Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g053288 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D018303 1.2e-231 806.2 442 100.0
Mapoly0071s0005 Marchantia polymorpha HOM05D003501 ORTHO05D018303 3.3e-59 233.4 369 39.0
SMO364G0656 Selaginella moellendorffii HOM05D003501 ORTHO05D018303 1.1e-41 175.3 357 35.9
PRCOL_00003579 Prasinoderma coloniale HOM05D003501 ORTHO05D018303 3.8e-39 166.8 384 37.5
AagrBONN_evm.TU.Sc2ySwM_117.3442 Anthoceros agrestis HOM05D003501 ORTHO05D018303 9.8e-27 125.6 356 30.3
MCO04G339 Micromonas commoda HOM05D003501 ORTHO05D018303 7.2e-22 109.4 482 27.8
Cfa021454 Carpinus fangiana HOM05D003501 ORTHO05D018303 8.3e-18 95.9 435 27.6
Pp3c13_13150 Physcomitrium patens HOM05D003501 ORTHO05D018303 3.5e-16 90.5 380 25.3
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 9.5e-14 82.4 385 25.7
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 1.2e-13 82.0 385 25.5
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 1.6e-13 81.6 385 25.5
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 1.8e-12 78.2 381 26.2
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 2.3e-12 77.8 384 24.7
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 2.0e-11 74.7 337 25.2
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 7.5e-11 72.8 339 25.7
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 9.8e-11 72.4 336 25.9
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 1.3e-10 72.0 337 25.2
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 1.7e-10 71.6 337 25.2
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 2.9e-10 70.9 338 25.7
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 2.9e-10 70.9 338 25.7
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 2.9e-10 70.9 388 25.8
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 2.9e-10 70.9 373 25.5
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 3.7e-10 70.5 285 24.6
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 6.4e-10 69.7 337 25.8
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 8.3e-10 69.3 339 25.4
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 8.3e-10 69.3 338 25.1
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 1.1e-09 68.9 337 23.7
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 1.1e-09 68.9 340 25.9
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 1.4e-09 68.6 337 25.8
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 1.4e-09 68.6 350 24.9
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 1.8e-09 68.2 337 24.3
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 3.2e-09 67.4 338 25.4
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 3.2e-09 67.4 330 25.8
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 4.1e-09 67.0 336 23.5
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 7.0e-09 66.2 338 25.1
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 9.2e-09 65.9 343 24.5
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 9.2e-09 65.9 338 24.9
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 9.2e-09 65.9 277 25.6
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 1.6e-08 65.1 336 24.7
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.6e-08 65.1 338 24.3
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 2.0e-08 64.7 338 24.0
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 3.5e-08 63.9 339 25.4
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 3.5e-08 63.9 335 24.2
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 3.5e-08 63.9 338 24.3
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 4.6e-08 63.5 338 24.0
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 4.6e-08 63.5 343 23.9
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 7.8e-08 62.8 339 24.8
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 1.0e-07 62.4 380 23.7
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 1.0e-07 62.4 337 23.1
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 1.3e-07 62.0 337 23.1
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 3.0e-07 60.8 336 22.9
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 3.0e-07 60.8 338 24.3
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 3.9e-07 60.5 386 23.6
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 6.6e-07 59.7 338 25.4
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 6.6e-07 59.7 379 25.3
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 1.5e-06 58.5 381 23.4
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 2.5e-06 57.8 339 25.1
Nitab4.5_0005797g0050 Nicotiana tabacum HOM05D003501 ORTHO05D004388 3.3e-06 57.4 237 24.1


User provided reference genes

Program Settings