Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g119600 Chlamydomonas reinhardtii HOM05D003620 ORTHO05D004261 2.7e-200 701.8 364 100.0
Manes.07G024800 Manihot esculenta HOM05D003620 ORTHO05D004261 1.0e-45 188.3 327 36.7
Medtr2g008190 Medicago truncatula HOM05D003620 ORTHO05D004261 1.7e-45 187.6 315 38.4
RcHm_v2.0_Chr7g0225351 Rosa chinensis HOM05D003620 ORTHO05D004261 1.7e-45 187.6 319 38.9
VMungo0540G0770 Vigna mungo HOM05D003620 ORTHO05D004261 1.7e-45 187.6 323 38.1
Atru.chr6.881 Acer truncatum HOM05D003620 ORTHO05D004261 3.8e-45 186.4 315 38.4
FAN04G1518 Fragaria x ananassa HOM05D003620 ORTHO05D004261 3.8e-45 186.4 321 39.9
FAN08G3618 Fragaria x ananassa HOM05D003620 ORTHO05D004261 3.8e-45 186.4 321 40.2
FvH4_5g30530 Fragaria vesca HOM05D003620 ORTHO05D004261 5.0e-45 186.0 321 39.9
FAN18G1779 Fragaria x ananassa HOM05D003620 ORTHO05D004261 5.0e-45 186.0 321 39.9
TPR.G19731 Trifolium pratense HOM05D003620 ORTHO05D004261 8.5e-45 185.3 315 38.7
ATR1136G049 Amborella trichopoda HOM05D003620 ORTHO05D004261 1.5e-44 184.5 312 38.1
Glyma.08G181200 Glycine max HOM05D003620 ORTHO05D004261 5.5e-44 182.6 323 37.5
MD08G1222700 Malus domestica HOM05D003620 ORTHO05D004261 5.5e-44 182.6 319 37.3
Psat1g218440 Pisum sativum HOM05D003620 ORTHO05D004261 5.5e-44 182.6 314 38.9
AUR62004784 Chenopodium quinoa HOM05D003620 ORTHO05D004261 7.2e-44 182.2 313 38.3
Migut.B00643 Erythranthe guttata HOM05D003620 ORTHO05D004261 2.1e-43 180.6 251 39.8
SMO244G0007 Selaginella moellendorffii HOM05D003620 ORTHO05D004261 2.1e-43 180.6 309 38.8
Thecc.02G144000 Theobroma cacao HOM05D003620 ORTHO05D004261 2.1e-43 180.6 319 38.6
Ca_00113_v3 Cicer arietinum L. HOM05D003620 ORTHO05D004261 2.7e-43 180.3 323 36.5
Lalb_Chr18g0060681 Lupinus albus HOM05D003620 ORTHO05D004261 3.6e-43 179.9 323 36.5
THA.LOC104817775 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 3.6e-43 179.9 317 37.9
Gohir.A12G013800 Gossypium hirsutum HOM05D003620 ORTHO05D004261 4.7e-43 179.5 322 37.0
Eucgr.G00656 Eucalyptus grandis HOM05D003620 ORTHO05D004261 8.0e-43 178.7 330 35.5
Aa31LG3G330 Aethionema arabicum HOM05D003620 ORTHO05D004261 1.4e-42 177.9 317 36.6
Prupe.1G560600 Prunus persica HOM05D003620 ORTHO05D004261 1.4e-42 177.9 319 36.7
Phvul.006G208800 Phaseolus vulgaris HOM05D003620 ORTHO05D004261 1.8e-42 177.6 323 37.5
Gohir.D12G014500 Gossypium hirsutum HOM05D003620 ORTHO05D004261 2.3e-42 177.2 322 36.6
CSS0011415 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 3.0e-42 176.8 322 36.6
Carub.0007s1498 Capsella rubella HOM05D003620 ORTHO05D004261 4.0e-42 176.4 308 37.3
Os01g0959800 Oryza sativa ssp. japonica HOM05D003620 ORTHO05D004261 5.2e-42 176.0 311 38.6
Potri.001G172400 Populus trichocarpa HOM05D003620 ORTHO05D004261 5.2e-42 176.0 322 36.0
CARHR233480 Cardamine hirsuta HOM05D003620 ORTHO05D004261 8.8e-42 175.3 308 37.0
AT4G25970 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 1.2e-41 174.9 308 36.7
AL7G27030 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 1.5e-41 174.5 308 36.7
Lj6g0005534 Lotus japonicus HOM05D003620 ORTHO05D004261 1.5e-41 174.5 315 36.8
Nitab4.5_0007987g0020 Nicotiana tabacum HOM05D003620 ORTHO05D004261 2.0e-41 174.1 251 40.2
AagrBONN_evm.TU.Sc2ySwM_228.3970 Anthoceros agrestis HOM05D003620 ORTHO05D004261 2.6e-41 173.7 247 42.5
MSTRG.16561 Avicennia marina HOM05D003620 ORTHO05D004261 2.6e-41 173.7 324 36.7
BcaC09g50725 Brassica carinata HOM05D003620 ORTHO05D004261 2.6e-41 173.7 308 37.0
A01p17230 Brassica napus HOM05D003620 ORTHO05D004261 2.6e-41 173.7 308 37.0
C01p21590 Brassica napus HOM05D003620 ORTHO05D004261 2.6e-41 173.7 308 37.0
BolC1t02078H Brassica oleracea HOM05D003620 ORTHO05D004261 2.6e-41 173.7 308 37.0
BraA01t01679Z Brassica rapa HOM05D003620 ORTHO05D004261 2.6e-41 173.7 308 37.0
Cfa005564 Carpinus fangiana HOM05D003620 ORTHO05D004261 2.6e-41 173.7 315 37.1
Manes.10G117200 Manihot esculenta HOM05D003620 ORTHO05D004261 2.6e-41 173.7 310 36.5
PSO675G2802 Papaver somniferum HOM05D003620 ORTHO05D004261 2.6e-41 173.7 320 36.2
Sc09g0004430 Simmondsia chinensis HOM05D003620 ORTHO05D004261 2.6e-41 173.7 314 37.3
Thhalv10024661m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 3.4e-41 173.3 308 36.7
Gorai.008G014600 Gossypium raimondii HOM05D003620 ORTHO05D004261 3.4e-41 173.3 322 36.0
Mapoly0064s0044 Marchantia polymorpha HOM05D003620 ORTHO05D004261 4.4e-41 172.9 314 38.2
BcaNung03773 Brassica carinata HOM05D003620 ORTHO05D004261 5.7e-41 172.6 308 37.0
PSO541G1613 Papaver somniferum HOM05D003620 ORTHO05D004261 5.7e-41 172.6 320 36.2
TAR625G1066 Trochodendron aralioides HOM05D003620 ORTHO05D004261 5.7e-41 172.6 326 36.2
A10p14580 Brassica napus HOM05D003620 ORTHO05D004261 1.3e-40 171.4 310 36.8
BraA10t43545Z Brassica rapa HOM05D003620 ORTHO05D004261 1.3e-40 171.4 310 36.8
CDE08G1148 Ceratophyllum demersum HOM05D003620 ORTHO05D004261 1.3e-40 171.4 315 37.1
Dinv24230 Davidia involucrata HOM05D003620 ORTHO05D004261 1.3e-40 171.4 310 36.8
MBI06_g29671_MAGBIO Magnolia biondii HOM05D003620 ORTHO05D004261 1.3e-40 171.4 237 40.5
BcaB08g36077 Brassica carinata HOM05D003620 ORTHO05D004261 1.7e-40 171.0 310 36.8
Thhalv10012950m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 1.7e-40 171.0 310 37.1
Sabra01G0139300 Salix brachista HOM05D003620 ORTHO05D004261 1.7e-40 171.0 315 36.2
THA.LOC104811774 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 1.7e-40 171.0 317 36.3
Sp6g18920 Schrenkiella parvula HOM05D003620 ORTHO05D004261 2.2e-40 170.6 310 36.8
BcaC04g19991 Brassica carinata HOM05D003620 ORTHO05D004261 2.8e-40 170.2 310 36.8
C09p49020 Brassica napus HOM05D003620 ORTHO05D004261 2.8e-40 170.2 310 36.8
BolC9t57753H Brassica oleracea HOM05D003620 ORTHO05D004261 2.8e-40 170.2 310 36.8
Peaxi162Scf00001g00523 Petunia axillaris HOM05D003620 ORTHO05D004261 4.9e-40 169.5 250 39.6
Potri.003G061700 Populus trichocarpa HOM05D003620 ORTHO05D004261 4.9e-40 169.5 322 36.0
CARHR270980 Cardamine hirsuta HOM05D003620 ORTHO05D004261 6.3e-40 169.1 310 36.5
Sabra03G0035800 Salix brachista HOM05D003620 ORTHO05D004261 6.3e-40 169.1 250 40.4
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 8.3e-40 168.7 323 35.6
CANSAT11G1106 Cannabis sativa HOM05D003620 ORTHO05D004261 1.1e-39 168.3 312 36.2
Nn1g06259 Nelumbo nucifera HOM05D003620 ORTHO05D004261 1.1e-39 168.3 325 35.4
TWI14G0354 Tripterygium wilfordii HOM05D003620 ORTHO05D004261 1.1e-39 168.3 323 35.9
EL10Ac4g08941 Beta vulgaris HOM05D003620 ORTHO05D004261 1.4e-39 167.9 307 38.8
CSS0027167 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 1.4e-39 167.9 316 36.4
Carub.0008s1770 Capsella rubella HOM05D003620 ORTHO05D004261 1.4e-39 167.9 310 36.8
CAN.G523.97 Capsicum annuum HOM05D003620 ORTHO05D004261 1.4e-39 167.9 315 36.2
ECA236G2397 Erigeron canadensis HOM05D003620 ORTHO05D004261 1.4e-39 167.9 252 40.5
PGR042G1212 Punica granatum HOM05D003620 ORTHO05D004261 1.4e-39 167.9 336 35.1
QL02p098754 Quercus lobata HOM05D003620 ORTHO05D004261 1.8e-39 167.5 249 41.0
Solyc01g104880.3 Solanum lycopersicum HOM05D003620 ORTHO05D004261 2.4e-39 167.2 258 38.0
Pp3c15_7420 Physcomitrium patens HOM05D003620 ORTHO05D004261 3.1e-39 166.8 309 35.6
Sopen01g047400 Solanum pennellii HOM05D003620 ORTHO05D004261 3.1e-39 166.8 258 38.0
HanXRQChr11g0337651 Helianthus annuus HOM05D003620 ORTHO05D004261 4.1e-39 166.4 251 39.4
CANSAT11G0919 Cannabis sativa HOM05D003620 ORTHO05D004261 5.4e-39 166.0 312 35.6
Actinidia38967 Actinidia chinensis HOM05D003620 ORTHO05D004261 9.1e-39 165.2 325 35.7
AT5G57190 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 9.1e-39 165.2 306 36.3
vmacro01806 Vaccinium macrocarpon HOM05D003620 ORTHO05D004261 9.1e-39 165.2 322 35.7
Aqoxy6G00354 Aquilegia oxysepala HOM05D003620 ORTHO05D004261 2.0e-38 164.1 328 34.8
SalBow5G2235 Salvia bowleyana HOM05D003620 ORTHO05D004261 2.0e-38 164.1 232 39.7
SalBow5G2754 Salvia bowleyana HOM05D003620 ORTHO05D004261 2.0e-38 164.1 232 39.7
Sed0005951 Sechium edule HOM05D003620 ORTHO05D004261 2.0e-38 164.1 323 35.0
MELO3C018674.2 Cucumis melo HOM05D003620 ORTHO05D004261 2.7e-38 163.7 328 34.5
AL161U10010 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 4.5e-38 162.9 318 35.2
AL8G33150 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 4.5e-38 162.9 306 35.9
Cc02_g21940 Coffea canephora HOM05D003620 ORTHO05D004261 7.7e-38 162.2 238 39.1
HanXRQChr03g0065791 Helianthus annuus HOM05D003620 ORTHO05D004261 2.3e-37 160.6 259 37.8
DCAR_001444 Daucus carota HOM05D003620 ORTHO05D004261 2.9e-37 160.2 240 38.8
CsaV3_7G006180 Cucumis sativus L. HOM05D003620 ORTHO05D004261 6.6e-37 159.1 325 34.5
PRCOL_00006167 Prasinoderma coloniale HOM05D003620 ORTHO05D004261 6.6e-37 159.1 317 31.2
Duzib132G0147 Durio zibethinus HOM05D003620 ORTHO05D004261 1.9e-36 157.5 330 35.8
Oeu047368.1 Olea europaea HOM05D003620 ORTHO05D004261 1.9e-36 157.5 226 40.3
AUR62003395 Chenopodium quinoa HOM05D003620 ORTHO05D004261 5.5e-36 156.0 249 40.6
COL.COLO4_20874 Corchorus olitorius HOM05D003620 ORTHO05D004261 5.5e-36 156.0 322 36.0
Lsat_1_v5_gn_7_80501 Lactuca sativa HOM05D003620 ORTHO05D004261 7.2e-36 155.6 239 38.1
Lsat_1_v5_gn_9_117920 Lactuca sativa HOM05D003620 ORTHO05D004261 7.2e-36 155.6 251 38.2
GSVIVG01029732001 Vitis vinifera HOM05D003620 ORTHO05D004261 1.6e-35 154.5 234 38.5
ClCG09G013430 Citrullus lanatus HOM05D003620 ORTHO05D004261 2.8e-35 153.7 240 37.9
Peaxi162Scf00152g01227 Petunia axillaris HOM05D003620 ORTHO05D004261 2.3e-34 150.6 249 38.2
Actinidia00242 Actinidia chinensis HOM05D003620 ORTHO05D004261 5.2e-34 149.4 328 34.5
HPP92_019398 Vanilla planifolia HOM05D003620 ORTHO05D004261 6.8e-34 149.1 282 36.2
CiPaw.05G039200 Carya illinoinensis HOM05D003620 ORTHO05D004261 2.2e-32 144.1 282 35.8
FAN13G1243 Fragaria x ananassa HOM05D003620 ORTHO05D004261 8.3e-32 142.1 321 34.3
Oeu037206.2 Olea europaea HOM05D003620 ORTHO05D004261 1.6e-30 137.9 297 34.3
Nitab4.5_0008610g0050 Nicotiana tabacum HOM05D003620 ORTHO05D004261 1.9e-28 131.0 251 34.3
Aa31LG3G13090 Aethionema arabicum HOM05D003620 ORTHO05D004261 4.3e-28 129.8 231 35.9
Rhsim11G0134200 Rhododendron simsii HOM05D003620 ORTHO05D004261 1.8e-26 124.4 322 32.3
Lj6g0009012 Lotus japonicus HOM05D003620 ORTHO05D004261 2.3e-26 124.0 208 37.5
CBR_g4358 Chara braunii HOM05D003620 ORTHO05D004261 6.8e-26 122.5 246 34.1
Cpa.g.sc845.5 Carica papaya HOM05D003620 ORTHO05D004261 2.4e-23 114.0 169 42.0
Lj5C243T9 Lonicera japonica HOM05D003620 ORTHO05D004261 1.2e-22 111.7 218 32.6
Ciclev10000710m.g Citrus clementina HOM05D003620 ORTHO05D004261 6.2e-19 99.4 191 34.6
Zm00001eb362570 Zea mays HOM05D003620 ORTHO05D004261 4.0e-18 96.7 190 37.9
Pp3s32_287 Physcomitrium patens HOM05D003620 ORTHO05D007438 8.3e-16 89.0 225 30.7
C09p20220 Brassica napus HOM05D003620 ORTHO05D004261 1.1e-15 88.6 136 39.0
BolC9t54929H Brassica oleracea HOM05D003620 ORTHO05D004261 1.1e-15 88.6 136 39.0
Hund22190 Selenicereus undatus HOM05D003620 ORTHO05D004261 1.1e-15 88.6 186 35.5
BolC7t41195H Brassica oleracea HOM05D003620 ORTHO05D004261 1.5e-12 78.2 115 40.0
BcaC04g22352 Brassica carinata HOM05D003620 ORTHO05D004261 7.3e-12 75.9 124 37.9
C07p07770 Brassica napus HOM05D003620 ORTHO05D004261 2.1e-11 74.3 83 48.2
MELO3C003259.2 Cucumis melo HOM05D003620 ORTHO05D004261 1.1e-10 72.0 197 32.5
Glyma.15G051100 Glycine max HOM05D003620 ORTHO05D004261 2.3e-10 70.9 154 32.5
Ciclev10002987m.g Citrus clementina HOM05D003620 ORTHO05D004261 4.9e-08 63.2 69 44.9
SEGI_34524 Sequoiadendron giganteum HOM05D003620 ORTHO05D004261 7.1e-07 59.3 70 41.4
Rhsim01G0100800 Rhododendron simsii HOM05D005983 ORTHO05D007438 9.2e-07 58.9 206 26.2
EL10Ac5g12377 Beta vulgaris HOM05D005983 ORTHO05D007438 1.6e-06 58.2 294 24.8
unitig_744.g24471 Utricularia gibba HOM05D005983 ORTHO05D007438 1.6e-06 58.2 222 26.6
Prupe.5G066800 Prunus persica HOM05D005983 ORTHO05D007438 2.1e-06 57.8 262 25.2
GSVIVG01004724001 Vitis vinifera HOM05D005983 ORTHO05D007438 2.7e-06 57.4 295 24.1
Gohir.A03G007500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 4.6e-06 56.6 309 22.7
Gohir.D03G163500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 7.8e-06 55.8 309 22.3
Gorai.003G172200 Gossypium raimondii HOM05D005983 ORTHO05D007438 7.8e-06 55.8 309 22.3


User provided reference genes

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