Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc7.33 Carica papaya HOM05D006143 ORTHO05D007587 9.4e-270 932.9 472 100.0
Manes.16G034450 Manihot esculenta HOM05D006143 ORTHO05D007587 2.0e-134 483.4 471 57.1
Thecc.06G177300 Theobroma cacao HOM05D006143 ORTHO05D007587 3.5e-131 472.6 464 57.3
Dinv17374 Davidia involucrata HOM05D006143 ORTHO05D007587 1.2e-128 464.2 471 55.4
CiPaw.10G054900 Carya illinoinensis HOM05D006143 ORTHO05D007587 8.0e-128 461.5 468 55.1
Potri.011G062100 Populus trichocarpa HOM05D006143 ORTHO05D007587 1.4e-127 460.7 462 55.6
Duzib235G0124 Durio zibethinus HOM05D006143 ORTHO05D007587 2.3e-127 459.9 478 55.0
GSVIVG01021150001 Vitis vinifera HOM05D006143 ORTHO05D007587 1.2e-126 457.6 473 53.1
Sabra11G0044000 Salix brachista HOM05D006143 ORTHO05D007587 2.2e-125 453.4 457 54.9
RcHm_v2.0_Chr5g0009801 Rosa chinensis HOM05D006143 ORTHO05D007587 1.0e-122 444.5 467 51.8
Prupe.4G055900 Prunus persica HOM05D006143 ORTHO05D007587 5.0e-122 442.2 469 53.5
Atru.chr10.1746 Acer truncatum HOM05D006143 ORTHO05D007587 6.6e-122 441.8 458 53.1
Hma1.2p1_0155F.1_g068560 Hydrangea macrophylla HOM05D006143 ORTHO05D007587 6.6e-122 441.8 469 52.0
TWI63G1355 Tripterygium wilfordii HOM05D006143 ORTHO05D007587 3.0e-119 433.0 449 54.3
ClCG03G007960 Citrullus lanatus HOM05D006143 ORTHO05D007587 4.0e-119 432.6 463 53.3
CSS0012799 Camellia sinensis var. sinensis HOM05D006143 ORTHO05D007587 4.4e-118 429.1 470 51.5
MD05G1306600 Malus domestica HOM05D006143 ORTHO05D007587 7.5e-118 428.3 470 50.9
THA.LOC104798414 Tarenaya hassleriana HOM05D006143 ORTHO05D007587 7.5e-118 428.3 451 51.2
MELO3C002630.2 Cucumis melo HOM05D006143 ORTHO05D007587 1.3e-117 427.6 462 51.9
FvH4_7g02070 Fragaria vesca HOM05D006143 ORTHO05D007587 2.4e-116 423.3 467 51.0
Gorai.011G031600 Gossypium raimondii HOM05D006143 ORTHO05D007587 2.4e-116 423.3 476 49.8
FAN11G1643 Fragaria x ananassa HOM05D006143 ORTHO05D007587 4.1e-116 422.5 466 52.4
Gohir.D10G029700 Gossypium hirsutum HOM05D006143 ORTHO05D007587 2.7e-115 419.9 476 49.6
FAN03G1069 Fragaria x ananassa HOM05D006143 ORTHO05D007587 6.0e-115 418.7 474 50.8
FAN06G1438 Fragaria x ananassa HOM05D006143 ORTHO05D007587 1.7e-114 417.2 475 50.3
Aa31LG6G1190 Aethionema arabicum HOM05D006143 ORTHO05D007587 6.6e-114 415.2 458 50.7
Thhalv10025244m.g Eutrema salsugineum HOM05D006143 ORTHO05D007587 6.6e-114 415.2 451 50.6
Eucgr.E03166 Eucalyptus grandis HOM05D006143 ORTHO05D007587 2.5e-113 413.3 471 50.7
AT4G18470 Arabidopsis thaliana HOM05D006143 ORTHO05D007587 1.8e-111 407.1 460 49.8
COL.COLO4_31385 Corchorus olitorius HOM05D006143 ORTHO05D007587 6.8e-111 405.2 449 50.3
Sp7g15570 Schrenkiella parvula HOM05D006143 ORTHO05D007587 8.9e-111 404.8 460 50.4
FAN21G2423 Fragaria x ananassa HOM05D006143 ORTHO05D007587 5.8e-110 402.1 466 51.1
CARHR225290 Cardamine hirsuta HOM05D006143 ORTHO05D007587 1.7e-109 400.6 453 50.6
BcaC09g51506 Brassica carinata HOM05D006143 ORTHO05D007587 2.2e-109 400.2 452 50.4
AL7G35830 Arabidopsis lyrata HOM05D006143 ORTHO05D007587 4.9e-109 399.1 453 50.1
BolC1t01214H Brassica oleracea HOM05D006143 ORTHO05D007587 1.1e-108 397.9 452 50.2
C01p12400 Brassica napus HOM05D006143 ORTHO05D007587 1.4e-108 397.5 452 50.0
BraA01t00988Z Brassica rapa HOM05D006143 ORTHO05D007587 1.4e-108 397.5 459 49.7
BcaNung05875 Brassica carinata HOM05D006143 ORTHO05D007587 3.2e-108 396.4 460 50.0
Ciclev10015477m.g Citrus clementina HOM05D006143 ORTHO05D007587 7.0e-108 395.2 409 54.0
Carub.0007s2278 Capsella rubella HOM05D006143 ORTHO05D007587 3.5e-107 392.9 460 48.3
Nn1g04309 Nelumbo nucifera HOM05D006143 ORTHO05D007587 3.5e-107 392.9 447 49.0
FAN16G0487 Fragaria x ananassa HOM05D006143 ORTHO05D007587 1.3e-106 391.0 457 50.3
Sc05g0007290 Simmondsia chinensis HOM05D006143 ORTHO05D007587 3.9e-106 389.4 480 47.7
Aqoxy4G00545 Aquilegia oxysepala HOM05D006143 ORTHO05D007587 6.6e-106 388.7 464 47.2
A01p10420 Brassica napus HOM05D006143 ORTHO05D007587 2.1e-104 383.6 484 47.1
PGSC0003DMG400010721 Solanum tuberosum HOM05D006143 ORTHO05D007587 2.1e-104 383.6 471 48.8
Psat7g118360 Pisum sativum HOM05D006143 ORTHO05D007587 6.8e-103 378.6 474 46.6
Hund23878 Selenicereus undatus HOM05D006143 ORTHO05D007587 6.8e-103 378.6 474 46.2
Haze_06321 Corylus avellana HOM05D006143 ORTHO05D007587 1.2e-102 377.9 470 48.7
PSO832G2207 Papaver somniferum HOM05D006143 ORTHO05D007587 1.5e-102 377.5 463 47.7
Phvul.003G056900 Phaseolus vulgaris HOM05D006143 ORTHO05D007587 2.6e-102 376.7 465 46.2
Glyma.07G203300 Glycine max HOM05D006143 ORTHO05D007587 7.5e-102 375.2 474 47.9
Sopen02g022240 Solanum pennellii HOM05D006143 ORTHO05D007587 2.9e-101 373.2 468 47.6
TPR.G16154 Trifolium pratense HOM05D006143 ORTHO05D007587 4.1e-100 369.4 472 44.9
PGR042G3042 Punica granatum HOM05D006143 ORTHO05D007587 5.4e-100 369.0 461 46.9
Migut.M01078 Erythranthe guttata HOM05D006143 ORTHO05D007587 2.7e-99 366.7 469 46.1
ECA234G2393 Erigeron canadensis HOM05D006143 ORTHO05D007587 4.6e-99 365.9 465 45.4
Peaxi162Scf00875g00320 Petunia axillaris HOM05D006143 ORTHO05D007587 4.6e-99 365.9 484 45.0
Glyma.13G172400 Glycine max HOM05D006143 ORTHO05D007587 6.0e-99 365.5 468 46.2
DCAR_007976 Daucus carota HOM05D006143 ORTHO05D007587 7.8e-99 365.2 469 46.1
Lsat_1_v5_gn_4_50941 Lactuca sativa HOM05D006143 ORTHO05D007587 6.6e-98 362.1 492 44.5
Lalb_Chr16g0384181 Lupinus albus HOM05D006143 ORTHO05D007587 6.6e-98 362.1 477 45.3
Solyc02g077320.4 Solanum lycopersicum HOM05D006143 ORTHO05D007587 1.9e-97 360.5 461 47.1
arahy.Tifrunner.gnm1.ann1.W3DLTW Arachis hypogaea HOM05D006143 ORTHO05D007587 5.6e-97 359.0 479 44.1
Lj4g0027541 Lotus japonicus HOM05D006143 ORTHO05D007587 1.6e-96 357.5 475 44.6
PSO210G3197 Papaver somniferum HOM05D006143 ORTHO05D007587 2.1e-96 357.1 464 46.8
Gohir.A10G029200 Gossypium hirsutum HOM05D006143 ORTHO05D007587 2.8e-96 356.7 430 47.2
arahy.Tifrunner.gnm1.ann1.VAEI8B Arachis hypogaea HOM05D006143 ORTHO05D007587 1.4e-95 354.4 485 43.7
EL10Ac8g20474 Beta vulgaris HOM05D006143 ORTHO05D007587 1.4e-95 354.4 472 43.2
Ca_26041_v3 Cicer arietinum L. HOM05D006143 ORTHO05D007587 1.4e-95 354.4 441 46.3
Medtr6g039570 Medicago truncatula HOM05D006143 ORTHO05D007587 3.1e-95 353.2 456 46.1
Oeu045072.2 Olea europaea HOM05D006143 ORTHO05D007587 5.2e-95 352.4 463 43.8
Medtr4g087975 Medicago truncatula HOM05D006143 ORTHO05D007587 2.6e-94 350.1 477 45.1
AUR62014918 Chenopodium quinoa HOM05D006143 ORTHO05D007587 4.4e-94 349.4 465 42.2
MBI07_g06435_MAGBIO Magnolia biondii HOM05D006143 ORTHO05D007587 4.4e-94 349.4 444 44.8
HanXRQChr11g0327231 Helianthus annuus HOM05D006143 ORTHO05D007587 1.3e-93 347.8 459 45.3
Sabra11G0042500 Salix brachista HOM05D006143 ORTHO05D007587 3.8e-93 346.3 443 47.6
Cc02_g14290 Coffea canephora HOM05D006143 ORTHO05D007587 1.1e-92 344.7 463 42.8
Sed0020086 Sechium edule HOM05D006143 ORTHO05D007587 5.4e-92 342.4 412 48.3
Ah.01g004290 Amaranthus hybridus HOM05D006143 ORTHO05D007587 7.1e-92 342.0 465 41.7
CsaV3_1G012630 Cucumis sativus L. HOM05D006143 ORTHO05D007587 4.6e-91 339.3 346 54.6
TAR626G0253 Trochodendron aralioides HOM05D006143 ORTHO05D007587 4.6e-91 339.3 339 53.7
Os02g0312800 Oryza sativa ssp. japonica HOM05D006143 ORTHO05D007587 1.6e-88 330.9 462 41.3
Actinidia39490 Actinidia chinensis HOM05D006143 ORTHO05D007587 2.8e-88 330.1 474 44.7
FvH4_3g08270 Fragaria vesca HOM05D006143 ORTHO05D007587 4.7e-88 329.3 351 52.7
Nitab4.5_0011727g0010 Nicotiana tabacum HOM05D006143 ORTHO05D007587 1.8e-87 327.4 450 44.0
Zm00001eb206790 Zea mays HOM05D006143 ORTHO05D007587 9.9e-86 321.6 464 40.3
AUR62031125 Chenopodium quinoa HOM05D006143 ORTHO05D007587 2.9e-85 320.1 422 43.1
Nitab4.5_0000376g0080 Nicotiana tabacum HOM05D006143 ORTHO05D007587 5.1e-82 309.3 435 42.8
ATR0602G028 Amborella trichopoda HOM05D006143 ORTHO05D007587 3.8e-77 293.1 462 37.9
Cfa000554 Carpinus fangiana HOM05D006143 ORTHO05D007587 2.4e-76 290.4 310 54.2
Eucgr.E02653 Eucalyptus grandis HOM05D006143 ORTHO05D007587 7.1e-76 288.9 305 51.8
SGA_v2.0_scaffold16G07658 Striga asiatica HOM05D006143 ORTHO05D007587 3.3e-73 280.0 447 38.9
VMungo0251G1209 Vigna mungo HOM05D006143 ORTHO05D007587 3.1e-71 273.5 324 45.7
CDE02G0230 Ceratophyllum demersum HOM05D006143 ORTHO05D007587 1.2e-67 261.5 455 35.8
unitig_699.g19338 Utricularia gibba HOM05D006143 ORTHO05D007587 4.8e-64 249.6 443 37.5
HPP92_003901 Vanilla planifolia HOM05D006143 ORTHO05D007587 2.0e-54 217.6 326 43.9
RcHm_v2.0_Chr3g0476981 Rosa chinensis HOM05D006143 ORTHO05D007587 4.1e-47 193.4 347 37.5
Rhsim02G0153000 Rhododendron simsii HOM05D006143 ORTHO05D007587 6.1e-43 179.5 180 51.7
arahy.Tifrunner.gnm1.ann1.74Q5DQ Arachis hypogaea HOM05D006143 ORTHO05D007587 3.7e-32 143.7 145 47.6
MD10G1285900 Malus domestica HOM05D006143 ORTHO05D007587 1.4e-31 141.7 233 39.1
arahy.Tifrunner.gnm1.ann1.VQL787 Arachis hypogaea HOM05D006143 ORTHO05D007587 2.5e-28 131.0 138 48.6
arahy.Tifrunner.gnm1.ann1.RYY8E4 Arachis hypogaea HOM05D006143 ORTHO05D007587 2.1e-27 127.9 138 47.8
arahy.Tifrunner.gnm1.ann1.Y1II92 Arachis hypogaea HOM05D006143 ORTHO05D007587 2.1e-27 127.9 138 47.8
TPR.G16261 Trifolium pratense HOM05D006143 ORTHO05D007587 4.4e-25 120.2 211 36.5
arahy.Tifrunner.gnm1.ann1.6ZT1I9 Arachis hypogaea HOM05D006143 ORTHO05D007587 1.2e-22 112.1 120 48.3
SEGI_30740 Sequoiadendron giganteum HOM05D006143 ORTHO05D007587 4.5e-22 110.2 159 35.8
SEGI_37534 Sequoiadendron giganteum HOM05D006143 ORTHO05D007587 4.5e-22 110.2 159 35.8
VMungo0251G1903 Vigna mungo HOM05D006143 ORTHO05D007587 5.0e-21 106.7 132 47.7
HPP92_003867 Vanilla planifolia HOM05D006143 ORTHO05D007587 6.5e-21 106.3 257 35.4
arahy.Tifrunner.gnm1.ann1.Y2C9I0 Arachis hypogaea HOM05D006143 ORTHO05D007587 4.2e-20 103.6 130 43.8
Nn4g22609 Nelumbo nucifera HOM05D006143 ORTHO05D007587 1.6e-19 101.7 92 59.8
Mapoly0071s0015 Marchantia polymorpha HOM05D006143 ORTHO05D007587 4.7e-19 100.1 496 24.4
AagrBONN_evm.TU.Sc2ySwM_344.2178 Anthoceros agrestis HOM05D006143 ORTHO05D007587 4.4e-17 93.6 461 23.6
Pp3c13_1090 Physcomitrium patens HOM05D006143 ORTHO05D007587 2.7e-14 84.3 441 22.4
MD10G1285800 Malus domestica HOM05D006143 ORTHO05D007587 8.6e-13 79.3 55 65.5
MD10G1285700 Malus domestica HOM05D006143 ORTHO05D007587 9.5e-12 75.9 74 51.4
SHI28510 Sapria himalayana HOM05D006143 ORTHO05D007587 2.1e-11 74.7 84 46.4
SEGI_26564 Sequoiadendron giganteum HOM05D001915 ORTHO05D000007 1.2e-09 68.9 112 33.9
HPP92_003900 Vanilla planifolia HOM05D006143 ORTHO05D007587 3.2e-07 60.8 98 33.7
SMO117G0244 Selaginella moellendorffii HOM05D006143 ORTHO05D007587 1.2e-06 58.9 89 38.2


User provided reference genes

Program Settings