Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc78.93 Carica papaya HOM05D003889 ORTHO05D004407 0.0e+00 1422.1 731 100.0
Atru.chr7.2295 Acer truncatum HOM05D003889 ORTHO05D004407 4.6e-215 751.9 736 59.8
Ciclev10007228m.g Citrus clementina HOM05D003889 ORTHO05D004407 3.4e-202 709.1 733 56.6
QL12p026194 Quercus lobata HOM05D003889 ORTHO05D004407 3.9e-198 695.7 750 55.7
Haze_21830 Corylus avellana HOM05D003889 ORTHO05D004407 6.9e-195 684.9 737 56.2
Thecc.09G038600 Theobroma cacao HOM05D003889 ORTHO05D004407 8.4e-193 677.9 733 55.7
Manes.03G066340 Manihot esculenta HOM05D003889 ORTHO05D004407 7.1e-192 674.9 737 54.8
Dinv30246 Davidia involucrata HOM05D003889 ORTHO05D004407 1.5e-189 667.2 745 54.4
Duzib150G0348 Durio zibethinus HOM05D003889 ORTHO05D004407 1.6e-188 663.7 735 54.8
Gorai.013G218600 Gossypium raimondii HOM05D003889 ORTHO05D004407 1.6e-188 663.7 739 54.0
CiPaw.07G208100 Carya illinoinensis HOM05D003889 ORTHO05D004407 1.3e-185 654.1 735 55.2
TAR636G2332 Trochodendron aralioides HOM05D003889 ORTHO05D004407 1.4e-184 650.6 764 53.1
Gohir.A13G185900 Gossypium hirsutum HOM05D003889 ORTHO05D004407 1.8e-182 643.7 728 53.6
Lj7C708G10 Lonicera japonica HOM05D003889 ORTHO05D004407 9.7e-181 637.9 739 54.3
Prupe.1G453900 Prunus persica HOM05D003889 ORTHO05D004407 9.7e-181 637.9 724 53.5
TWI34G0995 Tripterygium wilfordii HOM05D003889 ORTHO05D004407 1.0e-177 627.9 730 52.5
Potri.018G036600 Populus trichocarpa HOM05D003889 ORTHO05D004407 1.9e-176 623.6 733 53.1
RcHm_v2.0_Chr6g0305641 Rosa chinensis HOM05D003889 ORTHO05D004407 7.9e-175 618.2 737 52.2
FvH4_2g36240 Fragaria vesca HOM05D003889 ORTHO05D004407 4.1e-171 605.9 744 51.2
Nn8g39185 Nelumbo nucifera HOM05D003889 ORTHO05D004407 5.3e-171 605.5 775 48.8
FAN15G2018 Fragaria x ananassa HOM05D003889 ORTHO05D004407 1.5e-170 604.0 734 51.6
FAN27G2633 Fragaria x ananassa HOM05D003889 ORTHO05D004407 1.5e-170 604.0 749 51.4
THA.LOC104818599 Tarenaya hassleriana HOM05D003889 ORTHO05D004407 5.0e-169 599.0 739 49.8
GSVIVG01035684001 Vitis vinifera HOM05D003889 ORTHO05D004407 1.4e-168 597.4 738 52.0
Actinidia13307 Actinidia chinensis HOM05D003889 ORTHO05D004407 1.2e-167 594.3 736 51.6
Sp7g30460 Schrenkiella parvula HOM05D003889 ORTHO05D004407 3.6e-167 592.8 735 50.6
COL.COLO4_18706 Corchorus olitorius HOM05D003889 ORTHO05D004407 2.6e-165 586.6 611 56.0
CSS0006872 Camellia sinensis var. sinensis HOM05D003889 ORTHO05D004407 4.4e-165 585.9 733 51.3
CARHR240680 Cardamine hirsuta HOM05D003889 ORTHO05D004407 2.8e-164 583.2 739 50.1
PGR044G0516 Punica granatum HOM05D003889 ORTHO05D004407 4.8e-164 582.4 729 49.5
Lj1g0022555 Lotus japonicus HOM05D003889 ORTHO05D004407 1.4e-163 580.9 747 50.5
AT4G32700 Arabidopsis thaliana HOM05D003889 ORTHO05D004407 2.6e-162 576.6 739 49.1
C01p06220 Brassica napus HOM05D003889 ORTHO05D004407 2.6e-162 576.6 744 48.1
AL7G19040 Arabidopsis lyrata HOM05D003889 ORTHO05D004407 1.0e-161 574.7 737 48.7
Carub.0007s0783 Capsella rubella HOM05D003889 ORTHO05D004407 1.0e-161 574.7 739 49.0
Aa31LG2G16920 Aethionema arabicum HOM05D003889 ORTHO05D004407 2.2e-161 573.5 770 48.2
Lalb_Chr24g0402621 Lupinus albus HOM05D003889 ORTHO05D004407 5.0e-161 572.4 740 51.2
A01p05650 Brassica napus HOM05D003889 ORTHO05D004407 1.1e-160 571.2 739 49.5
Aqoxy7G01675 Aquilegia oxysepala HOM05D003889 ORTHO05D004407 1.9e-160 570.5 783 48.0
Nitab4.5_0000250g0220 Nicotiana tabacum HOM05D003889 ORTHO05D004407 2.5e-160 570.1 741 50.1
MD08G1120000 Malus domestica HOM05D003889 ORTHO05D004407 1.4e-158 564.3 693 49.9
Sopen08g021990 Solanum pennellii HOM05D003889 ORTHO05D004407 2.3e-158 563.5 739 50.6
BraA01t00535Z Brassica rapa HOM05D003889 ORTHO05D004407 4.0e-158 562.8 754 48.4
Solyc08g068110.1 Solanum lycopersicum HOM05D003889 ORTHO05D004407 8.8e-158 561.6 738 50.1
BcaC09g52063 Brassica carinata HOM05D003889 ORTHO05D004407 7.5e-157 558.5 745 47.7
Cc08_g08480 Coffea canephora HOM05D003889 ORTHO05D004407 9.7e-157 558.1 748 49.3
Rhsim02G0183600 Rhododendron simsii HOM05D003889 ORTHO05D004407 1.0e-153 548.1 750 48.1
A08p18050 Brassica napus HOM05D003889 ORTHO05D004407 1.7e-153 547.4 737 48.0
Glyma.14G140800 Glycine max HOM05D003889 ORTHO05D004407 1.1e-152 544.7 733 47.7
PSO782G2669 Papaver somniferum HOM05D003889 ORTHO05D004407 2.5e-152 543.5 762 47.8
PSO198G0085 Papaver somniferum HOM05D003889 ORTHO05D004407 5.5e-152 542.3 764 47.6
BcaB03g12757 Brassica carinata HOM05D003889 ORTHO05D004407 4.7e-151 539.3 748 46.1
C03p87160 Brassica napus HOM05D003889 ORTHO05D004407 3.0e-150 536.6 745 46.7
Nitab4.5_0008974g0010 Nicotiana tabacum HOM05D003889 ORTHO05D004407 8.8e-150 535.0 716 48.3
CsaV3_2G031090 Cucumis sativus L. HOM05D003889 ORTHO05D004407 3.4e-149 533.1 736 47.7
DCAR_000737 Daucus carota HOM05D003889 ORTHO05D004407 4.4e-149 532.7 747 47.0
MBI04_g19381_MAGBIO Magnolia biondii HOM05D003889 ORTHO05D004407 5.7e-149 532.3 819 44.1
Oeu018088.1 Olea europaea HOM05D003889 ORTHO05D004407 7.5e-149 531.9 734 48.2
AUR62023039 Chenopodium quinoa HOM05D003889 ORTHO05D004407 1.3e-148 531.2 741 47.2
arahy.Tifrunner.gnm1.ann1.NKLE2F Arachis hypogaea HOM05D003889 ORTHO05D004407 2.2e-148 530.4 742 47.3
BraA08t33755Z Brassica rapa HOM05D003889 ORTHO05D004407 2.2e-148 530.4 747 46.6
arahy.Tifrunner.gnm1.ann1.D2VLN9 Arachis hypogaea HOM05D003889 ORTHO05D004407 2.8e-148 530.0 748 47.7
MELO3C011159.2 Cucumis melo HOM05D003889 ORTHO05D004407 2.8e-148 530.0 738 47.8
Oeu031571.1 Olea europaea HOM05D003889 ORTHO05D004407 3.7e-148 529.6 732 48.0
Sed0021057 Sechium edule HOM05D003889 ORTHO05D004407 8.3e-148 528.5 760 48.6
Sc23g0005860 Simmondsia chinensis HOM05D003889 ORTHO05D004407 7.0e-147 525.4 764 47.0
Ca_12818_v3 Cicer arietinum L. HOM05D003889 ORTHO05D004407 9.1e-147 525.0 734 48.8
TPR.G12075 Trifolium pratense HOM05D003889 ORTHO05D004407 9.1e-147 525.0 734 47.3
Hund03446 Selenicereus undatus HOM05D003889 ORTHO05D004407 1.2e-146 524.6 740 47.4
BolC3t21018H Brassica oleracea HOM05D003889 ORTHO05D004407 1.6e-146 524.2 755 46.8
VMungo0647G0349 Vigna mungo HOM05D003889 ORTHO05D004407 5.9e-146 522.3 734 46.5
CAN.G886.4 Capsicum annuum HOM05D003889 ORTHO05D004407 1.7e-145 520.8 762 45.9
FAN20G0810 Fragaria x ananassa HOM05D003889 ORTHO05D004407 1.7e-145 520.8 720 46.9
Medtr1g008600 Medicago truncatula HOM05D003889 ORTHO05D004407 1.2e-143 514.6 732 47.1
Peaxi162Scf00105g00416 Petunia axillaris HOM05D003889 ORTHO05D004407 1.8e-142 510.8 736 47.1
Psat6g033880 Pisum sativum HOM05D003889 ORTHO05D004407 2.6e-141 506.9 743 46.3
AUR62009357 Chenopodium quinoa HOM05D003889 ORTHO05D004407 4.4e-141 506.1 745 46.3
Migut.A00236 Erythranthe guttata HOM05D003889 ORTHO05D004407 1.3e-140 504.6 749 46.3
ClCG08G012400 Citrullus lanatus HOM05D003889 ORTHO05D004407 4.9e-140 502.7 724 45.6
SGA_v2.0_scaffold243G44298 Striga asiatica HOM05D003889 ORTHO05D004407 4.9e-140 502.7 731 47.2
Phvul.008G158500 Phaseolus vulgaris HOM05D003889 ORTHO05D004407 6.3e-140 502.3 730 46.0
EL10Ac2g04091 Beta vulgaris HOM05D003889 ORTHO05D004407 7.7e-138 495.4 757 46.1
Lsat_1_v5_gn_6_11181 Lactuca sativa HOM05D003889 ORTHO05D004407 2.3e-137 493.8 723 45.6
HanXRQChr14g0435171 Helianthus annuus HOM05D003889 ORTHO05D004407 1.8e-134 484.2 728 44.9
ECA233G2562 Erigeron canadensis HOM05D003889 ORTHO05D004407 2.3e-134 483.8 722 43.5
Eucgr.C02886 Eucalyptus grandis HOM05D003889 ORTHO05D004407 9.2e-131 471.9 531 51.4
Thhalv10024191m.g Eutrema salsugineum HOM05D003889 ORTHO05D004407 9.2e-131 471.9 479 57.0
Ah.10g035410 Amaranthus hybridus HOM05D003889 ORTHO05D004407 1.0e-121 441.8 746 42.2
ATR0916G007 Amborella trichopoda HOM05D003889 ORTHO05D004407 3.0e-121 440.3 797 40.7
SalBow4G0524 Salvia bowleyana HOM05D003889 ORTHO05D004407 3.0e-121 440.3 820 40.0
Os12g0291000 Oryza sativa ssp. japonica HOM05D003889 ORTHO05D004407 2.3e-110 404.1 766 40.9
HPP92_002909 Vanilla planifolia HOM05D003889 ORTHO05D004407 7.1e-107 392.5 792 38.8
Zm00001eb409880 Zea mays HOM05D003889 ORTHO05D004407 6.6e-105 386.0 773 38.4
CSS0033742 Camellia sinensis var. sinensis HOM05D003889 ORTHO05D004407 1.4e-102 378.3 393 57.5
unitig_37.g12219 Utricularia gibba HOM05D003889 ORTHO05D004407 1.4e-86 325.1 755 36.6
Mapoly0097s0045 Marchantia polymorpha HOM05D003889 ORTHO05D004407 1.9e-80 304.7 547 38.4
AagrBONN_evm.TU.Sc2ySwM_117.2429 Anthoceros agrestis HOM05D003889 ORTHO05D004407 9.6e-80 302.4 527 41.7
Pp3c1_24760 Physcomitrium patens HOM05D003889 ORTHO05D004407 1.1e-78 298.9 218 68.3
Pp3c5_12930 Physcomitrium patens HOM05D003889 ORTHO05D004407 5.8e-77 293.1 504 39.3
SHI18632 Sapria himalayana HOM05D003889 ORTHO05D004407 1.7e-68 265.0 186 75.3
Gohir.D13G192600 Gossypium hirsutum HOM05D003889 ORTHO05D004407 1.8e-65 255.0 160 81.9
PGSC0003DMG400014493 Solanum tuberosum HOM05D003889 ORTHO05D004407 2.0e-61 241.5 556 37.2
PGSC0003DMG400014494 Solanum tuberosum HOM05D003889 ORTHO05D004407 3.8e-60 237.3 158 77.2
CBR_g998 Chara braunii HOM05D003889 ORTHO05D004407 1.1e-56 225.7 173 61.3
CSS0036613 Camellia sinensis var. sinensis HOM05D003889 ORTHO05D004407 5.2e-49 200.3 171 67.3
CSS0044117 Camellia sinensis var. sinensis HOM05D003889 ORTHO05D004407 5.7e-48 196.8 180 63.9
CSS0042394 Camellia sinensis var. sinensis HOM05D003889 ORTHO05D004407 3.7e-47 194.1 181 63.0
Haze_13402 Corylus avellana HOM05D003889 ORTHO05D004407 3.1e-46 191.0 198 55.6
Cre16.g664301 Chlamydomonas reinhardtii HOM05D003889 ORTHO05D004407 7.0e-46 189.9 239 46.4
SEGI_30069 Sequoiadendron giganteum HOM05D003889 ORTHO05D004407 9.1e-46 189.5 131 74.8
MCO01G257 Micromonas commoda HOM05D003889 ORTHO05D004407 2.8e-39 167.9 258 40.7
SHI18636 Sapria himalayana HOM05D003889 ORTHO05D004407 2.8e-39 167.9 393 32.6
Lsat_1_v5_gn_3_5760 Lactuca sativa HOM05D003889 ORTHO05D004407 3.5e-37 161.0 250 41.6
Cre08.g384390 Chlamydomonas reinhardtii HOM05D003889 ORTHO05D004407 3.4e-32 144.4 208 44.2
PRCOL_00006968 Prasinoderma coloniale HOM05D003889 ORTHO05D004407 1.8e-30 138.7 406 30.5
Lsat_1_v5_gn_6_24580 Lactuca sativa HOM05D003889 ORTHO05D004407 2.5e-27 128.3 94 70.2
Lsat_1_v5_gn_4_66900 Lactuca sativa HOM05D003889 ORTHO05D004407 5.5e-27 127.1 96 67.7
Lsat_1_v5_gn_8_47340 Lactuca sativa HOM05D003889 ORTHO05D002785 1.6e-26 125.6 96 66.7
CSS0033543 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000071 2.1e-26 125.2 87 72.4
CDE05G0389 Ceratophyllum demersum HOM05D003889 ORTHO05D004407 2.8e-23 114.8 185 42.2
Aqoxy520s001 Aquilegia oxysepala HOM05D003889 ORTHO05D004407 1.5e-19 102.4 71 76.1
Actinidia24572 Actinidia chinensis HOM05D003889 ORTHO05D004407 5.6e-19 100.5 63 82.5
CDE05G0843 Ceratophyllum demersum HOM05D003889 ORTHO05D004407 4.9e-15 87.4 49 87.8
SEGI_15374 Sequoiadendron giganteum HOM05D003889 ORTHO05D004407 6.4e-15 87.0 68 69.1
Lsat_1_v5_gn_6_75601 Lactuca sativa HOM05D003889 ORTHO05D004407 7.8e-13 80.1 47 78.7
SHI18637 Sapria himalayana HOM05D003889 ORTHO05D004407 3.6e-10 71.2 157 37.6
PRCOL_00000726 Prasinoderma coloniale HOM05D000924 ORTHO05D001209 9.8e-08 63.2 217 28.6
ATR0484G001 Amborella trichopoda HOM05D003889 ORTHO05D004407 1.1e-06 59.7 194 32.5
Pp3c5_3790 Physcomitrium patens HOM05D000924 ORTHO05D007614 1.1e-06 59.7 194 26.3
Eucgr.B00583 Eucalyptus grandis HOM05D000924 ORTHO05D001209 1.4e-06 59.3 180 26.1
MCO14G361 Micromonas commoda HOM05D000924 ORTHO05D001209 1.4e-06 59.3 191 30.4
Zm00001eb184840 Zea mays HOM05D000924 ORTHO05D007614 5.4e-06 57.4 229 24.9
Cre01.g027150 Chlamydomonas reinhardtii HOM05D001007 ORTHO05D008005 7.0e-06 57.0 215 23.3
TAR371G1183 Trochodendron aralioides HOM05D000924 ORTHO05D007614 7.0e-06 57.0 236 23.7
Sp1g18660 Schrenkiella parvula HOM05D000924 ORTHO05D001209 9.2e-06 56.6 186 22.6


User provided reference genes

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