Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 2.0e-228 795.4 405 100.0
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 1.9e-37 161.0 129 66.7
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 2.5e-37 160.6 129 65.1
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 3.3e-37 160.2 129 67.4
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 5.6e-37 159.5 129 66.7
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 2.8e-36 157.1 129 65.9
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 4.7e-36 156.4 129 65.9
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 4.0e-35 153.3 130 60.0
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 4.0e-35 153.3 130 60.0
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 2.0e-34 151.0 128 61.7
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 5.8e-34 149.4 130 62.3
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 9.9e-34 148.7 130 62.3
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 9.9e-34 148.7 129 62.0
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 4.9e-33 146.4 138 58.0
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 5.4e-32 142.9 130 59.2
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 5.4e-32 142.9 130 59.2
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 1.6e-31 141.4 136 57.4
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 3.5e-31 140.2 132 61.4
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 4.6e-31 139.8 126 58.7
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 4.6e-31 139.8 136 58.1
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 1.0e-30 138.7 129 56.6
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 8.6e-30 135.6 138 57.2
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 1.1e-29 135.2 126 54.0
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 1.5e-29 134.8 126 58.7
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.5e-29 134.8 131 57.3
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 1.9e-29 134.4 138 56.5
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 2.5e-29 134.0 131 57.3
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 3.3e-29 133.7 131 56.5
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 5.6e-29 132.9 129 54.3
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 7.3e-29 132.5 180 44.4
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 7.3e-29 132.5 187 45.5
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 9.5e-29 132.1 128 57.8
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 9.5e-29 132.1 129 54.3
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 1.2e-28 131.7 129 53.5
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 2.8e-28 130.6 139 52.5
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 1.1e-27 128.6 124 56.5
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 1.1e-27 128.6 130 56.9
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 1.1e-27 128.6 132 54.5
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 1.8e-27 127.9 131 54.2
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 2.4e-27 127.5 132 54.5
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 2.4e-27 127.5 131 55.7
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 3.1e-27 127.1 131 55.7
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 5.2e-27 126.3 130 55.4
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 6.8e-27 125.9 133 56.4
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 6.8e-27 125.9 132 50.8
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 2.0e-26 124.4 185 42.2
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 2.6e-26 124.0 126 54.0
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 2.6e-26 124.0 130 53.8
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 2.6e-26 124.0 130 53.1
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 5.8e-26 122.9 132 50.0
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 7.6e-26 122.5 123 54.5
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 1.3e-25 121.7 122 56.6
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 1.3e-25 121.7 132 53.8
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 1.7e-25 121.3 122 54.1
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 2.9e-25 120.6 129 52.7
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 3.8e-25 120.2 126 52.4
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 8.4e-25 119.0 122 54.9
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 3.2e-24 117.1 129 50.4
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 4.2e-24 116.7 129 50.4
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 1.6e-23 114.8 129 50.4
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 3.5e-23 113.6 121 51.2
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 6.0e-23 112.8 131 50.4
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 6.0e-23 112.8 129 48.1
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 7.8e-23 112.5 158 45.6
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 2.3e-22 110.9 131 51.1
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 3.0e-22 110.5 131 49.6
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 3.0e-22 110.5 131 49.6
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 3.0e-22 110.5 122 52.5
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 5.1e-22 109.8 108 53.7
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 6.6e-22 109.4 131 50.4
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 6.6e-22 109.4 129 48.1
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 1.9e-21 107.8 121 52.1
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 3.3e-21 107.1 121 51.2
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 1.2e-20 105.1 128 48.4
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 1.6e-20 104.8 120 50.8
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 2.8e-20 104.0 121 51.2
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 3.6e-20 103.6 126 50.0
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 3.6e-20 103.6 121 50.4
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 4.7e-20 103.2 119 50.4
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 8.1e-20 102.4 110 51.8
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 1.1e-19 102.1 102 53.9
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 1.4e-19 101.7 127 48.0
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 1.4e-19 101.7 125 45.6
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.8e-19 101.3 126 47.6
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 3.1e-19 100.5 117 52.1
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 6.9e-19 99.4 126 46.0
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 2.6e-18 97.4 121 46.3
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 2.2e-17 94.4 119 49.6
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 1.9e-16 91.3 148 40.5
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 5.4e-16 89.7 90 52.2
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 9.3e-16 89.0 121 46.3
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 9.3e-16 89.0 132 42.4
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 3.9e-14 83.6 196 33.7
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 9.6e-13 79.0 135 42.2
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 6.9e-11 72.8 95 47.4
Cpa.g.sc169.8 Carica papaya HOM05D000003 ORTHO05D000006 1.2e-10 72.0 89 38.2
Cpa.g.sc33.113 Carica papaya HOM05D012693 ORTHO05D000006 2.6e-10 70.9 92 32.6
Cpa.g.sc91.68 Carica papaya HOM05D012693 ORTHO05D000006 4.5e-10 70.1 86 34.9
Cpa.g.c37061.2 Carica papaya HOM05D000003 ORTHO05D000006 7.6e-10 69.3 83 38.6
Cpa.g.sc221.2 Carica papaya HOM05D000003 ORTHO05D000006 7.6e-10 69.3 89 39.3
Cpa.g.sc115.34 Carica papaya HOM05D000003 ORTHO05D000006 3.8e-09 67.0 114 35.1
Cpa.g.sc17.89 Carica papaya HOM05D000003 ORTHO05D000006 3.8e-09 67.0 84 32.1
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 3.8e-09 67.0 98 42.9
Cpa.g.sc99.47 Carica papaya HOM05D000554 ORTHO05D000860 1.1e-08 65.5 178 28.1
Cpa.g.sc11.105 Carica papaya HOM05D000003 ORTHO05D000006 1.9e-08 64.7 74 40.5
Cpa.g.sc34.165 Carica papaya HOM05D000003 ORTHO05D000006 1.9e-08 64.7 157 28.7
Cpa.g.sc88.9 Carica papaya HOM05D000003 ORTHO05D000006 1.9e-08 64.7 93 34.4
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 2.4e-08 64.3 57 56.1
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 7.1e-08 62.8 65 52.3
Cpa.g.sc7.215 Carica papaya HOM05D000003 ORTHO05D000006 7.1e-08 62.8 92 30.4
BcaC05g28757 Brassica carinata HOM05D004619 ORTHO05D032420 4.6e-07 60.1 48 62.5
Cpa.g.sc0.2 Carica papaya HOM05D000003 ORTHO05D000006 2.3e-06 57.8 85 29.4
Cpa.g.sc54.17 Carica papaya HOM05D000003 ORTHO05D000006 2.3e-06 57.8 140 27.1
Cpa.g.sc58.29 Carica papaya HOM05D026056 ORTHO05D000006 2.3e-06 57.8 93 30.1
CiPaw.01G000700 Carya illinoinensis HOM05D000003 ORTHO05D000006 3.0e-06 57.4 126 30.2
CiPaw.04G081300 Carya illinoinensis HOM05D000003 ORTHO05D000006 3.0e-06 57.4 79 38.0
Cpa.g.sc82.57 Carica papaya HOM05D000003 ORTHO05D000006 3.9e-06 57.0 172 25.6
CiPaw.01G132400 Carya illinoinensis HOM05D000003 ORTHO05D000006 3.9e-06 57.0 80 35.0
CiPaw.03G068000 Carya illinoinensis HOM05D000003 ORTHO05D000006 6.7e-06 56.2 80 32.5


User provided reference genes

Program Settings