Gene: AT4G15090
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G15090
- Transcript Identifier AT4G15090.2
- Gene Type Coding gene
- Location Chr4 : 8614806-8617870 : positive
Gene Family Information
- ID HOM05D000045
- #Genes/#Species 4772/90
- Phylogenetic origin
- ID ORTHO05D000067
- #Genes/#Species 2550/87
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G15090.2
- symbol FAR1
- full_name FAR-RED IMPAIRED RESPONSE 1
- uniprot Q9SWG3
Descriptions
- Description FRS (FAR1 Related Sequences) transcription factor family
- Computational description FAR-RED IMPAIRED RESPONSE 1 (FAR1); CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, PMZ-type (InterPro:IPR006564), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: far-red elongated hypocotyls 3 (TAIR:AT3G22170.2); Has 1639 Blast hits to 1460 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 107; Plants - 1519; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010218 | IMP | Gene Ontology | response to far red light | 1 |
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:1900056 | IMP | Gene Ontology | negative regulation of leaf senescence | 2 |
| GO:0042753 | IMP | Gene Ontology | positive regulation of circadian rhythm | 3 |
| GO:0045893 | IDA | Gene Ontology | positive regulation of transcription, DNA-templated | 1 |
| GO:0010018 | IMP | Gene Ontology | far-red light signaling pathway | 4 |
| GO:0010017 | IMP | Gene Ontology | red or far-red light signaling pathway | 4 |
| GO:0009639 | IMP | Gene Ontology | response to red or far red light | 4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008270 | IEA | Gene Ontology | zinc ion binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0003700 | IDA | Gene Ontology | DNA-binding transcription factor activity | 5 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 6 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 4 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |