutrema salsugineum HOM05D005783 ORTHO05D007042 4.8e-15 84.0 61 62.3
FvH4_2g21220 Fragaria vesca HOM05D005783 ORTHO05D007042 4.8e-15 84.0 61 62.3
FAN20G2131 Fragaria x ananassa HOM05D005783 ORTHO05D007042 4.8e-15 84.0 61 62.3
RcHm_v2.0_Chr6g0287721 Rosa chinensis HOM05D005783 ORTHO05D007042 4.8e-15 84.0 61 62.3
Gohir.A06G139500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 8.2e-15 83.2 61 60.7
CANSAT01G1988 Cannabis sativa HOM05D005783 ORTHO05D007042 1.1e-14 82.8 61 62.3
AL3G53490 Arabidopsis lyrata HOM05D005783 ORTHO05D007042 1.4e-14 82.4 61 60.7
AT2G20490 Arabidopsis thaliana HOM05D005783 ORTHO05D007042 1.8e-14 82.0 61 60.7
Carub.0003s3493 Capsella rubella HOM05D005783 ORTHO05D007042 1.8e-14 82.0 61 60.7
CARHR111040 Cardamine hirsuta HOM05D005783 ORTHO05D007042 1.8e-14 82.0 61 60.7
Sp3g33690 Schrenkiella parvula HOM05D005783 ORTHO05D007042 3.1e-14 81.3 61 60.7
SalBow6G4406 Salvia bowleyana HOM05D005783 ORTHO05D007042 6.9e-14 80.1 85 49.4
BolC7t40500H Brassica oleracea HOM05D005783 ORTHO05D007042 7.6e-13 76.6 74 52.7
Haze_21406 Corylus avellana HOM05D005783 ORTHO05D007042 7.6e-13 76.6 73 52.1
unitig_60.g25746 Utricularia gibba HOM05D005783 ORTHO05D007042 2.9e-12 74.7 81 46.9
FAN15G2862 Fragaria x ananassa HOM05D005783 ORTHO05D007042 3.2e-11 71.2 83 45.8
BolC9t54438H Brassica oleracea HOM05D005783 ORTHO05D007042 7.2e-11 70.1 89 43.8
HanXRQChr10g0280801 Helianthus annuus HOM05D005783 ORTHO05D007042 7.2e-11 70.1 45 71.1
Sabra05G0174700 Salix brachista HOM05D005783 ORTHO05D007042 3.5e-10 67.8 45 66.7
FAN27G1156 Fragaria x ananassa HOM05D005783 ORTHO05D007042 7.9e-10 66.6 95 40.0
Phvul.011G076600 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 2.3e-09 65.1 43 67.4
SalBow6G1359 Salvia bowleyana HOM05D005783 ORTHO05D007042 1.9e-08 62.0 76 43.4
MELO3C033129.2 Cucumis melo HOM05D005783 ORTHO05D007042 4.3e-08 60.8 53 56.6
BcaC03g16291 Brassica carinata HOM05D005783 ORTHO05D007042 1.8e-06 55.5 45 60.0
CSS0014186 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 1.8e-06 55.5 49 57.1
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 1.8e-06 55.5 30 76.7
CSS0019928 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 9.0e-06 53.1 36 66.7


User provided reference genes

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