Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc79.52 Carica papaya HOM05D003188 ORTHO05D003602 1.2e-74 283.5 186 100.0
Cpa.g.sc13.60 Carica papaya HOM05D003188 ORTHO05D003602 3.4e-58 228.8 178 76.4
Thecc.01G174500 Theobroma cacao HOM05D003188 ORTHO05D003602 1.6e-39 166.8 178 59.6
TWI15G1168 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 5.2e-38 161.8 178 57.3
Dinv36901 Davidia involucrata HOM05D003188 ORTHO05D003602 2.0e-37 159.8 168 59.5
Ciclev10019993m.g Citrus clementina HOM05D003188 ORTHO05D003602 3.3e-37 159.1 178 69.1
Duzib133G0881 Durio zibethinus HOM05D003188 ORTHO05D003602 3.3e-37 159.1 178 58.4
Haze_18599 Corylus avellana HOM05D003188 ORTHO05D003602 1.3e-36 157.1 179 56.4
Gorai.007G172700 Gossypium raimondii HOM05D003188 ORTHO05D003602 2.8e-36 156.0 177 72.3
Cfa016042 Carpinus fangiana HOM05D003188 ORTHO05D003602 3.7e-36 155.6 179 54.7
COL.COLO4_19984 Corchorus olitorius HOM05D003188 ORTHO05D003602 4.8e-36 155.2 174 64.9
Gohir.A11G155400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 6.3e-36 154.8 177 72.3
Gohir.D11G162400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 8.3e-36 154.5 177 71.8
Potri.010G102000 Populus trichocarpa HOM05D003188 ORTHO05D003602 1.1e-35 154.1 176 55.7
TWI81G0274 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 9.1e-35 151.0 178 53.4
Manes.01G020800 Manihot esculenta HOM05D003188 ORTHO05D003602 7.7e-34 147.9 178 54.5
ClCG06G015050 Citrullus lanatus HOM05D003188 ORTHO05D003602 2.2e-33 146.4 162 65.4
Duzib138G0729 Durio zibethinus HOM05D003188 ORTHO05D003602 5.0e-33 145.2 176 54.0
Actinidia30194 Actinidia chinensis HOM05D003188 ORTHO05D003602 8.5e-33 144.4 176 50.0
PGR083G2637 Punica granatum HOM05D003188 ORTHO05D003602 1.1e-32 144.1 168 61.9
Manes.12G158000 Manihot esculenta HOM05D003188 ORTHO05D003602 1.9e-32 143.3 161 55.3
CsaV3_1G003600 Cucumis sativus L. HOM05D003188 ORTHO05D003602 2.7e-31 139.4 165 52.1
Gorai.001G093700 Gossypium raimondii HOM05D003188 ORTHO05D003602 2.7e-31 139.4 180 60.0
GSVIVG01029101001 Vitis vinifera HOM05D003188 ORTHO05D003602 3.6e-31 139.0 179 64.8
Atru.chr12.1495 Acer truncatum HOM05D003188 ORTHO05D003602 4.7e-31 138.7 165 55.2
Eucgr.B00695 Eucalyptus grandis HOM05D003188 ORTHO05D003602 8.0e-31 137.9 180 54.4
Prupe.5G216800 Prunus persica HOM05D003188 ORTHO05D003602 8.0e-31 137.9 165 55.8
Gohir.D07G087600 Gossypium hirsutum HOM05D003188 ORTHO05D003602 5.2e-30 135.2 180 59.4
TAR371G0535 Trochodendron aralioides HOM05D003188 ORTHO05D003602 8.8e-30 134.4 182 47.3
Sabra10G0074600 Salix brachista HOM05D003188 ORTHO05D003602 2.0e-29 133.3 176 67.6
Glyma.17G121700 Glycine max HOM05D003188 ORTHO05D003602 2.6e-29 132.9 162 53.1
Atru.chr2.2945 Acer truncatum HOM05D003188 ORTHO05D003602 4.4e-29 132.1 165 60.6
MD06G1210700 Malus domestica HOM05D003188 ORTHO05D003602 4.4e-29 132.1 177 50.3
Nn3g17701 Nelumbo nucifera HOM05D003188 ORTHO05D003602 7.5e-29 131.3 178 48.9
Nitab4.5_0000410g0090 Nicotiana tabacum HOM05D003188 ORTHO05D003602 7.5e-29 131.3 163 45.4
Potri.015G051000 Populus trichocarpa HOM05D003188 ORTHO05D003602 1.3e-28 130.6 168 60.1
RcHm_v2.0_Chr7g0184541 Rosa chinensis HOM05D003188 ORTHO05D003602 2.2e-28 129.8 177 45.8
Atru.chr3.1254 Acer truncatum HOM05D003188 ORTHO05D003602 4.8e-28 128.6 198 49.5
MELO3C017285.2 Cucumis melo HOM05D003188 ORTHO05D003602 4.8e-28 128.6 165 49.1
QL10p022977 Quercus lobata HOM05D003188 ORTHO05D003602 1.1e-27 127.5 147 53.1
PGSC0003DMG400005704 Solanum tuberosum HOM05D003188 ORTHO05D003602 1.1e-27 127.5 166 47.0
CiPaw.12G051000 Carya illinoinensis HOM05D003188 ORTHO05D003602 1.4e-27 127.1 161 56.5
DCAR_015131 Daucus carota HOM05D003188 ORTHO05D003602 1.4e-27 127.1 178 46.1
Sed0010135 Sechium edule HOM05D003188 ORTHO05D003602 1.8e-27 126.7 163 63.8
FvH4_5g12750 Fragaria vesca HOM05D003188 ORTHO05D003602 2.4e-27 126.3 174 45.4
FAN18G0006 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.4e-27 126.3 174 45.4
Sopen03g038640 Solanum pennellii HOM05D003188 ORTHO05D003602 2.4e-27 126.3 166 47.6
MD14G1221400 Malus domestica HOM05D003188 ORTHO05D003602 4.1e-27 125.6 177 55.9
Solyc03g119790.3 Solanum lycopersicum HOM05D003188 ORTHO05D003602 4.1e-27 125.6 164 47.6
CANSAT64G2546 Cannabis sativa HOM05D003188 ORTHO05D003602 7.0e-27 124.8 167 51.5
Cc04_g07560 Coffea canephora HOM05D003188 ORTHO05D003602 9.1e-27 124.4 169 45.6
Phvul.003G177500 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 9.1e-27 124.4 162 48.8
TAR629G2124 Trochodendron aralioides HOM05D003188 ORTHO05D003602 2.0e-26 123.2 180 45.6
Glyma.04G146000 Glycine max HOM05D003188 ORTHO05D003602 2.7e-26 122.9 179 49.2
Dinv38591 Davidia involucrata HOM05D003188 ORTHO05D003602 5.9e-26 121.7 176 48.9
Nitab4.5_0003716g0120 Nicotiana tabacum HOM05D003188 ORTHO05D003602 7.7e-26 121.3 163 44.8
FAN08G1208 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.0e-25 120.9 174 43.1
Lj5A144T29 Lonicera japonica HOM05D003188 ORTHO05D003602 1.3e-25 120.6 176 60.2
Hund13349 Selenicereus undatus HOM05D003188 ORTHO05D003602 1.3e-25 120.6 161 53.4
CAN.G438.112 Capsicum annuum HOM05D003188 ORTHO05D003602 1.7e-25 120.2 168 45.2
THA.LOC104803141 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 1.7e-25 120.2 161 51.6
THA.LOC104811602 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 1.7e-25 120.2 175 49.7
Phvul.009G200700 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 2.3e-25 119.8 182 47.8
Oeu058326.2 Olea europaea HOM05D003188 ORTHO05D003602 2.9e-25 119.4 178 43.8
Rhsim09G0110400 Rhododendron simsii HOM05D003188 ORTHO05D003602 3.8e-25 119.0 151 46.4
SGA_v2.0_scaffold159G37605 Striga asiatica HOM05D003188 ORTHO05D003602 1.1e-24 117.5 177 42.4
Glyma.06G210400 Glycine max HOM05D003188 ORTHO05D003602 4.2e-24 115.5 179 47.5
Glyma.05G013500 Glycine max HOM05D003188 ORTHO05D003602 5.5e-24 115.2 163 49.1
TPR.G26763 Trifolium pratense HOM05D003188 ORTHO05D003602 5.5e-24 115.2 169 48.5
SGA_v2.0_scaffold34G13894 Striga asiatica HOM05D003188 ORTHO05D003602 9.5e-24 114.4 183 53.6
VMungo1309G2361 Vigna mungo HOM05D003188 ORTHO05D003602 9.5e-24 114.4 183 45.4
Medtr8g077000 Medicago truncatula HOM05D003188 ORTHO05D003602 1.2e-23 114.0 179 48.0
Gohir.A07G084627 Gossypium hirsutum HOM05D003188 ORTHO05D003602 6.1e-23 111.7 174 47.1
Psat4g043680 Pisum sativum HOM05D003188 ORTHO05D003602 8.0e-23 111.3 168 48.2
Aqoxy3G03899 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 1.0e-22 110.9 180 43.9
Ah.16g101610 Amaranthus hybridus HOM05D003188 ORTHO05D003602 1.8e-22 110.2 178 41.6
Lalb_Chr12g0197111 Lupinus albus HOM05D003188 ORTHO05D003602 2.3e-22 109.8 182 44.5
Aqoxy5G00582 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 3.0e-22 109.4 180 49.4
Carub.0007s2083 Capsella rubella HOM05D003188 ORTHO05D003602 3.0e-22 109.4 177 48.0
SalBow7G4400 Salvia bowleyana HOM05D003188 ORTHO05D003602 3.0e-22 109.4 177 45.8
Lalb_Chr12g0197531 Lupinus albus HOM05D003188 ORTHO05D003602 5.2e-22 108.6 171 45.6
Peaxi162Scf00015g00637 Petunia axillaris HOM05D003188 ORTHO05D003602 8.9e-22 107.8 142 43.0
arahy.Tifrunner.gnm1.ann1.36CJM4 Arachis hypogaea HOM05D003188 ORTHO05D003602 2.0e-21 106.7 179 42.5
Carub.0001s0239 Capsella rubella HOM05D003188 ORTHO05D003602 2.6e-21 106.3 171 46.8
DCAR_011343 Daucus carota HOM05D003188 ORTHO05D003602 2.6e-21 106.3 178 41.6
Lj4g0026321 Lotus japonicus HOM05D003188 ORTHO05D003602 3.4e-21 105.9 169 54.4
MSTRG.14163 Avicennia marina HOM05D003188 ORTHO05D003602 9.8e-21 104.4 177 42.4
AUR62009031 Chenopodium quinoa HOM05D003188 ORTHO05D003602 2.2e-20 103.2 179 41.9
arahy.Tifrunner.gnm1.ann1.MGXB0Y Arachis hypogaea HOM05D003188 ORTHO05D003602 3.7e-20 102.4 174 44.8
Ca_02535_v3 Cicer arietinum L. HOM05D003188 ORTHO05D003602 6.3e-20 101.7 165 44.2
Lj1g0006529 Lotus japonicus HOM05D003188 ORTHO05D003602 6.3e-20 101.7 169 46.2
vmacro10787 Vaccinium macrocarpon HOM05D003188 ORTHO05D003602 1.1e-19 100.9 158 41.8
ATR0787G140 Amborella trichopoda HOM05D003188 ORTHO05D003602 1.8e-19 100.1 181 45.3
Thhalv10023437m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 1.8e-19 100.1 157 47.8
AUR62023272 Chenopodium quinoa HOM05D003188 ORTHO05D003602 2.4e-19 99.8 179 41.3
Aqoxy3G00385 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 3.1e-19 99.4 181 41.4
PSO017G4721 Papaver somniferum HOM05D003188 ORTHO05D003602 4.1e-19 99.0 170 42.9
VMungo1215G2257 Vigna mungo HOM05D003188 ORTHO05D003602 5.4e-19 98.6 155 42.6
CSS0046008 Camellia sinensis var. sinensis HOM05D003188 ORTHO05D003602 1.2e-18 97.4 72 72.2
Migut.H01201 Erythranthe guttata HOM05D003188 ORTHO05D003602 1.2e-18 97.4 168 41.7
Actinidia37847 Actinidia chinensis HOM05D003188 ORTHO05D003602 2.0e-18 96.7 180 40.6
PSO478G1890 Papaver somniferum HOM05D003188 ORTHO05D003602 2.0e-18 96.7 170 42.9
Lj9A216T28 Lonicera japonica HOM05D003188 ORTHO05D003602 3.5e-18 95.9 175 50.3
EL10Ac2g04540 Beta vulgaris HOM05D003188 ORTHO05D003602 4.5e-18 95.5 179 40.2
CARHR002580 Cardamine hirsuta HOM05D003188 ORTHO05D003602 4.5e-18 95.5 156 47.4
CiPaw.09G173500 Carya illinoinensis HOM05D003188 ORTHO05D003602 5.9e-18 95.1 131 49.6
Sc02g0004270 Simmondsia chinensis HOM05D003188 ORTHO05D003602 5.9e-18 95.1 177 44.6
Lj9C432G3 Lonicera japonica HOM05D003188 ORTHO05D003602 2.9e-17 92.8 67 67.2
Os08g0343300 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 5.0e-17 92.0 179 42.5
SEGI_20097 Sequoiadendron giganteum HOM05D003188 ORTHO05D003602 6.6e-17 91.7 156 44.2
HanXRQChr02g0055261 Helianthus annuus HOM05D003188 ORTHO05D003602 1.5e-16 90.5 180 40.0
Thhalv10025149m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 2.5e-16 89.7 159 42.8
Oeu050638.1 Olea europaea HOM05D003188 ORTHO05D003602 2.5e-16 89.7 221 39.8
HPP92_009419 Vanilla planifolia HOM05D003188 ORTHO05D003602 2.5e-16 89.7 171 48.0
AT4G20340 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 3.3e-16 89.4 159 44.7
CDE05G2945 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 4.3e-16 89.0 185 43.8
Hund05006 Selenicereus undatus HOM05D003188 ORTHO05D003602 4.3e-16 89.0 161 38.5
arahy.Tifrunner.gnm1.ann1.8N8EX2 Arachis hypogaea HOM05D003188 ORTHO05D003602 7.3e-16 88.2 174 44.3
MSTRG.6539 Avicennia marina HOM05D003188 ORTHO05D003602 9.5e-16 87.8 179 39.1
CDE05G1652 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 9.5e-16 87.8 184 41.3
AL7G33550 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 2.8e-15 86.3 157 43.9
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 6.1e-15 85.1 165 52.7
Lj2g0027481 Lotus japonicus HOM05D003188 ORTHO05D003602 8.0e-15 84.7 154 51.3
CARHR227350 Cardamine hirsuta HOM05D003188 ORTHO05D003602 1.8e-14 83.6 137 42.3
ECA234G2517 Erigeron canadensis HOM05D003188 ORTHO05D003602 3.1e-14 82.8 165 33.9
Zm00001eb028110 Zea mays HOM05D003188 ORTHO05D003602 4.0e-14 82.4 173 41.0
arahy.Tifrunner.gnm1.ann1.73QXIF Arachis hypogaea HOM05D003188 ORTHO05D003602 5.2e-14 82.0 174 47.7
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 1.2e-13 80.9 162 51.9
Sp1g02280 Schrenkiella parvula HOM05D003188 ORTHO05D003602 1.2e-13 80.9 127 44.9
AL1G12780 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 1.5e-13 80.5 158 43.0
Zm00001eb223630 Zea mays HOM05D003188 ORTHO05D003602 5.8e-13 78.6 180 32.8
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 9.8e-13 77.8 164 48.2
AT1G03280 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 2.2e-12 76.6 124 45.2
Carub.0007s2063 Capsella rubella HOM05D003188 ORTHO05D003602 6.4e-12 75.1 138 39.1
CDE05G0152 Ceratophyllum demersum HOM05D002339 ORTHO05D002545 1.1e-11 74.3 74 54.1
Mapoly0046s0071 Marchantia polymorpha HOM05D003188 ORTHO05D003602 1.2e-10 70.9 154 37.0
BcaC05g24548 Brassica carinata HOM05D003188 ORTHO05D003602 3.5e-10 69.3 158 47.5
BraA10t42457Z Brassica rapa HOM05D003188 ORTHO05D000504 7.8e-10 68.2 126 48.4
Aa31LG1G9260 Aethionema arabicum HOM05D003188 ORTHO05D003602 2.3e-09 66.6 168 44.0
Migut.M00376 Erythranthe guttata HOM05D003188 ORTHO05D003602 2.3e-09 66.6 167 32.3
Lsat_1_v5_gn_8_11621 Lactuca sativa HOM05D003188 ORTHO05D003602 5.6e-08 62.0 54 63.0
Lsat_1_v5_gn_6_3380 Lactuca sativa HOM05D003188 ORTHO05D003602 1.6e-07 60.5 169 47.3
BcaC09g51427 Brassica carinata HOM05D003188 ORTHO05D003602 2.8e-07 59.7 153 34.6
C01p13220 Brassica napus HOM05D003188 ORTHO05D003602 2.8e-07 59.7 153 34.6
BolC1t01296H Brassica oleracea HOM05D003188 ORTHO05D003602 2.8e-07 59.7 153 34.6
FAN18G2667 Fragaria x ananassa HOM05D003188 ORTHO05D003602 3.6e-07 59.3 139 37.4
SMO196G0219 Selaginella moellendorffii HOM05D003188 ORTHO05D003602 4.7e-07 58.9 156 42.3
BraA01t01064Z Brassica rapa HOM05D003188 ORTHO05D003602 6.2e-07 58.5 140 37.9
RcHm_v2.0_Chr7g0184551 Rosa chinensis HOM05D003188 ORTHO05D003602 6.2e-07 58.5 138 34.8
AT4G20810 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 1.1e-06 57.8 167 31.1
A01p11180 Brassica napus HOM05D003188 ORTHO05D003602 1.1e-06 57.8 140 37.9
Lj4g0000284 Lotus japonicus HOM05D003188 ORTHO05D003602 4.0e-06 55.8 75 49.3


User provided reference genes

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