Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 8.1e-163 577.0 291 100.0
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 1.2e-62 244.2 282 51.1
Cre12.g534850 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 2.2e-35 153.7 145 58.6
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 1.5e-23 114.4 236 39.4
Cre12.g534945 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 6.9e-21 105.5 101 60.4
Cfa025086 Carpinus fangiana HOM05D015906 ORTHO05D028597 1.6e-17 94.4 234 32.1
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 7.9e-17 92.0 263 30.0
CBR_g41172 Chara braunii HOM05D015906 ORTHO05D028597 1.1e-13 81.6 283 30.4
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 1.8e-13 80.9 194 35.6
CBR_g41171 Chara braunii HOM05D015906 ORTHO05D028597 1.5e-12 77.8 270 29.6
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 2.9e-11 73.6 196 30.6
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 4.9e-11 72.8 223 29.6
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 6.5e-11 72.4 193 27.5
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 8.4e-11 72.0 198 30.3
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 1.4e-10 71.2 199 28.6
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 2.5e-10 70.5 196 29.6
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 2.5e-10 70.5 244 27.9
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 3.2e-10 70.1 196 29.6
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 3.2e-10 70.1 245 27.8
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 3.2e-10 70.1 245 27.8
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 3.2e-10 70.1 193 30.1
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 3.2e-10 70.1 208 27.9
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 4.2e-10 69.7 245 27.8
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 4.2e-10 69.7 245 27.8
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 4.2e-10 69.7 245 27.8
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 4.2e-10 69.7 193 29.0
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 4.2e-10 69.7 227 28.6
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 9.3e-10 68.6 193 29.5
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 1.2e-09 68.2 186 30.1
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 1.2e-09 68.2 193 29.5
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.2e-09 68.2 240 27.5
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.6e-09 67.8 186 26.9
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 1.6e-09 67.8 205 29.3
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.1e-09 67.4 208 27.9
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 2.7e-09 67.0 189 30.2
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 2.7e-09 67.0 190 30.5
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 2.7e-09 67.0 256 27.0
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 2.7e-09 67.0 186 30.1
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 2.7e-09 67.0 208 27.9
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 3.5e-09 66.6 208 27.9
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 3.5e-09 66.6 199 30.2
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 4.6e-09 66.2 206 28.6
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 4.6e-09 66.2 186 30.1
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 4.6e-09 66.2 201 28.9
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 6.0e-09 65.9 186 30.1
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 6.0e-09 65.9 225 27.6
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 6.0e-09 65.9 186 30.1
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 6.0e-09 65.9 225 27.1
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 7.9e-09 65.5 189 29.6
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 7.9e-09 65.5 193 28.0
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 1.0e-08 65.1 224 27.2
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.0e-08 65.1 229 27.5
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 1.0e-08 65.1 201 29.4
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 1.0e-08 65.1 194 30.4
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 1.3e-08 64.7 193 28.5
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 1.3e-08 64.7 225 27.1
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 1.8e-08 64.3 205 28.3
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.8e-08 64.3 186 29.6
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.8e-08 64.3 186 29.6
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.8e-08 64.3 186 29.6
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 1.8e-08 64.3 225 26.7
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 2.3e-08 63.9 193 28.0
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.3e-08 63.9 186 25.8
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 2.3e-08 63.9 191 28.3
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 2.3e-08 63.9 196 29.1
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 2.3e-08 63.9 196 28.6
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 3.0e-08 63.5 213 27.7
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.0e-08 63.5 229 27.1
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 3.0e-08 63.5 194 30.4
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 3.9e-08 63.2 201 27.9
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 3.9e-08 63.2 189 28.6
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 5.1e-08 62.8 198 28.8
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 6.7e-08 62.4 194 29.9
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 6.7e-08 62.4 189 29.1
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 6.7e-08 62.4 196 28.6
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 6.7e-08 62.4 265 25.7
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 8.7e-08 62.0 193 28.5
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 8.7e-08 62.0 186 28.0
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 8.7e-08 62.0 196 29.1
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 8.7e-08 62.0 198 27.8
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 1.1e-07 61.6 200 28.5
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.5e-07 61.2 191 27.2
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 1.5e-07 61.2 186 28.5
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 1.5e-07 61.2 210 27.1
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 1.5e-07 61.2 193 28.5
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.5e-07 61.2 220 26.8
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.5e-07 61.2 211 27.0
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 1.9e-07 60.8 214 26.6
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 1.9e-07 60.8 213 26.8
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.5e-07 60.5 193 28.0
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 2.5e-07 60.5 183 29.0
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 2.5e-07 60.5 186 28.5
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 2.5e-07 60.5 213 26.8
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 3.3e-07 60.1 208 26.9
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 3.3e-07 60.1 203 27.6
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 3.3e-07 60.1 200 29.5
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 3.3e-07 60.1 193 28.0
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.3e-07 59.7 257 25.7
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.3e-07 59.7 192 27.6
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 4.3e-07 59.7 193 27.5
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 5.7e-07 59.3 192 27.6
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 7.4e-07 58.9 189 27.0
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 7.4e-07 58.9 186 29.0
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 7.4e-07 58.9 192 27.6
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 9.6e-07 58.5 183 28.4
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 1.3e-06 58.2 185 27.6
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 1.3e-06 58.2 166 27.7
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 1.3e-06 58.2 201 27.9
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.6e-06 57.8 185 27.6
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 2.1e-06 57.4 131 27.5
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 2.1e-06 57.4 183 27.9
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 2.1e-06 57.4 191 26.7
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 2.8e-06 57.0 211 26.5
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 6.2e-06 55.8 193 26.4
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 6.2e-06 55.8 185 27.6
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 8.2e-06 55.5 186 26.3
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 8.2e-06 55.5 242 27.3


User provided reference genes

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