Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 2.7e-76 288.9 182 100.0
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 2.1e-68 262.7 178 77.0
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 1.4e-67 260.0 178 75.8
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 5.2e-67 258.1 178 74.7
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 2.0e-66 256.1 179 74.3
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 2.0e-66 256.1 179 74.3
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 2.6e-66 255.8 178 74.2
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 4.4e-66 255.0 178 74.2
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 2.2e-65 252.7 183 77.6
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 6.3e-65 251.1 178 73.0
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 2.4e-64 249.2 176 73.3
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 7.0e-64 247.7 179 72.6
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 1.6e-63 246.5 180 80.6
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 2.0e-63 246.1 178 71.9
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 3.5e-63 245.4 176 71.0
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 4.5e-63 245.0 176 70.5
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 5.9e-63 244.6 178 70.8
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.0e-62 243.8 178 71.3
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 1.1e-61 240.4 178 68.5
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.5e-61 240.0 179 68.7
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.5e-61 240.0 179 68.7
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.5e-61 240.0 178 70.2
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 1.9e-61 239.6 178 71.3
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.9e-61 239.6 178 68.5
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 2.5e-61 239.2 178 71.3
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.3e-61 238.8 179 68.2
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 4.3e-61 238.4 179 68.2
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 4.3e-61 238.4 179 68.2
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 4.3e-61 238.4 178 69.7
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 7.3e-61 237.7 178 69.1
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 7.3e-61 237.7 178 69.1
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 7.3e-61 237.7 178 69.7
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 7.3e-61 237.7 178 69.1
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 7.3e-61 237.7 178 68.5
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 7.3e-61 237.7 174 71.3
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 1.2e-60 236.9 178 68.0
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.2e-60 236.9 178 75.8
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 1.6e-60 236.5 179 69.3
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.1e-60 236.1 174 71.3
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 2.8e-60 235.7 178 68.5
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 3.6e-60 235.3 178 69.1
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 6.1e-60 234.6 178 67.4
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 6.1e-60 234.6 180 68.3
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 8.0e-60 234.2 178 68.0
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 8.0e-60 234.2 179 66.5
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 8.0e-60 234.2 184 67.4
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 1.4e-59 233.4 178 68.0
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 1.8e-59 233.0 179 68.2
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.3e-59 232.6 173 69.9
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 2.3e-59 232.6 180 68.3
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 3.0e-59 232.3 176 67.0
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 3.0e-59 232.3 184 76.6
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 4.0e-59 231.9 178 68.0
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 5.2e-59 231.5 178 67.4
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 6.8e-59 231.1 181 66.9
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 6.8e-59 231.1 173 69.4
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 1.2e-58 230.3 181 68.0
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 2.0e-58 229.6 176 65.9
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 2.0e-58 229.6 188 70.7
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 2.0e-58 229.6 188 72.3
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 4.4e-58 228.4 178 71.3
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 5.7e-58 228.0 178 79.2
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 5.7e-58 228.0 188 67.6
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 7.5e-58 227.6 178 67.4
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 9.8e-58 227.3 183 74.9
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 2.2e-57 226.1 180 79.4
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 6.4e-57 224.6 179 62.6
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 6.4e-57 224.6 174 71.3
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 8.3e-57 224.2 181 69.6
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.1e-56 223.8 165 71.5
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.4e-56 223.4 191 73.3
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.4e-56 223.4 178 76.4
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.8e-56 223.0 179 62.6
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.8e-56 223.0 179 62.6
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 1.8e-56 223.0 173 80.3
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 3.2e-56 222.2 178 62.9
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 1.2e-55 220.3 182 65.4
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 1.6e-55 219.9 178 62.9
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 1.6e-55 219.9 180 72.2
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 2.0e-55 219.5 178 66.9
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 7.8e-55 217.6 187 61.5
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 7.8e-55 217.6 187 61.5
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 1.0e-54 217.2 190 60.5
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 1.0e-54 217.2 190 61.6
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 1.7e-54 216.5 186 73.1
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.7e-54 216.5 176 70.5
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.7e-54 216.5 176 70.5
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 3.0e-54 215.7 183 62.3
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 1.9e-53 213.0 186 60.2
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 4.3e-53 211.8 177 69.5
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 7.3e-53 211.1 194 58.2
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 1.2e-52 210.3 184 59.8
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 6.2e-52 208.0 192 58.9
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 2.3e-51 206.1 184 58.7
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 5.2e-51 204.9 184 60.9
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 5.2e-51 204.9 184 61.4
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 5.2e-51 204.9 184 60.9
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 5.2e-51 204.9 184 60.9
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 5.2e-51 204.9 184 58.7
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 8.9e-51 204.1 190 60.5
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 1.5e-50 203.4 184 59.8
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 2.6e-50 202.6 189 58.2
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 2.7e-47 192.6 179 54.7
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 1.1e-45 187.2 178 55.1
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 1.1e-43 180.6 180 53.3
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 6.8e-43 177.9 180 52.2
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 7.5e-42 174.5 175 54.9
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.4e-40 169.5 96 80.2
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 9.2e-40 167.5 184 50.0
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 6.6e-38 161.4 175 57.1
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 1.2e-36 157.1 163 63.8
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 1.6e-36 156.8 111 65.8
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 2.8e-36 156.0 88 81.8
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 1.0e-22 110.9 65 78.5
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 1.7e-22 110.2 66 77.3
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 1.4e-16 90.5 110 42.7
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 2.4e-16 89.7 102 46.1
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 4.2e-16 89.0 147 45.6
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 3.0e-14 82.8 66 71.2
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 2.5e-13 79.7 104 48.1
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 8.1e-12 74.7 98 46.9
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 2.0e-10 70.1 92 60.9
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 2.6e-10 69.7 104 45.2
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 2.7e-07 59.7 36 75.0
MCO16G044 Micromonas commoda HOM05D014086 ORTHO05D006295 6.7e-06 55.1 116 35.3


User provided reference genes

Program Settings