Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc8.286 Carica papaya HOM05D000045 ORTHO05D016900 2.4e-94 349.0 193 100.0
QL04p062155 Quercus lobata HOM05D000045 ORTHO05D000067 2.4e-30 136.3 103 68.9
CiPaw.03G112500 Carya illinoinensis HOM05D000045 ORTHO05D000067 1.9e-27 126.7 103 62.1
Manes.08G069400 Manihot esculenta HOM05D000045 ORTHO05D000067 4.0e-25 119.0 103 63.1
Atru.chr8.1000 Acer truncatum HOM05D000045 ORTHO05D000067 8.9e-25 117.9 103 60.2
Haze_13644 Corylus avellana HOM05D000045 ORTHO05D016900 1.3e-23 114.0 103 59.2
Hma1.2p1_0513F.1_g169670 Hydrangea macrophylla HOM05D000045 ORTHO05D000067 3.7e-23 112.5 103 57.3
TWI60G1075 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 4.1e-22 109.0 147 46.3
Thecc.01G173200 Theobroma cacao HOM05D000045 ORTHO05D000067 7.0e-22 108.2 101 57.4
Dinv11070 Davidia involucrata HOM05D000045 ORTHO05D016900 2.3e-20 103.2 98 57.1
Prupe.3G186000 Prunus persica HOM05D000045 ORTHO05D000067 2.3e-20 103.2 97 56.7
vmacro08758 Vaccinium macrocarpon HOM05D000045 ORTHO05D000067 2.5e-19 99.8 95 57.9
RcHm_v2.0_Chr2g0153551 Rosa chinensis HOM05D000045 ORTHO05D000067 5.6e-19 98.6 164 42.7
CSS0027089 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.1e-18 96.7 94 56.4
Sabra16G0020200 Salix brachista HOM05D000045 ORTHO05D000067 2.8e-18 96.3 124 45.2
Duzib211G0136 Durio zibethinus HOM05D000045 ORTHO05D000067 4.7e-18 95.5 101 53.5
Potri.016G018100 Populus trichocarpa HOM05D000045 ORTHO05D000067 1.1e-17 94.4 124 47.6
Rhsim12G0014800 Rhododendron simsii HOM05D000045 ORTHO05D000067 4.0e-17 92.4 95 53.7
Thhalv10017871m.g Eutrema salsugineum HOM05D000045 ORTHO05D000067 2.0e-16 90.1 101 48.5
Gohir.A07G184300 Gossypium hirsutum HOM05D000045 ORTHO05D000067 1.3e-15 87.4 99 51.5
Gorai.001G213700 Gossypium raimondii HOM05D000045 ORTHO05D000067 1.7e-15 87.0 101 49.5
FvH4_6g39511 Fragaria vesca HOM05D000045 ORTHO05D000067 6.4e-15 85.1 101 48.5
AT2G32250 Arabidopsis thaliana HOM05D000045 ORTHO05D000067 1.9e-14 83.6 101 45.5
Sp4g14640 Schrenkiella parvula HOM05D000045 ORTHO05D000067 1.9e-14 83.6 103 45.6
Gohir.D07G191100 Gossypium hirsutum HOM05D000045 ORTHO05D000067 3.2e-14 82.8 101 47.5
Aa31LG5G4280 Aethionema arabicum HOM05D000045 ORTHO05D000067 9.2e-14 81.3 102 48.0
Dinv09069 Davidia involucrata HOM05D000045 ORTHO05D022284 1.6e-13 80.5 98 48.0
Sabra06G0014200 Salix brachista HOM05D000045 ORTHO05D000067 6.0e-13 78.6 94 45.7
MD17G1129000 Malus domestica HOM05D000045 ORTHO05D000067 1.0e-12 77.8 91 49.5
AL4G27620 Arabidopsis lyrata HOM05D000045 ORTHO05D000067 1.7e-12 77.0 101 42.6
Potri.006G020700 Populus trichocarpa HOM05D000045 ORTHO05D000067 3.0e-12 76.3 94 44.7
MD09G1139500 Malus domestica HOM05D000045 ORTHO05D000067 5.1e-12 75.5 157 37.6
Potri.003G110300 Populus trichocarpa HOM05D000045 ORTHO05D000067 6.6e-12 75.1 96 41.7
Actinidia32068 Actinidia chinensis HOM05D000045 ORTHO05D000067 1.1e-11 74.3 121 39.7
GSVIVG01015829001 Vitis vinifera HOM05D000045 ORTHO05D000067 1.1e-11 74.3 99 45.5
Glyma.06G002400 Glycine max HOM05D000045 ORTHO05D000067 2.5e-11 73.2 103 43.7
Rhsim12G0014700 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.5e-11 73.2 121 42.1
EL10Ac6g15346 Beta vulgaris HOM05D000045 ORTHO05D000067 4.3e-11 72.4 100 42.0
CARHR126040 Cardamine hirsuta HOM05D000045 ORTHO05D000067 4.3e-11 72.4 101 43.6
Prupe.4G115100 Prunus persica HOM05D000045 ORTHO05D000067 4.3e-11 72.4 96 44.8
Sed0004030 Sechium edule HOM05D000045 ORTHO05D000067 4.3e-11 72.4 108 39.8
Dinv41265 Davidia involucrata HOM05D000045 ORTHO05D000067 5.6e-11 72.0 161 37.3
Hma1.2p1_0312F.1_g121480 Hydrangea macrophylla HOM05D000045 ORTHO05D000067 7.3e-11 71.6 100 44.0
Manes.09G001400 Manihot esculenta HOM05D000045 ORTHO05D000067 7.3e-11 71.6 93 44.1
C04p17370 Brassica napus HOM05D000045 ORTHO05D000067 9.5e-11 71.2 104 45.2
BolC4t23288H Brassica oleracea HOM05D000045 ORTHO05D000067 9.5e-11 71.2 104 45.2
COL.COLO4_33763 Corchorus olitorius HOM05D000045 ORTHO05D000067 9.5e-11 71.2 99 42.4
CiPaw.03G112700 Carya illinoinensis HOM05D000045 ORTHO05D000067 1.2e-10 70.9 124 38.7
Potri.016G018300 Populus trichocarpa HOM05D000045 ORTHO05D000067 1.2e-10 70.9 94 41.5
Thecc.01G173100 Theobroma cacao HOM05D000045 ORTHO05D000067 1.2e-10 70.9 124 38.7
ClCG07G010950 Citrullus lanatus HOM05D000045 ORTHO05D000067 1.6e-10 70.5 109 43.1
CsaV3_4G007320 Cucumis sativus L. HOM05D000045 ORTHO05D000067 1.6e-10 70.5 108 40.7
Nn7g38205 Nelumbo nucifera HOM05D000045 ORTHO05D000067 2.1e-10 70.1 111 39.6
TWI38G1541 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 2.1e-10 70.1 155 35.5
Atru.chr8.996 Acer truncatum HOM05D000045 ORTHO05D000067 2.8e-10 69.7 94 42.6
Sabra03G0076500 Salix brachista HOM05D000045 ORTHO05D000067 3.6e-10 69.3 96 42.7
Sabra16G0020300 Salix brachista HOM05D000045 ORTHO05D000067 4.7e-10 68.9 94 40.4
QL11p013583 Quercus lobata HOM05D000045 ORTHO05D000067 6.2e-10 68.6 99 39.4
TWI32G0060 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 6.2e-10 68.6 99 44.4
vmacro08757 Vaccinium macrocarpon HOM05D000045 ORTHO05D028555 6.2e-10 68.6 99 41.4
CSS0046253 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 8.1e-10 68.2 99 40.4
MELO3C032585.2 Cucumis melo HOM05D000045 ORTHO05D000067 1.1e-09 67.8 90 46.7
Cpa.g.sc8.288 Carica papaya HOM05D000045 ORTHO05D000067 2.3e-09 66.6 90 43.3
TAR624G1219 Trochodendron aralioides HOM05D000045 ORTHO05D022284 2.3e-09 66.6 89 47.2
BraA05t20244Z Brassica rapa HOM05D000045 ORTHO05D000067 4.0e-09 65.9 104 43.3
AUR62017848 Chenopodium quinoa HOM05D000045 ORTHO05D000067 4.0e-09 65.9 100 38.0
Dinv11071 Davidia involucrata HOM05D000045 ORTHO05D000067 4.0e-09 65.9 92 40.2
Glyma.06G314300 Glycine max HOM05D000045 ORTHO05D000067 4.0e-09 65.9 98 41.8
Lj2C422T1 Lonicera japonica HOM05D000045 ORTHO05D000067 4.0e-09 65.9 95 42.1
QL04p062085 Quercus lobata HOM05D000045 ORTHO05D000067 4.0e-09 65.9 90 42.2
CSS0032797 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 5.2e-09 65.5 100 41.0
AUR62020476 Chenopodium quinoa HOM05D000045 ORTHO05D000067 5.2e-09 65.5 124 37.9
Haze_06106 Corylus avellana HOM05D035974 ORTHO05D022284 5.2e-09 65.5 156 30.1
Prupe.3G186200 Prunus persica HOM05D000045 ORTHO05D000067 5.2e-09 65.5 127 39.4
Ah.03g147610 Amaranthus hybridus HOM05D000045 ORTHO05D000067 6.8e-09 65.1 95 41.1
CiPaw.10G062900 Carya illinoinensis HOM05D000045 ORTHO05D000067 6.8e-09 65.1 96 41.7
AUR62003534 Chenopodium quinoa HOM05D000045 ORTHO05D000067 6.8e-09 65.1 100 38.0
Hma1.2p1_0640F.1_g194130 Hydrangea macrophylla HOM05D000045 ORTHO05D000067 1.2e-08 64.3 100 42.0
RcHm_v2.0_Chr5g0020601 Rosa chinensis HOM05D000045 ORTHO05D000067 1.2e-08 64.3 98 38.8
AUR62015734 Chenopodium quinoa HOM05D000045 ORTHO05D000067 1.5e-08 63.9 123 37.4
Migut.J00594 Erythranthe guttata HOM05D000045 ORTHO05D000067 1.5e-08 63.9 98 38.8
Gohir.A11G155900 Gossypium hirsutum HOM05D000045 ORTHO05D000067 1.5e-08 63.9 97 41.2
Gohir.D11G162800 Gossypium hirsutum HOM05D000045 ORTHO05D000067 1.5e-08 63.9 97 41.2
Gorai.007G173400 Gossypium raimondii HOM05D000045 ORTHO05D000067 1.5e-08 63.9 97 41.2
MD05G1249100 Malus domestica HOM05D000045 ORTHO05D000067 2.0e-08 63.5 98 36.7
RcHm_v2.0_Chr2g0153571 Rosa chinensis HOM05D000045 ORTHO05D000067 2.0e-08 63.5 91 45.1
TPR.G5129 Trifolium pratense HOM05D000045 ORTHO05D000067 2.0e-08 63.5 98 39.8
FvH4_6g39513 Fragaria vesca HOM05D000045 ORTHO05D000067 2.6e-08 63.2 91 45.1
CANSAT01G1690 Cannabis sativa HOM05D000045 ORTHO05D000067 3.4e-08 62.8 99 38.4
VMungo1309G1087 Vigna mungo HOM05D000045 ORTHO05D000067 3.4e-08 62.8 103 37.9
A05p13040 Brassica napus HOM05D000045 ORTHO05D000067 4.4e-08 62.4 104 42.3
CiPaw.04G072900 Carya illinoinensis HOM05D000045 ORTHO05D000067 4.4e-08 62.4 92 41.3
Potri.006G020600 Populus trichocarpa HOM05D000045 ORTHO05D000067 7.6e-08 61.6 98 41.8
Atru.chr8.997 Acer truncatum HOM05D000045 ORTHO05D000067 1.3e-07 60.8 99 38.4
QL04p062123 Quercus lobata HOM05D000045 ORTHO05D000067 1.3e-07 60.8 99 38.4
RcHm_v2.0_Chr2g0153561 Rosa chinensis HOM05D000045 ORTHO05D000067 1.3e-07 60.8 101 35.6
MD17G1129100 Malus domestica HOM05D000045 ORTHO05D000067 1.7e-07 60.5 119 40.3
Manes.03G074400 Manihot esculenta HOM05D000045 ORTHO05D000067 1.7e-07 60.5 98 34.7
Nitab4.5_0008117g0040 Nicotiana tabacum HOM05D000045 ORTHO05D000067 1.7e-07 60.5 99 37.4
FvH4_3g12634 Fragaria vesca HOM05D000045 ORTHO05D000067 2.2e-07 60.1 98 35.7
Glyma.04G124300 Glycine max HOM05D000045 ORTHO05D000067 2.2e-07 60.1 99 41.4
CARHR098060 Cardamine hirsuta HOM05D000045 ORTHO05D000067 2.9e-07 59.7 98 34.7
Nitab4.5_0006510g0030 Nicotiana tabacum HOM05D000045 ORTHO05D000067 2.9e-07 59.7 99 36.4
Solyc08g060840.1 Solanum lycopersicum HOM05D000045 ORTHO05D000067 2.9e-07 59.7 99 36.4
Nitab4.5_0002232g0080 Nicotiana tabacum HOM05D000045 ORTHO05D000067 3.7e-07 59.3 102 32.4
Sopen08g015980 Solanum pennellii HOM05D000045 ORTHO05D000067 3.7e-07 59.3 99 36.4
THA.LOC104808512 Tarenaya hassleriana HOM05D000045 ORTHO05D000067 3.7e-07 59.3 99 34.3
Atru.chr10.435 Acer truncatum HOM05D000045 ORTHO05D000067 4.9e-07 58.9 100 38.0
CiPaw.03G112600 Carya illinoinensis HOM05D000045 ORTHO05D000067 4.9e-07 58.9 152 30.3
Thhalv10020053m.g Eutrema salsugineum HOM05D000045 ORTHO05D000067 4.9e-07 58.9 129 32.6
CAN.G543.2 Capsicum annuum HOM05D000045 ORTHO05D000067 6.4e-07 58.5 99 37.4
Nitab4.5_0000170g0420 Nicotiana tabacum HOM05D000045 ORTHO05D000067 6.4e-07 58.5 102 32.4
Lsat_1_v5_gn_4_9780 Lactuca sativa HOM05D000045 ORTHO05D000067 8.4e-07 58.2 99 37.4
Phvul.005G011700 Phaseolus vulgaris HOM05D000045 ORTHO05D000067 8.4e-07 58.2 93 41.9
Prupe.3G186100 Prunus persica HOM05D000045 ORTHO05D000067 8.4e-07 58.2 99 35.4
Rhsim04G0084400 Rhododendron simsii HOM05D000045 ORTHO05D000067 8.4e-07 58.2 108 38.0
HanXRQChr16g0515281 Helianthus annuus HOM05D000045 ORTHO05D000067 1.1e-06 57.8 90 37.8
PGR031G0630 Punica granatum HOM05D000045 ORTHO05D000067 1.1e-06 57.8 88 42.0
AL7G40630 Arabidopsis lyrata HOM05D000045 ORTHO05D000067 1.4e-06 57.4 116 31.0
arahy.Tifrunner.gnm1.ann1.KBR22V Arachis hypogaea HOM05D000045 ORTHO05D000067 1.4e-06 57.4 148 33.1
arahy.Tifrunner.gnm1.ann1.QW5BDX Arachis hypogaea HOM05D000045 ORTHO05D000067 1.4e-06 57.4 148 33.1
Eucgr.A00908 Eucalyptus grandis HOM05D000045 ORTHO05D000067 1.4e-06 57.4 97 38.1
AL3G36380 Arabidopsis lyrata HOM05D000045 ORTHO05D000067 1.9e-06 57.0 98 32.7
HanXRQChr12g0380771 Helianthus annuus HOM05D000045 ORTHO05D000067 1.9e-06 57.0 99 37.4
MD09G1139600 Malus domestica HOM05D000045 ORTHO05D000067 1.9e-06 57.0 99 33.3
AT4G15090 Arabidopsis thaliana HOM05D000045 ORTHO05D000067 2.4e-06 56.6 120 30.8
CsaV3_4G007310 Cucumis sativus L. HOM05D000045 ORTHO05D000067 2.4e-06 56.6 99 37.4
Sp3g19980 Schrenkiella parvula HOM05D000045 ORTHO05D000067 2.4e-06 56.6 93 35.5
THA.LOC104808511 Tarenaya hassleriana HOM05D000045 ORTHO05D000067 2.4e-06 56.6 117 34.2
VMungo1080G1383 Vigna mungo HOM05D000045 ORTHO05D000067 2.4e-06 56.6 94 44.7
A05p26650 Brassica napus HOM05D000045 ORTHO05D000067 3.2e-06 56.2 97 37.1
C05p41240 Brassica napus HOM05D000045 ORTHO05D000067 3.2e-06 56.2 97 37.1
BolC5t32866H Brassica oleracea HOM05D000045 ORTHO05D000067 3.2e-06 56.2 97 37.1
BraA05t21541Z Brassica rapa HOM05D000045 ORTHO05D000067 3.2e-06 56.2 97 37.1
Eucgr.C04090 Eucalyptus grandis HOM05D000045 ORTHO05D000067 3.2e-06 56.2 99 37.4
Peaxi162Scf00189g00318 Petunia axillaris HOM05D000045 ORTHO05D000067 3.2e-06 56.2 99 35.4
PGR031G2293 Punica granatum HOM05D000045 ORTHO05D000067 3.2e-06 56.2 99 35.4
CARHR221820 Cardamine hirsuta HOM05D000045 ORTHO05D000067 4.1e-06 55.8 117 29.1
Lj3g0006959 Lotus japonicus HOM05D000045 ORTHO05D000067 4.1e-06 55.8 99 38.4
Phvul.007G043200 Phaseolus vulgaris HOM05D000045 ORTHO05D000067 4.1e-06 55.8 127 34.6
Psat6g216200 Pisum sativum HOM05D000045 ORTHO05D000067 4.1e-06 55.8 102 35.3
Sopen07g022840 Solanum pennellii HOM05D000045 ORTHO05D000067 4.1e-06 55.8 101 32.7
Eucgr.A00910 Eucalyptus grandis HOM05D000045 ORTHO05D000067 5.4e-06 55.5 102 42.2
TWI15G1179 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 5.4e-06 55.5 96 36.5
C01p42080 Brassica napus HOM05D000045 ORTHO05D000067 7.1e-06 55.1 101 34.7
BraA01t03418Z Brassica rapa HOM05D000045 ORTHO05D000067 9.2e-06 54.7 101 34.7
FvH4_6g39512 Fragaria vesca HOM05D000045 ORTHO05D000067 9.2e-06 54.7 101 31.7


User provided reference genes

Program Settings