Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 5.7e-153 544.3 286 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 5.7e-36 155.6 230 41.3
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 2.2e-35 153.7 269 37.9
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 3.7e-35 152.9 272 37.5
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 3.7e-35 152.9 231 41.1
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 6.3e-35 152.1 227 42.3
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.4e-34 151.0 233 40.3
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 1.8e-34 150.6 243 40.7
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.8e-34 150.6 236 39.0
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 1.8e-34 150.6 240 39.6
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 2.4e-34 150.2 217 41.5
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 3.1e-34 149.8 246 39.8
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 3.1e-34 149.8 243 37.9
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 4.1e-34 149.4 214 40.2
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 7.0e-34 148.7 221 39.4
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 9.1e-34 148.3 233 41.2
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 9.1e-34 148.3 215 40.0
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 1.6e-33 147.5 217 40.1
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 1.6e-33 147.5 249 41.0
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 1.6e-33 147.5 214 39.3
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.6e-33 146.7 240 37.9
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 2.6e-33 146.7 258 36.8
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 2.6e-33 146.7 217 41.5
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 2.6e-33 146.7 214 39.7
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 2.6e-33 146.7 230 40.9
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 3.5e-33 146.4 217 41.9
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 3.5e-33 146.4 220 38.6
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 4.5e-33 146.0 215 40.0
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 4.5e-33 146.0 214 39.7
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 4.5e-33 146.0 243 37.4
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 5.9e-33 145.6 240 37.9
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 7.7e-33 145.2 217 40.1
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 7.7e-33 145.2 245 37.1
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 7.7e-33 145.2 224 38.8
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 1.0e-32 144.8 247 37.7
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 1.0e-32 144.8 283 35.0
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 1.0e-32 144.8 244 37.7
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 1.3e-32 144.4 219 40.6
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 1.3e-32 144.4 214 40.7
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 1.3e-32 144.4 247 37.7
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 1.3e-32 144.4 235 40.4
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 1.3e-32 144.4 218 39.9
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 1.3e-32 144.4 217 41.0
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 1.7e-32 144.1 241 37.8
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 1.7e-32 144.1 253 38.7
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.7e-32 144.1 239 37.2
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 1.7e-32 144.1 239 37.2
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 1.7e-32 144.1 235 37.4
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 1.7e-32 144.1 226 37.2
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 1.7e-32 144.1 256 37.1
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 2.2e-32 143.7 216 39.8
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 2.2e-32 143.7 214 41.1
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 2.2e-32 143.7 214 39.3
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 2.9e-32 143.3 233 39.9
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 2.9e-32 143.3 240 38.8
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.9e-32 143.3 250 39.2
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 2.9e-32 143.3 214 39.3
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 3.8e-32 142.9 214 40.2
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 3.8e-32 142.9 239 37.2
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 3.8e-32 142.9 245 38.8
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 3.8e-32 142.9 225 39.1
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 5.0e-32 142.5 214 37.9
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 6.5e-32 142.1 214 40.7
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 6.5e-32 142.1 218 39.9
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 1.1e-31 141.4 214 39.7
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 1.1e-31 141.4 217 40.6
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 1.1e-31 141.4 240 38.8
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 1.5e-31 141.0 234 38.9
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 1.5e-31 141.0 233 39.5
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 1.5e-31 141.0 220 38.6
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.5e-31 141.0 214 38.3
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 1.5e-31 141.0 214 39.7
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 2.5e-31 140.2 233 38.2
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 2.5e-31 140.2 244 37.7
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 2.5e-31 140.2 217 39.6
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 3.2e-31 139.8 233 38.2
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 3.2e-31 139.8 215 39.1
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 3.2e-31 139.8 240 35.8
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 5.5e-31 139.0 233 39.1
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 5.5e-31 139.0 236 38.6
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 5.5e-31 139.0 244 35.7
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 7.2e-31 138.7 252 38.1
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 9.4e-31 138.3 236 38.6
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 9.4e-31 138.3 233 38.6
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 9.4e-31 138.3 221 38.5
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 1.6e-30 137.5 214 40.2
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.6e-30 137.5 214 39.3
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 1.6e-30 137.5 242 36.0
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 1.6e-30 137.5 236 38.1
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 2.1e-30 137.1 214 37.9
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 3.6e-30 136.3 217 38.2
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 3.6e-30 136.3 231 38.5
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 3.6e-30 136.3 209 40.2
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 6.1e-30 135.6 214 38.3
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 6.1e-30 135.6 214 38.8
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 6.1e-30 135.6 214 38.8
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 1.4e-29 134.4 240 37.1
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 1.4e-29 134.4 222 37.8
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 1.8e-29 134.0 206 40.3
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 1.8e-29 134.0 213 37.1
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 3.0e-29 133.3 220 36.4
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 4.0e-29 132.9 253 36.0
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 6.7e-29 132.1 243 36.2
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 6.7e-29 132.1 266 34.6
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 6.7e-29 132.1 214 36.0
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 8.8e-29 131.7 214 38.3
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 8.8e-29 131.7 225 34.7
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 4.8e-27 125.9 246 37.0
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 2.4e-26 123.6 218 35.3
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 7.7e-25 118.6 255 32.9
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 1.1e-23 114.8 214 36.9
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 1.9e-23 114.0 214 36.0
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 1.4e-21 107.8 198 36.9
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 6.8e-21 105.5 194 36.1
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 6.8e-21 105.5 194 36.1
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 2.6e-20 103.6 195 35.4
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 5.7e-20 102.4 127 45.7
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 6.3e-19 99.0 133 42.9
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 1.8e-18 97.4 152 40.1
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 7.7e-17 92.0 199 32.7
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.2e-14 84.7 154 35.7
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 3.6e-14 83.2 184 35.3
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 6.8e-13 79.0 177 33.3
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 1.7e-11 74.3 221 30.3
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 5.0e-08 62.8 56 46.4
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 6.6e-08 62.4 56 46.4
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 2.8e-06 57.0 48 47.9


User provided reference genes

Program Settings