Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g055428 Chlamydomonas reinhardtii HOM05D014487 ORTHO05D016509 1.8e-184 649.4 406 100.0
SMO347G0459 Selaginella moellendorffii HOM05D014487 ORTHO05D016509 3.5e-23 113.6 127 47.2
CBR_g38208 Chara braunii HOM05D014487 ORTHO05D016509 1.2e-18 98.6 122 45.9
SMO358G0310 Selaginella moellendorffii HOM05D014487 ORTHO05D016509 1.5e-18 98.2 127 44.1
SMO146G0063 Selaginella moellendorffii HOM05D014487 ORTHO05D016509 2.6e-18 97.4 127 43.3
AagrBONN_evm.TU.Sc2ySwM_362.2357 Anthoceros agrestis HOM05D014487 ORTHO05D016509 7.6e-18 95.9 122 40.2
PRCOL_00003396 Prasinoderma coloniale HOM05D014487 ORTHO05D016509 1.8e-14 84.7 122 38.5
Mapoly0004s0035 Marchantia polymorpha HOM05D014487 ORTHO05D016509 1.8e-11 74.7 133 33.1
Cre17.g727900 Chlamydomonas reinhardtii HOM05D050567 ORTHO05D146723 5.8e-10 69.7 133 33.8
Prupe.7G133900 Prunus persica HOM05D000227 ORTHO05D004725 2.1e-07 61.2 112 33.9
BcaC09g50023 Brassica carinata HOM05D000227 ORTHO05D004725 2.7e-07 60.8 65 44.6
C01p29890 Brassica napus HOM05D000227 ORTHO05D004725 2.7e-07 60.8 65 44.6
BolC1t02931H Brassica oleracea HOM05D000227 ORTHO05D004725 2.7e-07 60.8 65 44.6
Aa31LG4G18590 Aethionema arabicum HOM05D000227 ORTHO05D004725 3.5e-07 60.5 65 43.1
AL5G30490 Arabidopsis lyrata HOM05D000227 ORTHO05D004725 3.5e-07 60.5 65 43.1
AT3G50360 Arabidopsis thaliana HOM05D000227 ORTHO05D004725 3.5e-07 60.5 65 43.1
CARHR159830 Cardamine hirsuta HOM05D000227 ORTHO05D004725 3.5e-07 60.5 65 43.1
Manes.13G124900 Manihot esculenta HOM05D000227 ORTHO05D004725 3.5e-07 60.5 65 43.1
Manes.12G101100 Manihot esculenta HOM05D000227 ORTHO05D004725 4.6e-07 60.1 65 44.6
CSS0046781 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D004725 6.0e-07 59.7 65 43.1
Cc00_g00950 Coffea canephora HOM05D000227 ORTHO05D004725 6.0e-07 59.7 65 43.1
Eucgr.H01660 Eucalyptus grandis HOM05D000227 ORTHO05D004725 6.0e-07 59.7 57 45.6
PSO541G6342 Papaver somniferum HOM05D000227 ORTHO05D004725 6.0e-07 59.7 68 39.7
PSO675G3845 Papaver somniferum HOM05D000227 ORTHO05D004725 6.0e-07 59.7 68 39.7
Rhsim08G0100800 Rhododendron simsii HOM05D000227 ORTHO05D004725 6.0e-07 59.7 65 43.1
Lalb_Chr09g0323161 Lupinus albus HOM05D000227 ORTHO05D004725 7.9e-07 59.3 65 43.1
AUR62000553 Chenopodium quinoa HOM05D000227 ORTHO05D004725 1.0e-06 58.9 65 43.1
Os07g0618800 Oryza sativa ssp. japonica HOM05D000227 ORTHO05D004725 1.0e-06 58.9 65 43.1
Oeu063697.1 Olea europaea HOM05D000227 ORTHO05D004725 1.3e-06 58.5 54 48.1
Zm00001eb223800 Zea mays HOM05D000227 ORTHO05D004725 1.3e-06 58.5 54 48.1
MCO09G601 Micromonas commoda HOM05D000227 ORTHO05D000451 1.8e-06 58.2 53 47.2
ECA248G3620 Erigeron canadensis HOM05D000227 ORTHO05D004725 2.3e-06 57.8 68 39.7
Glyma.18G101100 Glycine max HOM05D000227 ORTHO05D004725 2.3e-06 57.8 63 41.3
CAN.G7.22 Capsicum annuum HOM05D000227 ORTHO05D004725 3.0e-06 57.4 65 43.1
Nitab4.5_0009710g0010 Nicotiana tabacum HOM05D000227 ORTHO05D004725 3.0e-06 57.4 54 46.3
Solyc04g026350.3 Solanum lycopersicum HOM05D000227 ORTHO05D004725 3.0e-06 57.4 65 43.1
Sopen04g015290 Solanum pennellii HOM05D000227 ORTHO05D004725 3.0e-06 57.4 65 43.1
THA.LOC104819845 Tarenaya hassleriana HOM05D000227 ORTHO05D004725 3.0e-06 57.4 68 41.2
Cpa.g.sc55.154 Carica papaya HOM05D000227 ORTHO05D004725 3.9e-06 57.0 57 42.1
Peaxi162Scf00577g00213 Petunia axillaris HOM05D000227 ORTHO05D004725 5.1e-06 56.6 65 43.1
SMO169G0076 Selaginella moellendorffii HOM05D000227 ORTHO05D000451 5.1e-06 56.6 64 42.2
AagrBONN_evm.TU.Sc2ySwM_117.2341 Anthoceros agrestis HOM05D002844 ORTHO05D011031 6.7e-06 56.2 54 46.3
BcaNung02517 Brassica carinata HOM05D000227 ORTHO05D004725 6.7e-06 56.2 54 46.3
Lalb_Chr01g0017141 Lupinus albus HOM05D000227 ORTHO05D000451 6.7e-06 56.2 64 42.2
Aa31LG2G3090 Aethionema arabicum HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
AL2G24200 Arabidopsis lyrata HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
AL7G46650 Arabidopsis lyrata HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
AT4G37010 Arabidopsis thaliana HOM05D000227 ORTHO05D004725 8.7e-06 55.8 54 46.3
AT5G37780 Arabidopsis thaliana HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
MSTRG.10766 Avicennia marina HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
MSTRG.6278 Avicennia marina HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
BcaB03g15270 Brassica carinata HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
BcaB06g27705 Brassica carinata HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
BcaC08g46056 Brassica carinata HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
C04p49510 Brassica napus HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 8.7e-06 55.8 54 46.3
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 8.7e-06 55.8 54 46.3
Carub.0002s1246 Capsella rubella HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
Carub.0007s0321 Capsella rubella HOM05D000227 ORTHO05D004725 8.7e-06 55.8 54 46.3
Carub.0007s3294 Capsella rubella HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
CAN.G128.108 Capsicum annuum HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
CARHR058380 Cardamine hirsuta HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
CARHR215030 Cardamine hirsuta HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
AUR62025115 Chenopodium quinoa HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
AUR62037164 Chenopodium quinoa HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
Thhalv10019293m.g Eutrema salsugineum HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
Thhalv10027976m.g Eutrema salsugineum HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
Os05g0491100 Oryza sativa ssp. japonica HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
Sp5g21490 Schrenkiella parvula HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
Sp7g04290 Schrenkiella parvula HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
HPP92_028461 Vanilla planifolia HOM05D000227 ORTHO05D000451 8.7e-06 55.8 64 40.6
GSVIVG01022137001 Vitis vinifera HOM05D000227 ORTHO05D004725 8.7e-06 55.8 65 40.0


User provided reference genes

Program Settings