Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 6.5e-69 263.8 125 100.0
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 4.4e-25 118.2 125 48.8
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 6.4e-24 114.4 124 47.6
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 7.0e-23 110.9 122 43.4
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 1.6e-22 109.8 128 46.9
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 6.0e-22 107.8 122 45.1
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 6.0e-22 107.8 122 45.1
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 6.0e-22 107.8 122 44.3
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 6.6e-21 104.4 122 41.0
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 4.3e-20 101.7 127 42.5
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 4.7e-19 98.2 93 54.8
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 2.0e-17 92.8 90 53.3
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 2.6e-17 92.4 79 57.0
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 7.5e-17 90.9 121 37.2
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 7.5e-17 90.9 127 40.9
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 1.7e-16 89.7 122 36.9
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 2.2e-16 89.4 122 36.9
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 2.9e-16 89.0 122 36.1
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 2.9e-16 89.0 122 36.9
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 2.9e-16 89.0 122 36.1
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 6.4e-16 87.8 122 36.1
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 8.3e-16 87.4 121 35.5
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 1.1e-15 87.0 81 56.8
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 1.9e-15 86.3 121 38.0
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 3.2e-15 85.5 50 72.0
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 4.1e-15 85.1 120 35.0
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 4.1e-15 85.1 124 33.9
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 5.4e-15 84.7 122 35.2
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 5.4e-15 84.7 123 33.3
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 5.4e-15 84.7 122 34.4
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 7.0e-15 84.3 124 33.9
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 9.2e-15 84.0 113 36.3
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 1.2e-14 83.6 50 74.0
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 1.6e-14 83.2 80 48.8
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 1.6e-14 83.2 125 36.8
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 2.1e-14 82.8 122 31.1
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 2.7e-14 82.4 122 34.4
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 4.6e-14 81.6 124 33.1
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 4.6e-14 81.6 121 33.9
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 4.6e-14 81.6 122 32.8
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 4.6e-14 81.6 118 32.2
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 6.0e-14 81.3 122 31.1
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 6.0e-14 81.3 122 33.6
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 7.8e-14 80.9 121 34.7
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 7.8e-14 80.9 121 34.7
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 1.3e-13 80.1 124 33.1
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 1.7e-13 79.7 122 35.2
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 1.7e-13 79.7 122 35.2
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 1.7e-13 79.7 122 30.3
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 2.3e-13 79.3 122 35.2
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 2.3e-13 79.3 122 35.2
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 2.3e-13 79.3 122 35.2
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 2.3e-13 79.3 122 35.2
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 2.3e-13 79.3 122 35.2
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 3.0e-13 79.0 121 33.9
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 3.9e-13 78.6 124 33.1
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 3.9e-13 78.6 125 33.6
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 5.1e-13 78.2 122 35.2
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 5.1e-13 78.2 122 35.2
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 5.1e-13 78.2 121 33.9
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 5.1e-13 78.2 125 34.4
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 6.6e-13 77.8 125 33.6
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 6.6e-13 77.8 122 33.6
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 6.6e-13 77.8 124 32.3
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 6.6e-13 77.8 122 33.6
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 6.6e-13 77.8 121 33.1
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 6.6e-13 77.8 121 33.1
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 8.6e-13 77.4 124 30.6
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 8.6e-13 77.4 122 33.6
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 1.1e-12 77.0 122 34.4
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 1.1e-12 77.0 122 32.0
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 1.1e-12 77.0 123 35.8
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 1.5e-12 76.6 125 34.4
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 1.5e-12 76.6 122 35.2
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 1.5e-12 76.6 122 34.4
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 1.5e-12 76.6 125 32.8
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 1.5e-12 76.6 121 34.7
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 1.5e-12 76.6 121 32.2
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 1.5e-12 76.6 121 32.2
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 1.9e-12 76.3 121 33.1
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 1.9e-12 76.3 122 34.4
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 1.9e-12 76.3 121 31.4
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 1.9e-12 76.3 125 35.2
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.9e-12 76.3 122 33.6
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 3.3e-12 75.5 117 31.6
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 4.3e-12 75.1 123 34.1
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 4.3e-12 75.1 122 34.4
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 5.6e-12 74.7 122 34.4
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 5.6e-12 74.7 122 34.4
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 5.6e-12 74.7 122 34.4
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 5.6e-12 74.7 125 32.8
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 7.3e-12 74.3 121 32.2
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 9.5e-12 73.9 115 32.2
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.2e-11 73.6 122 32.8
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.6e-11 73.2 122 32.8
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 2.1e-11 72.8 122 32.0
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 2.1e-11 72.8 121 32.2
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 2.1e-11 72.8 123 34.1
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 2.1e-11 72.8 100 35.0
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 2.1e-11 72.8 124 31.5
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 2.8e-11 72.4 121 30.6
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 8.9e-10 67.4 123 33.3
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 8.9e-10 67.4 123 33.3
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 8.9e-10 67.4 123 33.3
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 2.0e-09 66.2 112 31.2
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 4.4e-09 65.1 122 30.3
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 7.5e-09 64.3 124 33.9
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 1.7e-08 63.2 120 26.7
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 2.9e-08 62.4 122 30.3
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 2.9e-08 62.4 121 33.9
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 3.7e-08 62.0 118 31.4
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 3.7e-08 62.0 70 38.6
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 6.4e-08 61.2 127 32.3
AUR62041475 Chenopodium quinoa HOM05D005168 ORTHO05D006358 8.3e-08 60.8 108 35.2
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 8.3e-08 60.8 111 35.1
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 8.3e-08 60.8 122 29.5
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 1.1e-07 60.5 43 53.5
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 1.1e-07 60.5 71 42.3
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 1.9e-07 59.7 120 30.0
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 1.9e-07 59.7 122 33.6
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 1.9e-07 59.7 122 33.6
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 2.4e-07 59.3 79 36.7
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 4.1e-07 58.5 46 52.2
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 5.4e-07 58.2 98 32.7
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 5.4e-07 58.2 123 31.7
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 7.1e-07 57.8 70 42.9
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 7.1e-07 57.8 121 32.2
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 9.2e-07 57.4 109 29.4
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 1.2e-06 57.0 109 33.9
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 1.2e-06 57.0 50 48.0
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 1.6e-06 56.6 109 29.4
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 1.6e-06 56.6 109 29.4
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 1.6e-06 56.6 109 29.4
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 1.6e-06 56.6 109 29.4
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 1.6e-06 56.6 109 29.4
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 1.6e-06 56.6 109 29.4
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 1.6e-06 56.6 109 29.4
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 1.6e-06 56.6 109 29.4
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 1.6e-06 56.6 109 30.3
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 1.6e-06 56.6 116 30.2
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 2.7e-06 55.8 120 32.5
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 2.7e-06 55.8 79 35.4
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 3.5e-06 55.5 112 27.7
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 3.5e-06 55.5 122 28.7
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 4.6e-06 55.1 110 30.0
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 4.6e-06 55.1 112 27.7
SHI17132 Sapria himalayana HOM05D005168 ORTHO05D006358 4.6e-06 55.1 39 48.7
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 6.0e-06 54.7 71 38.0
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 6.0e-06 54.7 112 28.6
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 7.8e-06 54.3 91 34.1


User provided reference genes

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