Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc73.30 Carica papaya HOM05D003719 ORTHO05D004116 6.2e-215 750.7 416 100.0
Manes.09G133700 Manihot esculenta HOM05D003719 ORTHO05D004116 3.3e-91 339.7 320 57.8
Potri.013G070400 Populus trichocarpa HOM05D003719 ORTHO05D004116 4.0e-89 332.8 321 56.7
Duzib177G0203 Durio zibethinus HOM05D003719 ORTHO05D004116 3.4e-88 329.7 320 57.5
Potri.019G044400 Populus trichocarpa HOM05D003719 ORTHO05D004116 7.6e-88 328.6 321 58.3
Duzib128G0107 Durio zibethinus HOM05D003719 ORTHO05D004116 1.0e-87 328.2 318 57.9
Sabra19G0054700 Salix brachista HOM05D003719 ORTHO05D004116 1.3e-87 327.8 321 58.3
Thecc.05G235300 Theobroma cacao HOM05D003719 ORTHO05D004116 4.9e-87 325.9 321 56.7
Manes.08G156200 Manihot esculenta HOM05D003719 ORTHO05D004116 2.5e-83 313.5 321 57.0
Gohir.A11G301800 Gossypium hirsutum HOM05D003719 ORTHO05D004116 9.6e-83 311.6 320 55.9
Sabra13G0061200 Salix brachista HOM05D003719 ORTHO05D004116 1.3e-82 311.2 320 55.9
TWI32G1338 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 2.1e-82 310.5 318 55.0
Gohir.D11G317400 Gossypium hirsutum HOM05D003719 ORTHO05D004116 1.1e-81 308.1 321 56.1
Gorai.007G347200 Gossypium raimondii HOM05D003719 ORTHO05D004116 1.4e-81 307.8 321 56.1
TWI60G0027 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 6.9e-81 305.4 318 55.0
Haze_15777 Corylus avellana HOM05D003719 ORTHO05D004116 4.5e-80 302.8 330 53.6
QL04p053441 Quercus lobata HOM05D003719 ORTHO05D004116 3.5e-77 293.1 318 56.3
Dinv43515 Davidia involucrata HOM05D003719 ORTHO05D004116 1.8e-76 290.8 325 51.7
FvH4_7g08280 Fragaria vesca HOM05D003719 ORTHO05D004116 2.3e-76 290.4 328 52.1
Ciclev10031549m.g Citrus clementina HOM05D003719 ORTHO05D004116 1.9e-75 287.3 314 52.2
THA.LOC104827246 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 2.2e-74 283.9 418 46.2
MD07G1081800 Malus domestica HOM05D003719 ORTHO05D004116 4.8e-74 282.7 322 51.6
RcHm_v2.0_Chr1g0340791 Rosa chinensis HOM05D003719 ORTHO05D004116 6.3e-74 282.3 321 51.4
CANSAT25G2268 Cannabis sativa HOM05D003719 ORTHO05D004116 1.1e-73 281.6 320 51.9
CiPaw.02G047600 Carya illinoinensis HOM05D003719 ORTHO05D004116 1.1e-73 281.6 321 52.3
THA.LOC104802889 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 6.9e-73 278.9 408 49.5
Dinv43958 Davidia involucrata HOM05D003719 ORTHO05D004116 8.5e-71 271.9 327 49.2
MD02G1231000 Malus domestica HOM05D003719 ORTHO05D004116 1.4e-70 271.2 324 50.6
FAN06G0622 Fragaria x ananassa HOM05D003719 ORTHO05D004116 2.5e-70 270.4 338 49.4
Atru.chr2.1627 Acer truncatum HOM05D003719 ORTHO05D004116 2.1e-69 267.3 315 51.4
TAR629G0070 Trochodendron aralioides HOM05D003719 ORTHO05D004116 2.1e-69 267.3 315 50.8
ClCG06G000580 Citrullus lanatus HOM05D003719 ORTHO05D004116 7.9e-69 265.4 327 50.2
FAN10G3972 Fragaria x ananassa HOM05D003719 ORTHO05D004116 3.0e-68 263.5 332 49.1
THA.LOC104820814 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 5.1e-68 262.7 428 46.0
CsaV3_6G006350 Cucumis sativus L. HOM05D003719 ORTHO05D004116 1.5e-67 261.2 327 49.2
Sed0010466 Sechium edule HOM05D003719 ORTHO05D004116 1.3e-66 258.1 322 50.0
Actinidia05832 Actinidia chinensis HOM05D003719 ORTHO05D004116 2.8e-66 256.9 319 48.3
MELO3C022484.2 Cucumis melo HOM05D003719 ORTHO05D004116 6.3e-66 255.8 328 48.5
Actinidia31730 Actinidia chinensis HOM05D003719 ORTHO05D004116 2.4e-65 253.8 320 47.8
AL6G28780 Arabidopsis lyrata HOM05D003719 ORTHO05D004116 3.1e-65 253.4 321 52.3
GSVIVG01019328001 Vitis vinifera HOM05D003719 ORTHO05D004116 3.1e-65 253.4 318 50.9
Carub.0006s1593 Capsella rubella HOM05D003719 ORTHO05D004116 6.9e-65 252.3 325 50.5
Eucgr.E01743 Eucalyptus grandis HOM05D003719 ORTHO05D004116 9.1e-65 251.9 326 48.5
AT5G17690 Arabidopsis thaliana HOM05D003719 ORTHO05D004116 3.8e-63 246.5 326 50.3
Sp6g26530 Schrenkiella parvula HOM05D003719 ORTHO05D004116 1.1e-62 245.0 321 50.8
Nn1g09363 Nelumbo nucifera HOM05D003719 ORTHO05D004116 5.5e-62 242.7 325 44.6
Thhalv10013571m.g Eutrema salsugineum HOM05D003719 ORTHO05D004116 6.1e-61 239.2 327 49.2
Aa31LG11G11940 Aethionema arabicum HOM05D003719 ORTHO05D004116 1.0e-60 238.4 311 48.9
arahy.Tifrunner.gnm1.ann1.U92JU2 Arachis hypogaea HOM05D003719 ORTHO05D004116 3.0e-60 236.9 317 47.9
arahy.Tifrunner.gnm1.ann1.N569AS Arachis hypogaea HOM05D003719 ORTHO05D004116 3.9e-60 236.5 317 47.6
Prupe.2G107000 Prunus persica HOM05D003719 ORTHO05D004116 6.7e-60 235.7 292 50.7
MBI04_g06283_MAGBIO Magnolia biondii HOM05D003719 ORTHO05D004116 1.5e-59 234.6 323 43.7
CARHR195490 Cardamine hirsuta HOM05D003719 ORTHO05D004116 9.7e-59 231.9 323 48.3
PGR042G1172 Punica granatum HOM05D003719 ORTHO05D004116 1.7e-58 231.1 321 48.9
Sed0012975 Sechium edule HOM05D003719 ORTHO05D004116 3.7e-58 229.9 327 42.5
Hma1.2p1_0128F.1_g060060 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 4.8e-58 229.6 325 45.5
Rhsim07G0047900 Rhododendron simsii HOM05D003719 ORTHO05D004116 1.5e-56 224.6 355 43.4
COL.COLO4_32214 Corchorus olitorius HOM05D003719 ORTHO05D004116 2.2e-55 220.7 267 52.1
FAN03G1006 Fragaria x ananassa HOM05D003719 ORTHO05D004116 2.5e-54 217.2 320 44.7
Nitab4.5_0000050g0180 Nicotiana tabacum HOM05D003719 ORTHO05D004116 2.5e-54 217.2 317 44.5
SHI54853 Sapria himalayana HOM05D003719 ORTHO05D004116 3.2e-54 216.9 316 45.9
Glyma.16G079900 Glycine max HOM05D003719 ORTHO05D004116 1.8e-52 211.1 317 42.3
Migut.N01648 Erythranthe guttata HOM05D003719 ORTHO05D004116 3.0e-52 210.3 323 42.4
BraA09t37591Z Brassica rapa HOM05D003719 ORTHO05D004116 1.1e-51 208.4 323 46.7
Nitab4.5_0025236g0010 Nicotiana tabacum HOM05D003719 ORTHO05D004116 2.0e-51 207.6 330 42.7
VMungo0331G0617 Vigna mungo HOM05D003719 ORTHO05D004116 2.0e-51 207.6 316 44.0
BcaB08g36751 Brassica carinata HOM05D003719 ORTHO05D004116 2.6e-51 207.2 331 46.2
Nitab4.5_0000792g0110 Nicotiana tabacum HOM05D003719 ORTHO05D004116 4.4e-51 206.5 318 42.5
Lj3g0017682 Lotus japonicus HOM05D003719 ORTHO05D004116 5.7e-51 206.1 317 42.6
A10p21730 Brassica napus HOM05D003719 ORTHO05D004116 1.3e-50 204.9 326 46.0
BraA10t44234Z Brassica rapa HOM05D003719 ORTHO05D004116 1.3e-50 204.9 326 46.0
Cc02_g26500 Coffea canephora HOM05D003719 ORTHO05D004116 1.3e-50 204.9 315 44.4
Glyma.03G094200 Glycine max HOM05D003719 ORTHO05D004116 2.8e-50 203.8 322 41.6
Phvul.010G034600 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 9.1e-49 198.7 322 44.1
HanXRQChr04g0117621 Helianthus annuus HOM05D003719 ORTHO05D004116 2.0e-48 197.6 326 39.0
vmacro13601 Vaccinium macrocarpon HOM05D003719 ORTHO05D004116 3.5e-48 196.8 328 40.9
MSTRG.4990 Avicennia marina HOM05D003719 ORTHO05D004116 4.5e-48 196.4 321 41.7
BcaC04g18768 Brassica carinata HOM05D003719 ORTHO05D004116 5.9e-48 196.1 324 45.1
C09p59480 Brassica napus HOM05D003719 ORTHO05D004116 5.9e-48 196.1 324 45.1
BolC9t58786H Brassica oleracea HOM05D003719 ORTHO05D004116 5.9e-48 196.1 324 45.1
BolC2t06833H Brassica oleracea HOM05D003719 ORTHO05D004116 7.7e-48 195.7 318 42.8
A02p04380 Brassica napus HOM05D003719 ORTHO05D004116 1.7e-47 194.5 413 38.7
BraA02t05402Z Brassica rapa HOM05D003719 ORTHO05D004116 5.0e-47 193.0 413 38.5
C02p09250 Brassica napus HOM05D003719 ORTHO05D004116 1.9e-46 191.0 421 37.3
Phvul.009G117500 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 4.2e-46 189.9 317 41.3
Oeu020240.1 Olea europaea HOM05D003719 ORTHO05D004116 9.4e-46 188.7 325 40.9
BcaC03g13534 Brassica carinata HOM05D003719 ORTHO05D004116 1.2e-45 188.3 418 37.1
Sopen01g033060 Solanum pennellii HOM05D003719 ORTHO05D004116 2.1e-45 187.6 316 41.1
FAN01G0294 Fragaria x ananassa HOM05D003719 ORTHO05D004116 2.7e-45 187.2 244 48.4
Lj9A617T60 Lonicera japonica HOM05D003719 ORTHO05D004116 2.7e-45 187.2 323 41.8
Solyc01g081500.4 Solanum lycopersicum HOM05D003719 ORTHO05D004116 3.6e-45 186.8 316 41.1
Nitab4.5_0003123g0030 Nicotiana tabacum HOM05D003719 ORTHO05D004116 1.4e-44 184.9 343 39.4
VMungo1309G0350 Vigna mungo HOM05D003719 ORTHO05D004116 5.2e-44 183.0 316 41.5
ClCG05G002450 Citrullus lanatus HOM05D003719 ORTHO05D004116 1.2e-43 181.8 315 40.0
Oeu045633.2 Olea europaea HOM05D003719 ORTHO05D004116 2.0e-43 181.0 322 37.3
Oeu034882.1 Olea europaea HOM05D003719 ORTHO05D004116 3.4e-43 180.3 241 48.5
PSO017G6528 Papaver somniferum HOM05D003719 ORTHO05D004116 5.7e-43 179.5 336 37.8
PSO170G0628 Papaver somniferum HOM05D003719 ORTHO05D004116 7.5e-43 179.1 345 37.7
Sc02g0003460 Simmondsia chinensis HOM05D003719 ORTHO05D004116 9.8e-43 178.7 320 40.0
EL10Ac1g00661 Beta vulgaris HOM05D003719 ORTHO05D004116 1.3e-42 178.3 318 37.7
ECA236G3956 Erigeron canadensis HOM05D001257 ORTHO05D005285 1.7e-42 177.9 325 36.9
PGSC0003DMG400031112 Solanum tuberosum HOM05D003719 ORTHO05D004116 1.7e-42 177.9 329 38.9
Oeu024948.1 Olea europaea HOM05D003719 ORTHO05D004116 1.2e-40 171.8 317 36.9
Peaxi162Scf00245g00417 Petunia axillaris HOM05D003719 ORTHO05D004116 2.7e-40 170.6 354 36.7
Hund17170 Selenicereus undatus HOM05D003719 ORTHO05D000105 3.5e-40 170.2 316 38.9
SGA_v2.0_scaffold95G28748 Striga asiatica HOM05D003719 ORTHO05D004116 5.9e-40 169.5 326 40.5
Lalb_Chr07g0194591 Lupinus albus HOM05D003719 ORTHO05D004116 3.8e-39 166.8 309 37.5
TPR.G9787 Trifolium pratense HOM05D003719 ORTHO05D004116 3.8e-39 166.8 348 37.4
Lalb_Chr13g0290971 Lupinus albus HOM05D003719 ORTHO05D004116 1.9e-38 164.5 310 37.7
Oeu032776.1 Olea europaea HOM05D003719 ORTHO05D004116 1.9e-38 164.5 328 36.3
HanXRQChr11g0343451 Helianthus annuus HOM05D003719 ORTHO05D004116 9.4e-38 162.2 322 36.6
Aqoxy7G02508 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 1.6e-37 161.4 323 36.2
TPR.G38555 Trifolium pratense HOM05D001257 ORTHO05D005285 1.4e-36 158.3 329 38.3
Ah.05g177100 Amaranthus hybridus HOM05D003719 ORTHO05D004116 1.8e-36 157.9 313 38.7
Hma1.2p1_0462F.1_g158020 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 5.2e-36 156.4 291 39.9
Sed0017190 Sechium edule HOM05D003719 ORTHO05D004116 1.5e-35 154.8 315 39.0
Glyma.06G001700 Glycine max HOM05D003719 ORTHO05D004116 2.6e-35 154.1 312 38.1
Peaxi162Scf00907g00023 Petunia axillaris HOM05D003719 ORTHO05D004116 4.4e-35 153.3 324 35.5
Glyma.04G002100 Glycine max HOM05D003719 ORTHO05D004116 1.3e-34 151.8 311 38.3
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 4.9e-34 149.8 317 34.1
Ca_23168_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 4.1e-33 146.7 321 36.8
Os10g0324900 Oryza sativa ssp. japonica HOM05D003719 ORTHO05D004116 4.1e-33 146.7 320 34.7
CDE11G0837 Ceratophyllum demersum HOM05D003719 ORTHO05D004116 7.0e-33 146.0 325 35.7
PGSC0003DMG400031514 Solanum tuberosum HOM05D003719 ORTHO05D004116 7.0e-33 146.0 426 32.4
Ca_15283_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 2.7e-32 144.1 283 39.2
Ca_15419_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 2.7e-32 144.1 283 39.2
HPP92_020485 Vanilla planifolia HOM05D003719 ORTHO05D004116 1.0e-31 142.1 324 33.6
Lsat_1_v5_gn_1_89600 Lactuca sativa HOM05D003719 ORTHO05D004116 2.3e-31 141.0 310 35.2
Solyc10g024470.3 Solanum lycopersicum HOM05D003719 ORTHO05D004116 2.3e-31 141.0 414 32.1
arahy.Tifrunner.gnm1.ann1.E07VAV Arachis hypogaea HOM05D003719 ORTHO05D004116 1.1e-30 138.7 322 36.0
Lalb_Chr12g0210141 Lupinus albus HOM05D003719 ORTHO05D004116 1.5e-30 138.3 314 34.7
unitig_0.g1580 Utricularia gibba HOM05D003719 ORTHO05D004116 2.5e-30 137.5 308 32.8
DCAR_025000 Daucus carota HOM05D003719 ORTHO05D004116 7.2e-30 136.0 175 46.9
DCAR_015727 Daucus carota HOM05D003719 ORTHO05D004116 3.6e-29 133.7 246 41.9
Lalb_Chr23g0264911 Lupinus albus HOM05D003719 ORTHO05D004116 8.0e-29 132.5 308 35.4
ECA248G2234 Erigeron canadensis HOM05D003719 ORTHO05D004116 1.4e-28 131.7 342 32.5
Glyma.03G111600 Glycine max HOM05D003719 ORTHO05D004116 1.4e-28 131.7 191 44.0
Sopen10g009690 Solanum pennellii HOM05D003719 ORTHO05D004116 2.3e-28 131.0 179 46.4
BraA09t38097Z Brassica rapa HOM05D003719 ORTHO05D004116 1.5e-27 128.3 177 49.2
SHI15580 Sapria himalayana HOM05D003719 ORTHO05D004116 2.0e-27 127.9 261 39.8
Lsat_1_v5_gn_7_34101 Lactuca sativa HOM05D003719 ORTHO05D004116 4.4e-27 126.7 340 31.5
DCAR_029570 Daucus carota HOM05D003719 ORTHO05D004116 7.5e-27 125.9 312 34.3
Psat5g001120 Pisum sativum HOM05D003719 ORTHO05D004116 9.8e-27 125.6 311 32.8
AUR62014507 Chenopodium quinoa HOM05D003719 ORTHO05D004116 1.3e-26 125.2 286 35.0
ATR0568G049 Amborella trichopoda HOM05D003719 ORTHO05D004116 2.2e-26 124.4 352 32.1
AUR62038028 Chenopodium quinoa HOM05D003719 ORTHO05D004116 2.9e-26 124.0 286 34.6
Migut.O00699 Erythranthe guttata HOM05D003719 ORTHO05D004116 1.8e-25 121.3 101 66.3
PSO732G0471 Papaver somniferum HOM05D003719 ORTHO05D004116 1.6e-24 118.2 311 33.4
Nn7g37398 Nelumbo nucifera HOM05D003719 ORTHO05D004116 2.5e-22 110.9 58 81.0
BcaB01g04909 Brassica carinata HOM05D003719 ORTHO05D004116 1.6e-21 108.2 312 34.0
SGA_v2.0_scaffold4G02229 Striga asiatica HOM05D003719 ORTHO05D004116 1.6e-21 108.2 322 33.5
PSO732G0498 Papaver somniferum HOM05D003719 ORTHO05D004116 1.0e-20 105.5 232 34.5
Ah.05g177090 Amaranthus hybridus HOM05D000308 ORTHO05D005285 2.3e-20 104.4 295 30.8
PSO732G0548 Papaver somniferum HOM05D003719 ORTHO05D004116 2.3e-20 104.4 232 34.1
BcaB01g05152 Brassica carinata HOM05D003719 ORTHO05D004116 3.1e-20 104.0 311 29.6
BolC3t13474H Brassica oleracea HOM05D003719 ORTHO05D004116 3.1e-20 104.0 311 29.6
Hund26916 Selenicereus undatus HOM05D003719 ORTHO05D004116 3.1e-20 104.0 312 31.7
PSO017G2223 Papaver somniferum HOM05D003719 ORTHO05D004116 1.2e-19 102.1 282 30.9
A03p08460 Brassica napus HOM05D003719 ORTHO05D004116 2.0e-19 101.3 308 31.5
BraA03t10169Z Brassica rapa HOM05D003719 ORTHO05D004116 2.0e-19 101.3 308 31.5
PSO170G3936 Papaver somniferum HOM05D033783 ORTHO05D004116 9.8e-19 99.0 79 60.8
PSO017G2979 Papaver somniferum HOM05D033783 ORTHO05D004116 2.2e-18 97.8 79 59.5
HanXRQChr04g0117671 Helianthus annuus HOM05D003719 ORTHO05D004116 1.4e-17 95.1 61 62.3
PSO349G0045 Papaver somniferum HOM05D003719 ORTHO05D004116 2.4e-17 94.4 322 27.3
Psat4g207560 Pisum sativum HOM05D003719 ORTHO05D004116 2.4e-17 94.4 119 42.9
SHI50054 Sapria himalayana HOM05D003719 ORTHO05D004116 9.2e-17 92.4 266 34.6
PSO675G5773 Papaver somniferum HOM05D003719 ORTHO05D004116 2.0e-16 91.3 92 52.2
Lalb_Chr10g0091841 Lupinus albus HOM05D003719 ORTHO05D004116 2.7e-16 90.9 56 62.5
PSO017G0756 Papaver somniferum HOM05D003719 ORTHO05D004116 7.8e-16 89.4 58 65.5
Lalb_Chr13g0290921 Lupinus albus HOM05D003719 ORTHO05D004116 1.3e-15 88.6 65 60.0
C03p09860 Brassica napus HOM05D003719 ORTHO05D004116 1.7e-15 88.2 311 28.9
SEGI_28532 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 3.0e-15 87.4 326 26.4
Mapoly0009s0028 Marchantia polymorpha HOM05D003719 ORTHO05D004116 3.3e-14 84.0 82 47.6
Migut.O00700 Erythranthe guttata HOM05D003719 ORTHO05D004116 7.3e-14 82.8 138 39.1
SEGI_39270 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 1.2e-13 82.0 387 26.9
Pp3c9_6410 Physcomitrium patens HOM05D003719 ORTHO05D004116 2.1e-13 81.3 87 46.0
Mapoly0024s0010 Marchantia polymorpha HOM05D003719 ORTHO05D004116 2.8e-13 80.9 88 46.6
Mapoly0010s0167 Marchantia polymorpha HOM05D003719 ORTHO05D004116 3.6e-13 80.5 88 45.5
PSO732G0588 Papaver somniferum HOM05D003719 ORTHO05D004116 2.9e-10 70.9 61 52.5
Aqoxy7G02797 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 2.4e-09 67.8 73 43.8
arahy.Tifrunner.gnm1.ann1.RGD672 Arachis hypogaea HOM05D022377 ORTHO05D004116 1.2e-08 65.5 76 38.2
arahy.Tifrunner.gnm1.ann1.FLAY3S Arachis hypogaea HOM05D003719 ORTHO05D004116 1.6e-08 65.1 73 39.7
arahy.Tifrunner.gnm1.ann1.ACR8J8 Arachis hypogaea HOM05D022377 ORTHO05D004116 2.3e-07 61.2 78 35.9
arahy.Tifrunner.gnm1.ann1.SX0HJ3 Arachis hypogaea HOM05D022377 ORTHO05D004116 8.6e-07 59.3 82 32.9
FAN01G0740 Fragaria x ananassa HOM05D003719 ORTHO05D004116 8.6e-07 59.3 90 38.9


User provided reference genes

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