Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 0.0e+00 1196.8 605 100.0
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 3.4e-248 861.7 601 71.5
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 1.3e-244 849.7 581 71.9
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 3.9e-244 848.2 559 72.6
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 4.3e-243 844.7 561 72.2
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 4.3e-243 844.7 559 72.5
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 1.6e-242 842.8 585 70.1
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 3.6e-242 841.6 605 67.9
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 4.8e-242 841.3 558 73.7
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.1e-241 838.6 584 70.2
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 5.3e-241 837.8 594 69.5
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 5.3e-241 837.8 603 68.0
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 1.2e-240 836.6 582 69.4
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 2.6e-240 835.5 584 69.7
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 2.6e-240 835.5 557 72.4
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 3.4e-240 835.1 606 68.3
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 4.5e-240 834.7 594 69.4
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 4.5e-240 834.7 582 69.4
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 5.8e-240 834.3 608 68.4
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 7.6e-240 833.9 584 69.7
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 7.6e-240 833.9 571 69.5
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 9.9e-240 833.6 584 69.5
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 1.3e-239 833.2 577 70.0
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.2e-239 832.4 589 69.9
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 2.9e-239 832.0 585 70.3
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 2.9e-239 832.0 579 69.9
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 2.9e-239 832.0 582 69.1
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 6.4e-239 830.9 557 71.6
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 8.4e-239 830.5 582 68.9
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 8.4e-239 830.5 575 69.6
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 8.4e-239 830.5 557 71.8
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 2.4e-238 828.9 608 67.1
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 2.4e-238 828.9 577 70.0
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 3.2e-238 828.6 568 70.4
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 3.2e-238 828.6 559 71.0
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 5.5e-238 827.8 577 69.8
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 9.3e-238 827.0 577 69.8
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 1.2e-237 826.6 564 69.7
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 2.1e-237 825.9 577 68.8
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 2.7e-237 825.5 616 67.4
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.7e-237 825.5 587 68.5
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.7e-237 825.5 587 68.5
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 3.5e-237 825.1 559 71.0
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 3.5e-237 825.1 607 67.2
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 3.5e-237 825.1 588 68.0
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 4.6e-237 824.7 559 69.8
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 4.6e-237 824.7 584 69.3
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 6.0e-237 824.3 580 69.8
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 7.9e-237 823.9 586 68.9
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.0e-236 823.5 565 70.6
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 1.0e-236 823.5 584 68.8
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 1.0e-236 823.5 575 69.7
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 1.8e-236 822.8 577 70.2
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 2.3e-236 822.4 559 70.7
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 3.0e-236 822.0 575 69.6
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 5.1e-236 821.2 577 69.0
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 8.7e-236 820.5 625 66.4
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 8.7e-236 820.5 557 69.8
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 8.7e-236 820.5 584 68.3
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 8.7e-236 820.5 571 69.7
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.1e-235 820.1 571 69.2
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.5e-235 819.7 600 66.8
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 1.5e-235 819.7 588 69.2
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.9e-235 819.3 569 69.2
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 1.9e-235 819.3 569 70.1
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 2.5e-235 818.9 559 71.0
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 3.3e-235 818.5 582 69.1
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 3.3e-235 818.5 580 68.1
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 4.3e-235 818.1 618 66.2
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 4.3e-235 818.1 581 69.0
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 4.3e-235 818.1 593 68.1
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 5.6e-235 817.8 591 68.2
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 5.6e-235 817.8 591 68.2
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 5.6e-235 817.8 590 67.5
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 5.6e-235 817.8 569 69.2
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 5.6e-235 817.8 604 66.9
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 5.6e-235 817.8 579 69.4
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 7.4e-235 817.4 575 68.9
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 9.6e-235 817.0 565 70.3
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 1.3e-234 816.6 598 67.7
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 1.6e-234 816.2 604 67.1
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 2.8e-234 815.5 584 68.7
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 3.7e-234 815.1 590 67.3
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 3.7e-234 815.1 572 68.9
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 3.7e-234 815.1 592 67.6
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 4.8e-234 814.7 600 66.7
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 4.8e-234 814.7 606 66.8
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 4.8e-234 814.7 610 66.6
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 4.8e-234 814.7 610 66.6
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 8.1e-234 813.9 607 66.4
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 8.1e-234 813.9 567 69.7
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 8.1e-234 813.9 594 67.3
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 1.1e-233 813.5 610 66.1
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 1.4e-233 813.1 610 66.6
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 1.4e-233 813.1 604 67.1
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 1.8e-233 812.8 609 66.5
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 2.4e-233 812.4 572 69.6
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 5.3e-233 811.2 572 69.6
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 5.3e-233 811.2 585 67.7
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 9.0e-233 810.4 588 67.3
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 1.2e-232 810.1 653 62.8
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.2e-232 810.1 542 71.2
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 1.5e-232 809.7 572 69.2
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 2.0e-232 809.3 589 67.9
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 1.4e-230 803.1 623 65.0
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 2.5e-230 802.4 601 65.9
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 5.5e-230 801.2 593 66.9
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 6.0e-229 797.7 590 66.9
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 1.0e-228 797.0 649 62.6
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 7.4e-227 790.8 610 64.9
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 9.6e-227 790.4 569 67.7
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 1.6e-226 789.6 569 68.2
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.1e-226 789.3 575 67.0
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 2.2e-223 779.2 552 70.3
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 2.9e-223 778.9 578 66.3
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 8.5e-223 777.3 548 70.8
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.8e-220 769.6 654 60.6
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 3.0e-220 768.8 529 68.8
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.4e-217 760.0 529 70.1
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 4.5e-216 755.0 571 66.0
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.5e-214 749.2 559 66.2
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.6e-211 739.2 576 64.1
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 9.1e-209 730.7 541 66.0
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.5e-206 722.6 593 62.4
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 1.7e-202 709.9 494 71.7
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 7.0e-201 704.5 493 69.8
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.2e-200 703.7 577 61.0
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 7.7e-200 701.0 604 61.6
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.2e-195 687.2 601 58.6
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 4.5e-184 648.7 492 65.7
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 4.2e-182 642.1 446 68.8
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 3.4e-179 632.5 435 70.3
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.8e-177 626.7 492 65.4
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 2.3e-175 619.8 435 68.3
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.5e-174 617.1 428 69.6
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 9.5e-174 614.4 422 70.1
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 9.2e-169 597.8 598 52.8
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 3.4e-155 552.7 403 66.3
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 1.3e-143 514.2 435 60.2
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 7.9e-128 461.8 314 71.0
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 5.5e-121 439.1 386 58.5
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 3.0e-103 380.2 339 58.7
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 1.9e-97 360.9 244 70.9
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 5.0e-82 309.7 277 53.8
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 8.5e-74 282.3 215 61.9
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 1.8e-71 274.6 527 32.6
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 6.8e-63 246.1 148 78.4
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 9.8e-62 242.3 157 73.9
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 5.2e-55 219.9 150 70.7
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 2.7e-51 207.6 125 80.0
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 3.1e-47 194.1 131 71.0
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 7.5e-46 189.5 133 66.2
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 6.0e-43 179.9 116 75.0
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.3e-42 177.9 105 78.1
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 2.3e-42 177.9 108 77.8
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 2.1e-40 171.4 178 50.0
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 5.2e-39 166.8 153 57.5
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 3.4e-38 164.1 113 68.1
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 3.4e-38 164.1 115 68.7
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 2.9e-37 161.0 115 69.6
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 5.1e-34 150.2 104 71.2
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.0e-30 138.3 91 72.5
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 2.9e-29 134.4 192 43.8
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 7.1e-28 129.8 116 59.5
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 7.3e-25 119.8 129 53.5
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 1.4e-23 115.5 62 85.5
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 2.6e-22 111.3 207 35.7
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 5.6e-17 93.6 181 30.9
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 8.1e-16 89.7 57 73.7
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 2.6e-14 84.7 69 59.4
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.3e-10 72.4 46 71.7
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 7.6e-06 56.6 68 48.5


User provided reference genes

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