Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 7.5e-110 400.6 212 100.0
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 2.0e-22 110.2 131 48.1
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 2.0e-22 110.2 131 48.1
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 2.0e-22 110.2 131 48.1
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 2.7e-22 109.8 121 47.1
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 3.5e-22 109.4 114 49.1
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 3.5e-22 109.4 114 50.0
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.3e-21 107.5 119 47.1
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.3e-21 107.5 114 50.0
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 1.7e-21 107.1 122 44.3
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 1.7e-21 107.1 122 45.9
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 1.7e-21 107.1 119 47.1
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 2.2e-21 106.7 122 45.9
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 2.9e-21 106.3 177 38.4
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 3.8e-21 105.9 119 46.2
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 3.8e-21 105.9 119 47.1
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 5.0e-21 105.5 120 46.7
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 5.0e-21 105.5 119 46.2
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.0e-21 105.5 121 45.5
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 5.0e-21 105.5 119 47.1
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 6.5e-21 105.1 119 46.2
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 6.5e-21 105.1 119 47.1
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 8.5e-21 104.8 129 45.0
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 8.5e-21 104.8 120 45.8
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 8.5e-21 104.8 114 47.4
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 1.1e-20 104.4 120 46.7
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 1.5e-20 104.0 119 44.5
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 1.5e-20 104.0 119 44.5
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 1.5e-20 104.0 129 43.4
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 1.5e-20 104.0 122 45.9
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 1.9e-20 103.6 120 45.8
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 1.9e-20 103.6 120 45.8
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 1.9e-20 103.6 119 46.2
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 1.9e-20 103.6 120 45.0
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 2.5e-20 103.2 119 45.4
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 2.5e-20 103.2 119 45.4
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 2.5e-20 103.2 112 47.3
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 2.5e-20 103.2 114 46.5
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 2.5e-20 103.2 122 45.1
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 3.2e-20 102.8 114 45.6
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 3.2e-20 102.8 120 44.2
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 3.2e-20 102.8 119 44.5
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 4.2e-20 102.4 120 44.2
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 5.5e-20 102.1 114 45.6
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 7.2e-20 101.7 114 46.5
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 7.2e-20 101.7 120 45.0
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 9.4e-20 101.3 108 45.4
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 9.4e-20 101.3 121 44.6
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 9.4e-20 101.3 119 44.5
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 1.6e-19 100.5 120 45.0
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 1.6e-19 100.5 120 45.8
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 2.1e-19 100.1 120 45.0
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 2.1e-19 100.1 120 45.0
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 2.1e-19 100.1 121 44.6
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 2.1e-19 100.1 120 43.3
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 2.1e-19 100.1 113 46.9
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 2.1e-19 100.1 119 43.7
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 2.1e-19 100.1 119 43.7
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 3.6e-19 99.4 120 45.0
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 3.6e-19 99.4 120 45.0
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 3.6e-19 99.4 120 45.0
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 3.6e-19 99.4 113 45.1
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 3.6e-19 99.4 114 44.7
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 4.7e-19 99.0 113 46.0
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 4.7e-19 99.0 113 45.1
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 4.7e-19 99.0 116 44.8
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 6.1e-19 98.6 120 43.3
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 6.1e-19 98.6 120 43.3
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 6.1e-19 98.6 120 43.3
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 6.1e-19 98.6 120 43.3
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 6.1e-19 98.6 120 44.2
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 6.1e-19 98.6 119 42.0
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 8.0e-19 98.2 122 44.3
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 8.0e-19 98.2 121 43.8
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 8.0e-19 98.2 119 44.5
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 1.0e-18 97.8 122 45.1
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 1.0e-18 97.8 122 45.1
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.0e-18 97.8 120 43.3
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 1.0e-18 97.8 113 44.2
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 1.0e-18 97.8 127 44.9
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 1.4e-18 97.4 114 43.0
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 1.4e-18 97.4 119 44.5
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 1.8e-18 97.1 117 42.7
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 1.8e-18 97.1 119 42.0
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 2.3e-18 96.7 114 44.7
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 2.3e-18 96.7 122 44.3
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 2.3e-18 96.7 122 44.3
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 2.3e-18 96.7 120 45.0
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 2.3e-18 96.7 189 33.9
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 3.0e-18 96.3 120 42.5
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 4.0e-18 95.9 120 43.3
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 4.0e-18 95.9 168 36.3
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 5.2e-18 95.5 120 44.2
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 5.2e-18 95.5 120 42.5
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 5.2e-18 95.5 108 45.4
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 5.2e-18 95.5 120 43.3
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 6.8e-18 95.1 122 43.4
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 1.5e-17 94.0 125 42.4
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 1.5e-17 94.0 114 44.7
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 1.5e-17 94.0 189 32.8
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 2.0e-17 93.6 104 45.2
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 4.4e-17 92.4 114 44.7
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 5.7e-17 92.0 114 44.7
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 7.5e-17 91.7 181 34.8
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 9.8e-17 91.3 114 43.9
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 4.9e-16 89.0 122 41.0
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 1.8e-15 87.0 106 43.4
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 4.1e-15 85.9 159 35.2
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 1.6e-14 84.0 147 37.4
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 2.9e-13 79.7 128 39.8
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 1.1e-12 77.8 123 33.3
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 2.1e-11 73.6 84 40.5
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 1.8e-10 70.5 174 31.6
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 2.6e-09 66.6 83 44.6
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 3.4e-09 66.2 101 36.6
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 2.2e-08 63.5 83 42.2
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 4.1e-07 59.3 86 37.2
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 2.0e-06 57.0 114 30.7
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.7e-06 56.6 124 35.5
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.7e-06 56.6 124 35.5


User provided reference genes

Program Settings