Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g021900 Chlamydomonas reinhardtii HOM05D006401 ORTHO05D007864 1.5e-291 1005.7 628 100.0
Cc00_g00110 Coffea canephora HOM05D006401 ORTHO05D007864 1.8e-21 108.6 548 25.2
Actinidia02474 Actinidia chinensis HOM05D006401 ORTHO05D007864 6.7e-21 106.7 552 25.5
MD13G1232500 Malus domestica HOM05D006401 ORTHO05D007864 1.1e-20 105.9 466 27.9
Rhsim03G0113000 Rhododendron simsii HOM05D006401 ORTHO05D007864 3.3e-20 104.4 557 25.5
Lj4g0001613 Lotus japonicus HOM05D006401 ORTHO05D007864 8.1e-19 99.8 555 25.6
CDE05G1304 Ceratophyllum demersum HOM05D006401 ORTHO05D007864 2.4e-18 98.2 563 26.1
PSO170G1271 Papaver somniferum HOM05D006401 ORTHO05D007864 2.4e-18 98.2 554 24.0
PGR044G1973 Punica granatum HOM05D006401 ORTHO05D007864 2.4e-18 98.2 557 25.3
CBR_g44387 Chara braunii HOM05D000019 ORTHO05D000002 4.0e-18 97.4 584 27.2
ATR0626G158 Amborella trichopoda HOM05D006401 ORTHO05D007864 9.0e-18 96.3 457 26.5
Cpa.g.sc115.22 Carica papaya HOM05D006401 ORTHO05D007864 9.0e-18 96.3 541 25.3
Glyma.08G027300 Glycine max HOM05D006401 ORTHO05D007864 9.0e-18 96.3 556 25.7
Sc23g0004370 Simmondsia chinensis HOM05D006401 ORTHO05D007864 1.5e-17 95.5 557 24.1
Ciclev10008288m.g Citrus clementina HOM05D006401 ORTHO05D007864 2.0e-17 95.1 554 25.3
Zm00001eb274430 Zea mays HOM05D006401 ORTHO05D007864 2.0e-17 95.1 558 25.8
Manes.02G221700 Manihot esculenta HOM05D006401 ORTHO05D007864 4.5e-17 94.0 554 25.1
Sabra18G0128800 Salix brachista HOM05D006401 ORTHO05D007864 4.5e-17 94.0 555 26.3
CANSAT80G2545 Cannabis sativa HOM05D006401 ORTHO05D007864 5.8e-17 93.6 552 25.9
Potri.018G147400 Populus trichocarpa HOM05D006401 ORTHO05D007864 1.0e-16 92.8 550 24.9
Sabra18G0121600 Salix brachista HOM05D006401 ORTHO05D007864 1.0e-16 92.8 557 26.6
QL11p008681 Quercus lobata HOM05D006401 ORTHO05D007864 1.3e-16 92.4 552 24.8
BraA08t32967Z Brassica rapa HOM05D006401 ORTHO05D007864 1.7e-16 92.0 560 25.4
Ca_17430_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 1.7e-16 92.0 554 24.5
Ca_17439_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 1.7e-16 92.0 554 24.5
Phvul.002G302500 Phaseolus vulgaris HOM05D006401 ORTHO05D007864 1.7e-16 92.0 556 25.7
Medtr8g101250 Medicago truncatula HOM05D006401 ORTHO05D007864 2.2e-16 91.7 557 24.8
Nn8g41133 Nelumbo nucifera HOM05D006401 ORTHO05D007864 2.2e-16 91.7 561 25.7
TAR626G0078 Trochodendron aralioides HOM05D006401 ORTHO05D007864 2.2e-16 91.7 450 25.6
Gorai.012G097600 Gossypium raimondii HOM05D006401 ORTHO05D007864 2.9e-16 91.3 450 25.6
AUR62020726 Chenopodium quinoa HOM05D006401 ORTHO05D007864 3.8e-16 90.9 445 25.8
Dinv12612 Davidia involucrata HOM05D006401 ORTHO05D007864 3.8e-16 90.9 264 31.4
EL10Ac2g03627 Beta vulgaris HOM05D006401 ORTHO05D007864 4.9e-16 90.5 564 24.8
Gohir.A04G052200 Gossypium hirsutum HOM05D006401 ORTHO05D007864 6.5e-16 90.1 450 25.3
PSO063G4133 Papaver somniferum HOM05D006401 ORTHO05D007864 1.1e-15 89.4 554 23.8
COL.COLO4_23416 Corchorus olitorius HOM05D006401 ORTHO05D007864 1.4e-15 89.0 454 25.1
CsaV3_1G004580 Cucumis sativus L. HOM05D006401 ORTHO05D007864 1.4e-15 89.0 561 25.0
Migut.J00842 Erythranthe guttata HOM05D006401 ORTHO05D007864 1.4e-15 89.0 594 24.1
Aa31LG8G10590 Aethionema arabicum HOM05D006401 ORTHO05D007864 1.9e-15 88.6 557 24.6
Ah.11g043600 Amaranthus hybridus HOM05D006401 ORTHO05D007864 1.9e-15 88.6 548 25.2
SMO232G0120 Selaginella moellendorffii HOM05D006401 ORTHO05D007864 2.5e-15 88.2 160 35.6
Glyma.05G220800 Glycine max HOM05D006401 ORTHO05D007864 3.2e-15 87.8 539 25.8
Hma1.2p1_0314F.1_g122060 Hydrangea macrophylla HOM05D006401 ORTHO05D007864 3.2e-15 87.8 563 25.2
RcHm_v2.0_Chr4g0397611 Rosa chinensis HOM05D006401 ORTHO05D007864 3.2e-15 87.8 447 25.7
A08p09710 Brassica napus HOM05D006401 ORTHO05D007864 4.2e-15 87.4 560 24.6
BolC8t48034H Brassica oleracea HOM05D006401 ORTHO05D007864 4.2e-15 87.4 565 26.2
Lalb_Chr05g0223791 Lupinus albus HOM05D006401 ORTHO05D007864 4.2e-15 87.4 554 26.0
ECA236G1652 Erigeron canadensis HOM05D006401 ORTHO05D007864 5.5e-15 87.0 458 25.5
HanXRQChr10g0309551 Helianthus annuus HOM05D006401 ORTHO05D007864 9.3e-15 86.3 449 25.4
Sp7g07040 Schrenkiella parvula HOM05D006401 ORTHO05D007864 1.2e-14 85.9 553 25.5
Atru.chr7.892 Acer truncatum HOM05D006401 ORTHO05D007864 1.6e-14 85.5 264 28.4
AT5G35400 Arabidopsis thaliana HOM05D006401 ORTHO05D007864 1.6e-14 85.5 560 25.2
arahy.Tifrunner.gnm1.ann1.Y2X24R Arachis hypogaea HOM05D006401 ORTHO05D007864 1.6e-14 85.5 559 25.2
BcaC07g37665 Brassica carinata HOM05D006401 ORTHO05D007864 1.6e-14 85.5 561 25.5
AUR62027987 Chenopodium quinoa HOM05D006401 ORTHO05D007864 1.6e-14 85.5 551 24.5
BcaB04g18045 Brassica carinata HOM05D006401 ORTHO05D007864 2.7e-14 84.7 552 24.6
CSS0033991 Camellia sinensis var. sinensis HOM05D006401 ORTHO05D007864 2.7e-14 84.7 273 28.9
Thhalv10003453m.g Eutrema salsugineum HOM05D006401 ORTHO05D007864 2.7e-14 84.7 553 25.9
Prupe.1G064000 Prunus persica HOM05D006401 ORTHO05D007864 2.7e-14 84.7 454 31.9
Sed0005150 Sechium edule HOM05D006401 ORTHO05D007864 3.5e-14 84.3 542 25.8
THA.LOC104826573 Tarenaya hassleriana HOM05D006401 ORTHO05D007864 3.5e-14 84.3 552 28.8
MSTRG.5961 Avicennia marina HOM05D006401 ORTHO05D007864 6.0e-14 83.6 556 23.7
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 7.9e-14 83.2 552 24.8
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 1.0e-13 82.8 558 25.1
FvH4_4g06050 Fragaria vesca HOM05D006401 ORTHO05D007864 1.0e-13 82.8 447 25.1
Nitab4.5_0008632g0020 Nicotiana tabacum HOM05D006401 ORTHO05D007864 1.0e-13 82.8 548 24.8
ClCG06G014090 Citrullus lanatus HOM05D006401 ORTHO05D007864 1.3e-13 82.4 190 34.2
arahy.Tifrunner.gnm1.ann1.IH6H8X Arachis hypogaea HOM05D006401 ORTHO05D007864 3.0e-13 81.3 559 24.9
SHI03133 Sapria himalayana HOM05D006401 ORTHO05D007864 3.0e-13 81.3 550 24.7
Gohir.D04G087600 Gossypium hirsutum HOM05D006401 ORTHO05D007864 5.1e-13 80.5 159 34.6
SGA_v2.0_scaffold318G48475 Striga asiatica HOM05D006401 ORTHO05D007864 5.1e-13 80.5 573 23.6
Psat7g020960 Pisum sativum HOM05D006401 ORTHO05D007864 6.7e-13 80.1 266 31.6
DCAR_010674 Daucus carota HOM05D006401 ORTHO05D007864 2.5e-12 78.2 158 31.6
MCO14G313 Micromonas commoda HOM05D006401 ORTHO05D007864 3.3e-12 77.8 566 24.7
FAN17G0150 Fragaria x ananassa HOM05D006401 ORTHO05D007864 4.3e-12 77.4 549 24.4
Lsat_1_v5_gn_5_80461 Lactuca sativa HOM05D006401 ORTHO05D007864 5.7e-12 77.0 453 27.8
Sopen07g005990 Solanum pennellii HOM05D006401 ORTHO05D007864 5.7e-12 77.0 562 23.0
TPR.G32971 Trifolium pratense HOM05D006401 ORTHO05D007864 5.7e-12 77.0 272 29.0
FAN12G0292 Fragaria x ananassa HOM05D006401 ORTHO05D007864 9.6e-12 76.3 562 23.8
Thecc.09G196700 Theobroma cacao HOM05D006401 ORTHO05D007864 9.6e-12 76.3 502 24.7
Duzib170G0999 Durio zibethinus HOM05D006401 ORTHO05D007864 2.1e-11 75.1 553 24.4
FAN22G1023 Fragaria x ananassa HOM05D006401 ORTHO05D007864 2.1e-11 75.1 555 23.8
Nitab4.5_0000899g0070 Nicotiana tabacum HOM05D006401 ORTHO05D007864 2.8e-11 74.7 551 23.8
CARHR217420 Cardamine hirsuta HOM05D006401 ORTHO05D007864 1.8e-10 72.0 370 26.8
Cfa020752 Carpinus fangiana HOM05D006401 ORTHO05D007864 1.8e-10 72.0 260 30.8
VMungo0251G1477 Vigna mungo HOM05D006401 ORTHO05D007864 1.2e-09 69.3 577 23.4
SEGI_02756 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 2.0e-09 68.6 336 25.6
MELO3C017384.2 Cucumis melo HOM05D006401 ORTHO05D007864 2.2e-08 65.1 571 23.8
Aqoxy7G02629 Aquilegia oxysepala HOM05D006401 ORTHO05D007864 2.9e-08 64.7 86 48.8
MBI13_g31574_MAGBIO Magnolia biondii HOM05D006401 ORTHO05D007864 3.8e-08 64.3 74 54.1
CiPaw.16G104000 Carya illinoinensis HOM05D006401 ORTHO05D007864 1.1e-07 62.8 81 48.1
Hund19359 Selenicereus undatus HOM05D006401 ORTHO05D007864 1.1e-07 62.8 70 55.7
GSVIVG01013042001 Vitis vinifera HOM05D006401 ORTHO05D007864 1.1e-07 62.8 76 48.7
SEGI_34102 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 1.4e-07 62.4 77 50.6
TPR.G25454 Trifolium pratense HOM05D006401 ORTHO05D007864 3.2e-07 61.2 80 47.5
Lju50A23T26 Lonicera japonica HOM05D006401 ORTHO05D007864 4.2e-07 60.8 327 23.9
FAN07G0669 Fragaria x ananassa HOM05D006401 ORTHO05D007864 7.2e-07 60.1 78 47.4
PGSC0003DMG402009562 Solanum tuberosum HOM05D006401 ORTHO05D007864 1.2e-06 59.3 71 50.7
CDE05G1402 Ceratophyllum demersum HOM05D000163 ORTHO05D007864 4.6e-06 57.4 71 43.7
Lj9A5T15 Lonicera japonica HOM05D006401 ORTHO05D007864 4.6e-06 57.4 70 48.6


User provided reference genes

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