Gene: Sopen08g015980
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen08g015980
- Transcript Identifier Sopen08g015980.2
- Gene Type Coding gene
- Location Spenn-ch08 : 48244713-48247865 : negative
Gene Family Information
- ID HOM05D000045
- #Genes/#Species 4772/90
- Phylogenetic origin
- ID ORTHO05D000067
- #Genes/#Species 2550/87
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen08g015980.2
Descriptions
- Description Encodes a nuclear localized protein involved in far red light response signaling. Loss of function mutants are defective in far red light responses. Interacts with homologous gene FHY3. | FAR-RED IMPAIRED RESPONSE 1 (FAR1) | CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain , Zinc finger, PMZ-type , Transcription factor, FAR1-related , Zinc finger, SWIM-type | BEST Arabidopsis thaliana protein match is: far-red elongated hypocotyls 3
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0009639 | ISO | PLAZA Integrative Orthology | response to red or far red light | AT4G15090 |
| GO:0010218 | ISO | PLAZA Integrative Orthology | response to far red light | AT4G15090 |
| GO:0045893 | ISO | PLAZA Integrative Orthology | positive regulation of transcription, DNA-templated | AT4G15090 |
| GO:1900056 | ISO | PLAZA Integrative Orthology | negative regulation of leaf senescence | AT4G15090 |
| GO:0010017 | ISO | PLAZA Integrative Orthology | red or far-red light signaling pathway | AT4G15090 |
| GO:0010018 | ISO | PLAZA Integrative Orthology | far-red light signaling pathway | AT4G15090 |
| GO:0042753 | ISO | PLAZA Integrative Orthology | positive regulation of circadian rhythm | AT4G15090 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0003700 | ISO | PLAZA Integrative Orthology | DNA-binding transcription factor activity | AT4G15090 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G15090 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT4G15090 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |