Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g160100 Chlamydomonas reinhardtii HOM05D005173 ORTHO05D006214 6.2e-174 614.0 304 100.0
Mapoly0002s0260 Marchantia polymorpha HOM05D005173 ORTHO05D006214 1.0e-59 234.6 295 43.1
HPP92_006149 Vanilla planifolia HOM05D005173 ORTHO05D006214 8.7e-59 231.5 300 41.0
MSTRG.19482 Avicennia marina HOM05D005173 ORTHO05D006214 4.8e-57 225.7 306 41.2
Pp3c15_14310 Physcomitrium patens HOM05D005173 ORTHO05D006214 1.8e-56 223.8 300 40.7
Ciclev10008959m.g Citrus clementina HOM05D005173 ORTHO05D006214 3.1e-56 223.0 300 40.7
SMO203G0271 Selaginella moellendorffii HOM05D005173 ORTHO05D006214 3.1e-56 223.0 298 42.3
Cc00_g19370 Coffea canephora HOM05D005173 ORTHO05D006214 5.3e-56 222.2 299 40.5
arahy.Tifrunner.gnm1.ann1.6AS4TW Arachis hypogaea HOM05D005173 ORTHO05D006214 9.0e-56 221.5 298 40.3
Os07g0608300 Oryza sativa ssp. japonica HOM05D005173 ORTHO05D006214 1.2e-55 221.1 302 38.4
Ca_21308_v3 Cicer arietinum L. HOM05D005173 ORTHO05D006214 1.5e-55 220.7 302 39.4
Eucgr.C00843 Eucalyptus grandis HOM05D005173 ORTHO05D006214 1.5e-55 220.7 302 40.4
Psat4g016960 Pisum sativum HOM05D005173 ORTHO05D006214 1.5e-55 220.7 295 40.0
Atru.chr7.1658 Acer truncatum HOM05D005173 ORTHO05D006214 2.0e-55 220.3 302 39.7
Migut.L01541 Erythranthe guttata HOM05D005173 ORTHO05D006214 2.0e-55 220.3 296 41.6
MSTRG.10526 Avicennia marina HOM05D005173 ORTHO05D006214 2.6e-55 219.9 302 41.1
PGR142G0948 Punica granatum HOM05D005173 ORTHO05D006214 2.6e-55 219.9 302 40.4
arahy.Tifrunner.gnm1.ann1.9Y0BJI Arachis hypogaea HOM05D005173 ORTHO05D006214 3.4e-55 219.5 298 39.9
Cpa.g.sc28.94 Carica papaya HOM05D005173 ORTHO05D006214 3.4e-55 219.5 302 40.4
CDE04G2820 Ceratophyllum demersum HOM05D005173 ORTHO05D006214 5.8e-55 218.8 304 40.5
TWI32G0591 Tripterygium wilfordii HOM05D005173 ORTHO05D006214 5.8e-55 218.8 302 40.1
TWI63G0548 Tripterygium wilfordii HOM05D005173 ORTHO05D006214 5.8e-55 218.8 312 39.4
unitig_22.g5750 Utricularia gibba HOM05D005173 ORTHO05D006214 5.8e-55 218.8 297 41.4
MSTRG.26457 Avicennia marina HOM05D005173 ORTHO05D006214 9.9e-55 218.0 302 39.4
CiPaw.03G210500 Carya illinoinensis HOM05D005173 ORTHO05D006214 9.9e-55 218.0 301 40.9
Potri.018G064800 Populus trichocarpa HOM05D005173 ORTHO05D006214 1.3e-54 217.6 297 40.1
Lj4g0027115 Lotus japonicus HOM05D005173 ORTHO05D006214 1.7e-54 217.2 302 39.1
QL02p061251 Quercus lobata HOM05D005173 ORTHO05D006214 1.7e-54 217.2 301 38.9
Carub.0006s1885 Capsella rubella HOM05D005173 ORTHO05D006214 2.2e-54 216.9 299 39.8
Manes.03G037700 Manihot esculenta HOM05D005173 ORTHO05D006214 2.9e-54 216.5 300 39.3
AT5G20520 Arabidopsis thaliana HOM05D005173 ORTHO05D006214 3.8e-54 216.1 297 40.1
Dinv25585 Davidia involucrata HOM05D005173 ORTHO05D006214 3.8e-54 216.1 302 40.4
Aqoxy7G01101 Aquilegia oxysepala HOM05D005173 ORTHO05D006214 4.9e-54 215.7 302 39.4
A02p06290 Brassica napus HOM05D005173 ORTHO05D006214 4.9e-54 215.7 300 40.0
BraA02t05577Z Brassica rapa HOM05D005173 ORTHO05D006214 4.9e-54 215.7 300 40.0
CARHR192290 Cardamine hirsuta HOM05D005173 ORTHO05D006214 6.4e-54 215.3 297 39.4
Glyma.17G051500 Glycine max HOM05D005173 ORTHO05D006214 6.4e-54 215.3 302 39.4
PSO421G0551 Papaver somniferum HOM05D005173 ORTHO05D006214 6.4e-54 215.3 296 39.9
Potri.006G145200 Populus trichocarpa HOM05D005173 ORTHO05D006214 6.4e-54 215.3 299 40.1
AL6G32050 Arabidopsis lyrata HOM05D005173 ORTHO05D006214 8.4e-54 214.9 297 39.7
THA.LOC104799624 Tarenaya hassleriana HOM05D005173 ORTHO05D006214 8.4e-54 214.9 303 39.6
BolC2t07046H Brassica oleracea HOM05D005173 ORTHO05D006214 1.1e-53 214.5 300 40.0
Medtr4g125660 Medicago truncatula HOM05D005173 ORTHO05D006214 1.1e-53 214.5 298 38.6
PSO063G3756 Papaver somniferum HOM05D005173 ORTHO05D006214 1.1e-53 214.5 296 39.9
Lsat_1_v5_gn_7_34821 Lactuca sativa HOM05D005173 ORTHO05D006214 1.4e-53 214.2 298 38.9
Nn8g38732 Nelumbo nucifera HOM05D005173 ORTHO05D006214 1.4e-53 214.2 296 40.5
Phvul.003G133200 Phaseolus vulgaris HOM05D005173 ORTHO05D006214 1.4e-53 214.2 299 39.5
Glyma.13G107800 Glycine max HOM05D005173 ORTHO05D006214 1.9e-53 213.8 302 39.1
Hma1.2p1_0797F.1_g219350 Hydrangea macrophylla HOM05D005173 ORTHO05D006214 1.9e-53 213.8 302 39.4
Manes.16G098000 Manihot esculenta HOM05D005173 ORTHO05D006214 1.9e-53 213.8 302 38.4
PGSC0003DMG400020952 Solanum tuberosum HOM05D005173 ORTHO05D006214 1.9e-53 213.8 298 39.3
VMungo1215G2902 Vigna mungo HOM05D005173 ORTHO05D006214 1.9e-53 213.8 299 39.5
Zm00001eb108940 Zea mays HOM05D005173 ORTHO05D006214 1.9e-53 213.8 299 38.8
Duzib150G1290 Durio zibethinus HOM05D005173 ORTHO05D006214 2.4e-53 213.4 299 39.8
Dinv42364 Davidia involucrata HOM05D005173 ORTHO05D006214 3.2e-53 213.0 302 40.1
FAN19G2713 Fragaria x ananassa HOM05D005173 ORTHO05D006214 3.2e-53 213.0 303 39.3
Prupe.7G203600 Prunus persica HOM05D005173 ORTHO05D006214 3.2e-53 213.0 302 39.1
Sp6g23940 Schrenkiella parvula HOM05D005173 ORTHO05D006214 3.2e-53 213.0 299 39.8
CANSAT56G2861 Cannabis sativa HOM05D005173 ORTHO05D006214 4.2e-53 212.6 302 38.7
Lalb_Chr07g0181031 Lupinus albus HOM05D005173 ORTHO05D006214 4.2e-53 212.6 302 39.7
Sed0013811 Sechium edule HOM05D005173 ORTHO05D006214 4.2e-53 212.6 293 40.6
Solyc07g041200.3 Solanum lycopersicum HOM05D005173 ORTHO05D006214 4.2e-53 212.6 302 39.4
Sopen07g020470 Solanum pennellii HOM05D005173 ORTHO05D006214 4.2e-53 212.6 302 39.4
Actinidia39689 Actinidia chinensis HOM05D005173 ORTHO05D006214 5.4e-53 212.2 297 39.7
Thecc.09G081500 Theobroma cacao HOM05D005173 ORTHO05D006214 5.4e-53 212.2 302 39.4
GSVIVG01015121001 Vitis vinifera HOM05D005173 ORTHO05D006214 5.4e-53 212.2 300 40.0
Lsat_1_v5_gn_5_142000 Lactuca sativa HOM05D005173 ORTHO05D006214 7.1e-53 211.8 294 38.1
Sed0012764 Sechium edule HOM05D005173 ORTHO05D006214 7.1e-53 211.8 295 40.0
EL10Ac8g19142 Beta vulgaris HOM05D005173 ORTHO05D006214 9.3e-53 211.5 299 39.1
BcaB05g22843 Brassica carinata HOM05D005173 ORTHO05D006214 9.3e-53 211.5 300 39.7
Thhalv10014184m.g Eutrema salsugineum HOM05D005173 ORTHO05D006214 9.3e-53 211.5 299 40.1
FvH4_1g08150 Fragaria vesca HOM05D005173 ORTHO05D006214 9.3e-53 211.5 303 38.9
Gohir.D13G197600 Gossypium hirsutum HOM05D005173 ORTHO05D006214 9.3e-53 211.5 293 39.6
Gorai.013G226300 Gossypium raimondii HOM05D005173 ORTHO05D006214 9.3e-53 211.5 298 39.3
HanXRQChr09g0237971 Helianthus annuus HOM05D005173 ORTHO05D006214 1.2e-52 211.1 293 39.6
Sc18g0002360 Simmondsia chinensis HOM05D005173 ORTHO05D006214 1.6e-52 210.7 296 39.5
ECA234G3859 Erigeron canadensis HOM05D005173 ORTHO05D006214 2.1e-52 210.3 293 37.5
FAN23G0270 Fragaria x ananassa HOM05D005173 ORTHO05D006214 2.1e-52 210.3 303 38.9
A10p19490 Brassica napus HOM05D005173 ORTHO05D006214 2.7e-52 209.9 295 39.0
BolC9t58435H Brassica oleracea HOM05D005173 ORTHO05D006214 2.7e-52 209.9 299 38.8
BraA10t44025Z Brassica rapa HOM05D005173 ORTHO05D006214 2.7e-52 209.9 295 39.0
CAN.G88.5 Capsicum annuum HOM05D005173 ORTHO05D006214 2.7e-52 209.9 302 39.1
MELO3C015504.2 Cucumis melo HOM05D005173 ORTHO05D006214 2.7e-52 209.9 296 39.2
Lalb_Chr12g0200011 Lupinus albus HOM05D005173 ORTHO05D006214 2.7e-52 209.9 299 38.5
MD15G1213300 Malus domestica HOM05D005173 ORTHO05D006214 2.7e-52 209.9 300 39.0
SGA_v2.0_scaffold21G09462 Striga asiatica HOM05D005173 ORTHO05D006214 2.7e-52 209.9 348 36.2
ClCG03G015280 Citrullus lanatus HOM05D005173 ORTHO05D006214 4.6e-52 209.1 296 39.2
CsaV3_1G040770 Cucumis sativus L. HOM05D005173 ORTHO05D006214 4.6e-52 209.1 296 39.2
DCAR_024724 Daucus carota HOM05D005173 ORTHO05D006214 4.6e-52 209.1 295 39.0
FAN28G2824 Fragaria x ananassa HOM05D005173 ORTHO05D006214 4.6e-52 209.1 303 38.9
TAR636G1303 Trochodendron aralioides HOM05D005173 ORTHO05D006214 4.6e-52 209.1 302 39.4
HanXRQChr01g0007561 Helianthus annuus HOM05D005173 ORTHO05D006214 6.0e-52 208.8 296 38.9
BcaB08g36505 Brassica carinata HOM05D005173 ORTHO05D006214 7.9e-52 208.4 289 39.4
CSS0048515 Camellia sinensis var. sinensis HOM05D005173 ORTHO05D006214 7.9e-52 208.4 302 38.4
BcaC04g19437 Brassica carinata HOM05D005173 ORTHO05D006214 1.0e-51 208.0 299 38.8
C09p55690 Brassica napus HOM05D005173 ORTHO05D006214 1.0e-51 208.0 299 38.8
Gohir.A13G192200 Gossypium hirsutum HOM05D005173 ORTHO05D006214 1.0e-51 208.0 298 39.3
MD02G1086100 Malus domestica HOM05D005173 ORTHO05D006214 1.0e-51 208.0 296 38.2
SHI33752 Sapria himalayana HOM05D005173 ORTHO05D006214 1.8e-51 207.2 281 40.2
FAN26G2726 Fragaria x ananassa HOM05D005173 ORTHO05D006214 2.3e-51 206.8 303 38.3
FAN26G1854 Fragaria x ananassa HOM05D005173 ORTHO05D006214 3.0e-51 206.5 303 38.3
RcHm_v2.0_Chr2g0094221 Rosa chinensis HOM05D005173 ORTHO05D006214 3.0e-51 206.5 302 38.1
COL.COLO4_18139 Corchorus olitorius HOM05D005173 ORTHO05D006214 3.9e-51 206.1 322 37.3
Haze_25966 Corylus avellana HOM05D005173 ORTHO05D006214 1.5e-50 204.1 355 34.4
CBR_g3819 Chara braunii HOM05D005173 ORTHO05D006214 4.3e-50 202.6 294 37.4
Oeu054818.3 Olea europaea HOM05D005173 ORTHO05D006214 1.3e-49 201.1 346 36.1
TAR624G0255 Trochodendron aralioides HOM05D005173 ORTHO05D006214 1.6e-49 200.7 300 37.7
Ah.14g085040 Amaranthus hybridus HOM05D005173 ORTHO05D006214 1.8e-48 197.2 296 37.8
AUR62025172 Chenopodium quinoa HOM05D005173 ORTHO05D006214 2.4e-48 196.8 296 38.5
AUR62029004 Chenopodium quinoa HOM05D005173 ORTHO05D006214 6.9e-48 195.3 296 37.8
Nitab4.5_0013150g0020 Nicotiana tabacum HOM05D005173 ORTHO05D006214 2.0e-47 193.7 296 37.8
DCAR_028284 Daucus carota HOM05D005173 ORTHO05D006214 4.5e-47 192.6 309 35.3
Lj7C682G9 Lonicera japonica HOM05D005173 ORTHO05D006214 7.6e-47 191.8 296 37.2
SalBow1G6961 Salvia bowleyana HOM05D005173 ORTHO05D006214 1.3e-46 191.0 331 36.3
Duzib168G0179 Durio zibethinus HOM05D005173 ORTHO05D006214 1.7e-46 190.7 296 37.2
Nitab4.5_0001488g0160 Nicotiana tabacum HOM05D005173 ORTHO05D006214 2.2e-46 190.3 296 37.5
Sabra06G0114800 Salix brachista HOM05D005173 ORTHO05D006214 3.8e-46 189.5 304 36.8
Peaxi162Scf00246g00045 Petunia axillaris HOM05D005173 ORTHO05D006214 1.1e-45 188.0 287 37.6
ATR0598G148 Amborella trichopoda HOM05D005173 ORTHO05D006214 1.9e-45 187.2 229 44.5
Sabra18G0057400 Salix brachista HOM05D005173 ORTHO05D006214 6.0e-44 182.2 368 33.4
Aa31LG1G14140 Aethionema arabicum HOM05D005173 ORTHO05D006214 6.7e-43 178.7 299 35.1
vmacro17173 Vaccinium macrocarpon HOM05D005173 ORTHO05D006214 2.6e-39 166.8 386 30.1
BcaB05g22835 Brassica carinata HOM05D005173 ORTHO05D006214 3.4e-39 166.4 222 40.5
BcaC03g13770 Brassica carinata HOM05D005173 ORTHO05D006214 1.4e-37 161.0 274 36.5
DCAR_031940 Daucus carota HOM05D005173 ORTHO05D006214 4.2e-37 159.5 290 33.1
HPP92_009230 Vanilla planifolia HOM05D005173 ORTHO05D006214 1.6e-36 157.5 174 47.1
Actinidia25222 Actinidia chinensis HOM05D005173 ORTHO05D006214 2.3e-35 153.7 197 40.1
Rhsim05G0012900 Rhododendron simsii HOM05D005173 ORTHO05D006214 8.7e-35 151.8 308 32.8
TPR.G9429 Trifolium pratense HOM05D005173 ORTHO05D006214 1.5e-34 151.0 174 44.3
QL02p061362 Quercus lobata HOM05D005173 ORTHO05D006214 2.1e-28 130.6 186 37.1
Cfa026742 Carpinus fangiana HOM05D005173 ORTHO05D006214 6.1e-28 129.0 270 31.1
PRCOL_00002900 Prasinoderma coloniale HOM05D005173 ORTHO05D006214 4.1e-24 116.3 297 29.6
Rhsim03G0230600 Rhododendron simsii HOM05D005173 ORTHO05D006214 8.5e-22 108.6 207 31.9
BNapus_Darmor_BZH_scaffold_38p01550 Brassica napus HOM05D005173 ORTHO05D006214 5.5e-21 105.9 102 48.0
Cfa023090 Carpinus fangiana HOM05D005173 ORTHO05D126580 7.0e-16 89.0 256 28.5
MCO15G111 Micromonas commoda HOM05D005173 ORTHO05D006214 2.5e-13 80.5 292 26.4
HPP92_009231 Vanilla planifolia HOM05D005173 ORTHO05D006214 4.7e-12 76.3 123 35.0
TPR.G23232 Trifolium pratense HOM05D005173 ORTHO05D006214 1.4e-11 74.7 125 32.8
RcHm_v2.0_Chr1g0350901 Rosa chinensis HOM05D000464 ORTHO05D000408 7.0e-08 62.4 162 30.9
Hma1.2p1_0440F.1_g153610 Hydrangea macrophylla HOM05D005173 ORTHO05D006214 1.2e-07 61.6 61 44.3
SGA_v2.0_scaffold23G10070 Striga asiatica HOM05D005173 ORTHO05D006214 2.7e-07 60.5 76 38.2
MCO11G265 Micromonas commoda HOM05D000464 ORTHO05D000408 1.0e-06 58.5 206 25.7
Haze_27227 Corylus avellana HOM05D000464 ORTHO05D000408 1.3e-06 58.2 174 26.4
Lalb_Chr17g0341571 Lupinus albus HOM05D000464 ORTHO05D000408 2.2e-06 57.4 162 27.2
CAN.G520.13 Capsicum annuum HOM05D000464 ORTHO05D000408 6.5e-06 55.8 212 25.0


User provided reference genes

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