Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g031100 Chlamydomonas reinhardtii HOM05D005410 ORTHO05D007394 7.8e-186 653.7 335 100.0
MCO13G101 Micromonas commoda HOM05D005410 ORTHO05D007394 3.0e-68 263.1 302 46.7
PRCOL_00004676 Prasinoderma coloniale HOM05D005410 ORTHO05D007394 1.3e-60 237.7 263 44.9
CBR_g66797 Chara braunii HOM05D005410 ORTHO05D007394 3.9e-52 209.5 281 39.9
Pp3c19_15590 Physcomitrium patens HOM05D005410 ORTHO05D007394 2.2e-47 193.7 281 37.7
Mapoly0020s0152 Marchantia polymorpha HOM05D005410 ORTHO05D007394 4.2e-46 189.5 329 35.0
SMO238G0020 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 2.1e-45 187.2 258 37.2
SMO329G0030 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 6.0e-45 185.7 258 36.8
SEGI_35670 Sequoiadendron giganteum HOM05D005410 ORTHO05D007394 3.7e-42 176.4 261 37.2
HPP92_001905 Vanilla planifolia HOM05D005410 ORTHO05D007394 3.7e-42 176.4 289 35.6
Cpa.g.sc119.36 Carica papaya HOM05D005410 ORTHO05D007394 2.0e-40 170.6 265 35.8
Lj1A521T33 Lonicera japonica HOM05D005410 ORTHO05D007394 4.5e-40 169.5 262 34.4
Lj1A522T64 Lonicera japonica HOM05D005410 ORTHO05D007394 4.5e-40 169.5 262 34.4
HanXRQChr07g0186621 Helianthus annuus HOM05D005410 ORTHO05D007394 2.2e-39 167.2 287 33.8
PGR102G1996 Punica granatum HOM05D005410 ORTHO05D007394 2.2e-39 167.2 277 31.8
arahy.Tifrunner.gnm1.ann1.63K8WX Arachis hypogaea HOM05D005410 ORTHO05D007394 4.9e-39 166.0 256 35.2
Oeu023974.1 Olea europaea HOM05D005410 ORTHO05D007394 4.9e-39 166.0 266 35.3
Oeu060891.1 Olea europaea HOM05D005410 ORTHO05D007394 4.9e-39 166.0 263 34.6
arahy.Tifrunner.gnm1.ann1.GYZC8Z Arachis hypogaea HOM05D005410 ORTHO05D007394 6.4e-39 165.6 256 35.2
AUR62005847 Chenopodium quinoa HOM05D005410 ORTHO05D007394 6.4e-39 165.6 265 34.0
FAN16G2022 Fragaria x ananassa HOM05D005410 ORTHO05D007394 6.4e-39 165.6 265 34.7
Medtr8g088420 Medicago truncatula HOM05D005410 ORTHO05D007394 6.4e-39 165.6 265 35.1
RcHm_v2.0_Chr5g0083861 Rosa chinensis HOM05D005410 ORTHO05D007394 6.4e-39 165.6 265 35.1
Lj4g0005740 Lotus japonicus HOM05D005410 ORTHO05D007394 1.1e-38 164.9 279 34.1
Oeu023977.1 Olea europaea HOM05D005410 ORTHO05D007394 1.4e-38 164.5 266 35.0
ATR0697G079 Amborella trichopoda HOM05D005410 ORTHO05D007394 1.9e-38 164.1 266 35.3
vmacro17045 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 1.9e-38 164.1 282 33.3
Atru.chr3.2102 Acer truncatum HOM05D005410 ORTHO05D007394 2.4e-38 163.7 262 34.0
Atru.chr3.2395 Acer truncatum HOM05D005410 ORTHO05D007394 2.4e-38 163.7 262 34.0
FAN25G1403 Fragaria x ananassa HOM05D005410 ORTHO05D007394 2.4e-38 163.7 265 34.7
PSO384G0864 Papaver somniferum HOM05D005410 ORTHO05D007394 2.4e-38 163.7 302 32.5
Phvul.002G247200 Phaseolus vulgaris HOM05D005410 ORTHO05D007394 2.4e-38 163.7 258 34.9
Hund13622 Selenicereus undatus HOM05D005410 ORTHO05D007394 2.4e-38 163.7 282 34.0
PSO339G0242 Papaver somniferum HOM05D005410 ORTHO05D007394 3.2e-38 163.3 302 32.5
Thecc.09G203200 Theobroma cacao HOM05D005410 ORTHO05D007394 3.2e-38 163.3 281 33.1
MSTRG.12800 Avicennia marina HOM05D005410 ORTHO05D007394 4.2e-38 162.9 336 31.2
FvH4_3g45781 Fragaria vesca HOM05D005410 ORTHO05D007394 4.2e-38 162.9 265 34.3
FAN11G0543 Fragaria x ananassa HOM05D005410 ORTHO05D007394 4.2e-38 162.9 265 34.3
FAN11G0605 Fragaria x ananassa HOM05D005410 ORTHO05D007394 4.2e-38 162.9 265 34.3
Gohir.A04G090700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 4.2e-38 162.9 265 33.6
Gohir.D04G130700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 4.2e-38 162.9 265 33.2
Gorai.012G114400 Gossypium raimondii HOM05D005410 ORTHO05D007394 4.2e-38 162.9 265 33.2
Sabra03G0165200 Salix brachista HOM05D005410 ORTHO05D007394 4.2e-38 162.9 278 33.1
Migut.N00542 Erythranthe guttata HOM05D005410 ORTHO05D007394 5.5e-38 162.5 329 31.9
Glyma.08G124900 Glycine max HOM05D005410 ORTHO05D007394 5.5e-38 162.5 259 35.1
MD03G1003100 Malus domestica HOM05D005410 ORTHO05D007394 5.5e-38 162.5 293 32.8
SalBow3G3111 Salvia bowleyana HOM05D005410 ORTHO05D007394 5.5e-38 162.5 266 34.2
Ciclev10015873m.g Citrus clementina HOM05D005410 ORTHO05D007394 7.1e-38 162.2 261 33.7
COL.COLO4_07519 Corchorus olitorius HOM05D005410 ORTHO05D007394 7.1e-38 162.2 275 32.7
Manes.15G110100 Manihot esculenta HOM05D005410 ORTHO05D007394 7.1e-38 162.2 265 34.7
VMungo0251G1592 Vigna mungo HOM05D005410 ORTHO05D007394 9.3e-38 161.8 255 34.5
Glyma.05G166800 Glycine max HOM05D005410 ORTHO05D007394 1.2e-37 161.4 256 35.2
Lsat_1_v5_gn_6_55740 Lactuca sativa HOM05D005410 ORTHO05D007394 1.2e-37 161.4 285 32.3
Prupe.6G002700 Prunus persica HOM05D005410 ORTHO05D007394 1.6e-37 161.0 286 32.5
Sc09g0000010 Simmondsia chinensis HOM05D005410 ORTHO05D007394 1.6e-37 161.0 264 33.0
PGSC0003DMG400032122 Solanum tuberosum HOM05D005410 ORTHO05D007394 2.1e-37 160.6 278 33.8
SGA_v2.0_scaffold3G01679 Striga asiatica HOM05D005410 ORTHO05D007394 2.1e-37 160.6 284 33.1
CANSAT11G0129 Cannabis sativa HOM05D005410 ORTHO05D007394 2.7e-37 160.2 264 33.3
MD11G1002900 Malus domestica HOM05D005410 ORTHO05D007394 2.7e-37 160.2 295 33.6
AUR62032839 Chenopodium quinoa HOM05D005410 ORTHO05D007394 3.5e-37 159.8 257 33.9
Sopen01g001540 Solanum pennellii HOM05D005410 ORTHO05D007394 3.5e-37 159.8 275 33.1
CiPaw.13G177700 Carya illinoinensis HOM05D005410 ORTHO05D007394 6.0e-37 159.1 277 32.9
Potri.003G222200 Populus trichocarpa HOM05D005410 ORTHO05D007394 6.0e-37 159.1 260 34.2
Aqoxy1G00490 Aquilegia oxysepala HOM05D005410 ORTHO05D007394 7.9e-37 158.7 262 34.0
Duzib168G1987 Durio zibethinus HOM05D005410 ORTHO05D007394 7.9e-37 158.7 298 30.9
Actinidia16239 Actinidia chinensis HOM05D005410 ORTHO05D007394 1.3e-36 157.9 261 33.3
unitig_0.g1148 Utricularia gibba HOM05D005410 ORTHO05D007394 1.3e-36 157.9 298 32.2
Zm00001eb300990 Zea mays HOM05D005410 ORTHO05D007394 1.3e-36 157.9 259 32.8
Nn2g15872 Nelumbo nucifera HOM05D005410 ORTHO05D007394 1.8e-36 157.5 263 33.1
ECA233G0964 Erigeron canadensis HOM05D005410 ORTHO05D007394 2.3e-36 157.1 273 33.0
SGA_v2.0_scaffold6G03314 Striga asiatica HOM05D005410 ORTHO05D007394 2.3e-36 157.1 275 31.3
CiPaw.14G137400 Carya illinoinensis HOM05D005410 ORTHO05D007394 3.0e-36 156.8 259 32.8
DCAR_023818 Daucus carota HOM05D005410 ORTHO05D007394 3.0e-36 156.8 255 32.9
QL01p010651 Quercus lobata HOM05D005410 ORTHO05D007394 3.0e-36 156.8 309 30.1
CAN.G1834.14 Capsicum annuum HOM05D005410 ORTHO05D007394 3.9e-36 156.4 265 34.3
Nitab4.5_0000551g0050 Nicotiana tabacum HOM05D005410 ORTHO05D007394 5.1e-36 156.0 281 33.5
Nitab4.5_0006195g0040 Nicotiana tabacum HOM05D005410 ORTHO05D007394 6.7e-36 155.6 288 32.3
Aa31LG10G770 Aethionema arabicum HOM05D005410 ORTHO05D007394 8.7e-36 155.2 265 32.5
Cc01_g00190 Coffea canephora HOM05D005410 ORTHO05D007394 8.7e-36 155.2 267 33.3
Thhalv10011629m.g Eutrema salsugineum HOM05D005410 ORTHO05D007394 8.7e-36 155.2 265 32.8
Eucgr.J01758 Eucalyptus grandis HOM05D005410 ORTHO05D007394 1.5e-35 154.5 309 32.0
Sed0021908 Sechium edule HOM05D005410 ORTHO05D007394 1.5e-35 154.5 277 33.2
Lalb_Chr12g0204581 Lupinus albus HOM05D005410 ORTHO05D007394 1.9e-35 154.1 312 32.7
MBI05_g04454_MAGBIO Magnolia biondii HOM05D005410 ORTHO05D007394 1.9e-35 154.1 306 31.4
CSS0020515 Camellia sinensis var. sinensis HOM05D005410 ORTHO05D007394 2.5e-35 153.7 262 32.8
Dinv13479 Davidia involucrata HOM05D005410 ORTHO05D007394 2.5e-35 153.7 258 32.6
CARHR045150 Cardamine hirsuta HOM05D005410 ORTHO05D007394 3.3e-35 153.3 279 31.9
CDE10G1105 Ceratophyllum demersum HOM05D005410 ORTHO05D007394 3.3e-35 153.3 333 30.3
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 3.3e-35 153.3 275 32.4
Rhsim13G0233300 Rhododendron simsii HOM05D005410 ORTHO05D007394 3.3e-35 153.3 258 32.6
TAR369G0462 Trochodendron aralioides HOM05D005410 ORTHO05D007394 4.3e-35 152.9 338 29.0
AT1G55480 Arabidopsis thaliana HOM05D005410 ORTHO05D007394 7.4e-35 152.1 266 33.1
Carub.0001s4397 Capsella rubella HOM05D005410 ORTHO05D007394 7.4e-35 152.1 266 32.7
CsaV3_4G017550 Cucumis sativus L. HOM05D005410 ORTHO05D007394 9.6e-35 151.8 275 32.4
Haze_22935 Corylus avellana HOM05D005410 ORTHO05D007394 1.6e-34 151.0 262 33.2
EL10Ac4g10389 Beta vulgaris HOM05D005410 ORTHO05D007394 2.8e-34 150.2 256 32.4
Sp1g41090 Schrenkiella parvula HOM05D005410 ORTHO05D007394 2.8e-34 150.2 265 32.5
BcaB02g10821 Brassica carinata HOM05D005410 ORTHO05D007394 3.7e-34 149.8 320 30.0
THA.LOC104810318 Tarenaya hassleriana HOM05D005410 ORTHO05D007394 3.7e-34 149.8 301 31.9
AL1G63500 Arabidopsis lyrata HOM05D005410 ORTHO05D007394 4.8e-34 149.4 303 32.0
A05p17460 Brassica napus HOM05D005410 ORTHO05D007394 4.8e-34 149.4 299 30.4
BraA05t20641Z Brassica rapa HOM05D005410 ORTHO05D007394 4.8e-34 149.4 299 30.4
C06p16070 Brassica napus HOM05D005410 ORTHO05D007394 1.8e-33 147.5 319 30.4
BolC6t36806H Brassica oleracea HOM05D005410 ORTHO05D007394 1.8e-33 147.5 319 30.4
BcaC08g44199 Brassica carinata HOM05D005410 ORTHO05D007394 6.9e-33 145.6 321 30.2
Peaxi162Scf00036g00221 Petunia axillaris HOM05D005410 ORTHO05D007394 7.6e-32 142.1 279 31.9
Os07g0171100 Oryza sativa ssp. japonica HOM05D005410 ORTHO05D007394 1.7e-31 141.0 227 33.9
TAR623G0245 Trochodendron aralioides HOM05D005410 ORTHO05D007394 2.7e-29 133.7 224 33.0
TPR.G6787 Trifolium pratense HOM05D005410 ORTHO05D007394 2.3e-28 130.6 216 34.7
GSVIVG01025488001 Vitis vinifera HOM05D005410 ORTHO05D007394 9.7e-27 125.2 216 30.6
Cfa009554 Carpinus fangiana HOM05D005410 ORTHO05D007394 1.4e-25 121.3 214 33.6
Potri.001G002700 Populus trichocarpa HOM05D005410 ORTHO05D007394 1.4e-22 111.3 252 29.0
Pp3c22_13930 Physcomitrium patens HOM05D005410 ORTHO05D007394 9.4e-22 108.6 261 30.3
arahy.Tifrunner.gnm1.ann1.CQ6EI1 Arachis hypogaea HOM05D005410 ORTHO05D007394 2.1e-21 107.5 256 29.3
Psat7g064320 Pisum sativum HOM05D005410 ORTHO05D007394 6.9e-17 92.4 168 33.3
Ah.06g190610 Amaranthus hybridus HOM05D005410 ORTHO05D007394 4.5e-16 89.7 134 39.6
AagrBONN_evm.TU.Sc2ySwM_117.774 Anthoceros agrestis HOM05D005410 ORTHO05D007394 2.2e-15 87.4 143 37.1
Hma1.2p1_0256F.1_g103360 Hydrangea macrophylla HOM05D005410 ORTHO05D007394 1.2e-13 81.6 139 33.8
Solyc01g005520.4 Solanum lycopersicum HOM05D005410 ORTHO05D007394 4.7e-13 79.7 136 33.8
vmacro04262 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 4.7e-13 79.7 221 27.6
MELO3C014728.2 Cucumis melo HOM05D005410 ORTHO05D007394 2.3e-12 77.4 137 34.3
Ciclev10018072m.g Citrus clementina HOM05D005410 ORTHO05D007394 8.8e-12 75.5 82 37.8
vmacro23200 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 2.6e-11 73.9 145 31.0
CDE10G0059 Ceratophyllum demersum HOM05D005410 ORTHO05D007394 3.7e-10 70.1 82 35.4
EL10Ac8g20065 Beta vulgaris HOM05D005410 ORTHO05D007394 8.2e-10 68.9 119 35.3


User provided reference genes

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