Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 2.2e-269 931.8 505 100.0
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 1.6e-97 360.9 399 53.9
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 2.1e-97 360.5 382 53.4
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.9e-96 356.3 458 47.6
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.5e-95 354.4 395 52.7
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 1.3e-91 341.3 412 48.3
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.2e-90 336.7 382 50.0
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.3e-88 331.3 393 48.3
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 2.3e-88 330.5 381 51.2
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.1e-87 328.2 377 50.1
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.8e-86 323.6 383 50.9
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 6.2e-86 322.4 377 48.8
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 1.8e-85 320.9 377 49.1
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 1.8e-85 320.9 383 48.6
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 4.0e-85 319.7 377 48.8
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 5.3e-85 319.3 383 47.5
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 9.0e-85 318.5 383 47.5
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 1.2e-84 318.2 388 47.9
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.5e-84 317.8 375 49.1
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 2.6e-84 317.0 383 48.3
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 2.6e-84 317.0 375 48.8
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 3.4e-84 316.6 375 49.3
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 4.5e-84 316.2 383 48.0
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 4.5e-84 316.2 377 48.0
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 9.9e-84 315.1 383 47.8
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 1.3e-83 314.7 377 48.3
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 1.3e-83 314.7 377 48.3
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 1.3e-83 314.7 377 47.7
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 1.3e-83 314.7 403 47.1
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 2.9e-83 313.5 383 46.5
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 2.9e-83 313.5 383 46.5
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 2.9e-83 313.5 377 47.5
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 3.8e-83 313.2 383 46.5
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.8e-83 313.2 383 46.7
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 4.9e-83 312.8 375 47.7
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 4.9e-83 312.8 375 49.1
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 4.9e-83 312.8 383 48.0
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 6.4e-83 312.4 375 47.2
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 6.4e-83 312.4 377 47.5
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 8.4e-83 312.0 383 48.0
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 8.4e-83 312.0 390 46.9
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 8.4e-83 312.0 383 46.5
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 8.4e-83 312.0 383 46.5
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 8.4e-83 312.0 383 46.5
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 8.4e-83 312.0 383 46.5
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 8.4e-83 312.0 383 46.7
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 8.4e-83 312.0 375 47.7
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 8.4e-83 312.0 383 47.0
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 8.4e-83 312.0 383 48.0
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 1.1e-82 311.6 383 48.8
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.1e-82 311.6 383 47.3
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 1.1e-82 311.6 383 48.0
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 1.4e-82 311.2 387 48.1
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 1.4e-82 311.2 375 48.0
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 2.4e-82 310.5 383 46.2
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 2.4e-82 310.5 377 48.3
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 3.2e-82 310.1 375 47.5
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 3.2e-82 310.1 375 48.8
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 4.2e-82 309.7 383 46.0
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 4.2e-82 309.7 383 47.5
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 4.2e-82 309.7 375 48.3
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 5.4e-82 309.3 383 46.0
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 7.1e-82 308.9 377 47.2
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 9.3e-82 308.5 383 46.5
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 9.3e-82 308.5 375 47.5
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 9.3e-82 308.5 375 47.7
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 1.2e-81 308.1 377 48.3
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.6e-81 307.8 396 45.5
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 2.1e-81 307.4 381 45.7
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.1e-81 307.4 377 47.7
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 2.1e-81 307.4 375 46.7
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 2.7e-81 307.0 383 45.4
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.7e-81 307.0 380 47.9
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.7e-81 307.0 380 47.9
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 2.7e-81 307.0 377 46.4
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 2.7e-81 307.0 375 46.7
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 2.7e-81 307.0 383 46.2
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 2.7e-81 307.0 374 47.6
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 3.5e-81 306.6 383 45.7
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.5e-81 306.6 375 46.7
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 3.5e-81 306.6 375 47.7
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 6.0e-81 305.8 375 46.9
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 7.9e-81 305.4 383 46.0
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 7.9e-81 305.4 375 46.4
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.0e-80 305.1 383 45.4
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 1.0e-80 305.1 383 45.4
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 1.0e-80 305.1 390 45.9
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 3.0e-80 303.5 375 46.7
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 3.9e-80 303.1 383 45.7
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 3.9e-80 303.1 375 46.1
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 6.7e-80 302.4 383 45.2
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 8.7e-80 302.0 383 46.2
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 8.7e-80 302.0 383 46.2
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 8.7e-80 302.0 375 46.1
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 8.7e-80 302.0 383 44.9
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.1e-79 301.6 383 46.2
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.1e-79 301.6 391 44.8
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.5e-79 301.2 375 46.4
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 1.9e-79 300.8 388 46.4
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 4.3e-79 299.7 387 47.3
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 9.6e-79 298.5 383 45.2
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 9.6e-79 298.5 383 45.2
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 1.3e-78 298.1 384 45.3
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 2.1e-78 297.4 367 45.5
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 1.1e-77 295.0 392 46.2
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 9.9e-76 288.5 359 46.0
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 2.2e-75 287.3 353 46.7
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.9e-74 284.3 383 43.9
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.9e-74 284.3 383 43.9
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.1e-73 280.8 387 45.0
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.8e-72 277.7 383 43.3
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.5e-71 274.6 381 43.8
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 3.3e-71 273.5 375 44.0
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 8.1e-70 268.9 374 46.3
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 8.4e-67 258.8 313 49.2
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 3.2e-66 256.9 340 44.4
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 1.2e-65 255.0 324 45.7
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 2.7e-65 253.8 320 47.5
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 5.7e-63 246.1 320 46.2
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 1.0e-59 235.3 298 47.3
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 2.9e-59 233.8 357 41.5
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 4.6e-57 226.5 314 43.6
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.4e-53 214.9 294 44.2
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 6.9e-53 212.6 301 40.9
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 7.9e-49 199.1 302 41.4
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 4.2e-34 150.2 282 38.7
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 8.0e-33 146.0 141 56.0
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 1.8e-29 134.8 344 30.5
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 7.0e-29 132.9 116 58.6
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.3e-22 112.1 184 41.8
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 9.1e-21 105.9 159 41.5
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.3e-19 102.1 109 49.5
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 1.5e-18 98.6 536 25.0
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 1.8e-16 91.7 72 61.1
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.5e-15 88.6 88 48.9
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.6e-15 87.8 108 45.4
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 1.7e-14 85.1 82 53.7
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.2e-14 84.7 84 57.1
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.1e-13 80.9 84 51.2
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 5.0e-11 73.6 83 49.4
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.2e-09 68.9 82 50.0


User provided reference genes

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