Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc62.164 Carica papaya HOM05D003534 ORTHO05D004911 4.6e-63 244.6 140 100.0
Cpa.g.sc62.168 Carica papaya HOM05D003534 ORTHO05D015840 4.6e-63 244.6 140 100.0
Duzib132G0318 Durio zibethinus HOM05D003534 ORTHO05D004911 2.3e-46 189.1 138 81.9
Thecc.02G083000 Theobroma cacao HOM05D003534 ORTHO05D004911 5.2e-43 177.9 138 79.7
TAR376G0939 Trochodendron aralioides HOM05D003534 ORTHO05D004911 6.9e-43 177.6 141 75.2
Ciclev10027844m.g Citrus clementina HOM05D003534 ORTHO05D004911 1.2e-42 176.8 138 78.3
CiPaw.05G066400 Carya illinoinensis HOM05D003534 ORTHO05D004911 2.0e-42 176.0 135 80.7
Gohir.D02G216500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 3.4e-42 175.3 138 79.0
Eucgr.I01280 Eucalyptus grandis HOM05D003534 ORTHO05D004911 4.4e-42 174.9 124 80.6
Manes.04G089300 Manihot esculenta HOM05D003534 ORTHO05D004911 2.9e-41 172.2 112 86.6
Cpa.g.sc62.167 Carica papaya HOM05D003534 ORTHO05D015840 3.8e-41 171.8 120 84.2
Cpa.g.sc62.166 Carica papaya HOM05D003534 ORTHO05D015840 4.9e-41 171.4 113 88.5
Cc02_g17370 Coffea canephora HOM05D003534 ORTHO05D004911 6.4e-41 171.0 137 77.4
ClCG11G004310 Citrullus lanatus HOM05D003534 ORTHO05D004911 8.4e-41 170.6 123 80.5
MELO3C023306.2 Cucumis melo HOM05D003534 ORTHO05D004911 1.1e-40 170.2 123 80.5
Sed0008343 Sechium edule HOM05D003534 ORTHO05D004911 1.1e-40 170.2 122 80.3
MBI16_g05475_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D004911 1.4e-40 169.9 118 82.2
Potri.009G118400 Populus trichocarpa HOM05D003534 ORTHO05D004911 1.4e-40 169.9 140 75.7
COL.COLO4_25955 Corchorus olitorius HOM05D003534 ORTHO05D015840 2.4e-40 169.1 138 76.1
CSS0034094 Camellia sinensis var. sinensis HOM05D003534 ORTHO05D004911 4.2e-40 168.3 110 86.4
CsaV3_2G014840 Cucumis sativus L. HOM05D003534 ORTHO05D004911 7.1e-40 167.5 131 76.3
Phvul.011G044300 Phaseolus vulgaris HOM05D003534 ORTHO05D004911 7.1e-40 167.5 112 84.8
VMungo1127G1107 Vigna mungo HOM05D003534 ORTHO05D004911 7.1e-40 167.5 109 87.2
THA.LOC104807735 Tarenaya hassleriana HOM05D003534 ORTHO05D004911 9.3e-40 167.2 112 85.7
PGR142G3854 Punica granatum HOM05D003534 ORTHO05D004911 2.1e-39 166.0 109 86.2
Actinidia00534 Actinidia chinensis HOM05D003534 ORTHO05D004911 2.7e-39 165.6 131 77.1
Gorai.005G244600 Gossypium raimondii HOM05D003534 ORTHO05D004911 3.5e-39 165.2 140 75.7
Glyma.11G116800 Glycine max HOM05D003534 ORTHO05D004911 4.6e-39 164.9 114 82.5
arahy.Tifrunner.gnm1.ann1.32LR34 Arachis hypogaea HOM05D003534 ORTHO05D004911 6.0e-39 164.5 137 75.9
Nn3g20273 Nelumbo nucifera HOM05D003534 ORTHO05D004911 6.0e-39 164.5 122 79.5
RcHm_v2.0_Chr6g0265021 Rosa chinensis HOM05D003534 ORTHO05D004911 7.8e-39 164.1 127 78.0
arahy.Tifrunner.gnm1.ann1.HU7T3D Arachis hypogaea HOM05D003534 ORTHO05D004911 1.3e-38 163.3 137 75.2
Cpa.g.sc62.165 Carica papaya HOM05D003534 ORTHO05D015840 1.7e-38 162.9 105 88.6
Aqoxy3G00729 Aquilegia oxysepala HOM05D003534 ORTHO05D004911 3.9e-38 161.8 138 71.7
Glyma.12G042600 Glycine max HOM05D003534 ORTHO05D004911 3.9e-38 161.8 114 81.6
Gohir.A03G195500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 3.9e-38 161.8 138 73.2
Haze_02400 Corylus avellana HOM05D003534 ORTHO05D004911 5.1e-38 161.4 144 73.6
MSTRG.27693 Avicennia marina HOM05D003534 ORTHO05D004911 6.6e-38 161.0 140 73.6
Lalb_Chr03g0025601 Lupinus albus HOM05D003534 ORTHO05D004911 6.6e-38 161.0 113 83.2
Nitab4.5_0000167g0310 Nicotiana tabacum HOM05D003534 ORTHO05D004911 1.1e-37 160.2 135 75.6
Sc22g0003200 Simmondsia chinensis HOM05D003534 ORTHO05D004911 1.5e-37 159.8 110 81.8
PGSC0003DMG400031553 Solanum tuberosum HOM05D003534 ORTHO05D004911 1.5e-37 159.8 116 80.2
ATR0579G086 Amborella trichopoda HOM05D003534 ORTHO05D015840 2.5e-37 159.1 112 78.6
Nn8g40768 Nelumbo nucifera HOM05D003534 ORTHO05D004911 3.3e-37 158.7 108 82.4
SGA_v2.0_scaffold58G20518 Striga asiatica HOM05D003534 ORTHO05D004911 3.3e-37 158.7 135 72.6
Cfa004983 Carpinus fangiana HOM05D003534 ORTHO05D004911 4.3e-37 158.3 124 79.8
Lalb_Chr01g0002481 Lupinus albus HOM05D003534 ORTHO05D004911 4.3e-37 158.3 138 74.6
Nitab4.5_0003010g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 4.3e-37 158.3 137 74.5
SalBow3G2606 Salvia bowleyana HOM05D003534 ORTHO05D004911 4.3e-37 158.3 134 75.4
vmacro02092 Vaccinium macrocarpon HOM05D003534 ORTHO05D004911 4.3e-37 158.3 126 76.2
Hma1.2p1_0617F.1_g190140 Hydrangea macrophylla HOM05D003534 ORTHO05D004911 5.6e-37 157.9 123 77.2
Sabra09G0090700 Salix brachista HOM05D003534 ORTHO05D004911 7.3e-37 157.5 114 85.1
TWI79G0037 Tripterygium wilfordii HOM05D003534 ORTHO05D004911 9.6e-37 157.1 105 82.9
unitig_21.g20784 Utricularia gibba HOM05D003534 ORTHO05D004911 1.6e-36 156.4 113 81.4
ATR0568G003 Amborella trichopoda HOM05D003534 ORTHO05D004911 2.1e-36 156.0 112 77.7
MD10G1073000 Malus domestica HOM05D003534 ORTHO05D004911 2.1e-36 156.0 123 79.7
Sopen10g016790 Solanum pennellii HOM05D003534 ORTHO05D004911 2.1e-36 156.0 116 78.4
THA.LOC104804130 Tarenaya hassleriana HOM05D003534 ORTHO05D004911 2.1e-36 156.0 105 82.9
QL11p044502 Quercus lobata HOM05D003534 ORTHO05D004911 2.8e-36 155.6 111 82.9
Lj4C693T2 Lonicera japonica HOM05D003534 ORTHO05D004911 3.6e-36 155.2 114 81.6
Nitab4.5_0007066g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 3.6e-36 155.2 136 74.3
FvH4_2g09160 Fragaria vesca HOM05D003534 ORTHO05D004911 4.8e-36 154.8 118 78.8
FAN24G0084 Fragaria x ananassa HOM05D003534 ORTHO05D004911 4.8e-36 154.8 118 78.8
FAN27G1894 Fragaria x ananassa HOM05D003534 ORTHO05D004911 4.8e-36 154.8 118 78.8
Oeu011084.1 Olea europaea HOM05D003534 ORTHO05D004911 4.8e-36 154.8 111 81.1
CDE08G0557 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 1.1e-35 153.7 146 65.1
SEGI_04005 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 1.4e-35 153.3 139 68.3
Migut.N01247 Erythranthe guttata HOM05D003534 ORTHO05D004911 1.8e-35 152.9 109 80.7
MD05G1064300 Malus domestica HOM05D003534 ORTHO05D004911 1.8e-35 152.9 105 82.9
Peaxi162Scf00314g00224 Petunia axillaris HOM05D003534 ORTHO05D004911 1.8e-35 152.9 132 73.5
FAN15G3506 Fragaria x ananassa HOM05D003534 ORTHO05D004911 2.4e-35 152.5 114 78.9
Prupe.8G094400 Prunus persica HOM05D003534 ORTHO05D004911 4.0e-35 151.8 137 71.5
FAN20G2815 Fragaria x ananassa HOM05D003534 ORTHO05D004911 5.3e-35 151.4 114 77.2
Nitab4.5_0000231g0480 Nicotiana tabacum HOM05D003534 ORTHO05D004911 5.3e-35 151.4 136 73.5
Psat7g184360 Pisum sativum HOM05D003534 ORTHO05D004911 5.3e-35 151.4 151 65.6
SEGI_39659 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 5.3e-35 151.4 137 68.6
Peaxi162Scf00391g00525 Petunia axillaris HOM05D003534 ORTHO05D004911 6.9e-35 151.0 135 73.3
HPP92_017536 Vanilla planifolia HOM05D003534 ORTHO05D004911 6.9e-35 151.0 117 71.8
PGSC0003DMG400020972 Solanum tuberosum HOM05D003534 ORTHO05D004911 9.0e-35 150.6 105 80.0
CANSAT01G2206 Cannabis sativa HOM05D003534 ORTHO05D004911 1.2e-34 150.2 137 70.1
Lj3g0020150 Lotus japonicus HOM05D003534 ORTHO05D004911 1.2e-34 150.2 141 68.1
Medtr4g078640 Medicago truncatula HOM05D003534 ORTHO05D004911 1.5e-34 149.8 110 78.2
Hund20114 Selenicereus undatus HOM05D003534 ORTHO05D004911 2.0e-34 149.4 139 68.3
CAN.G616.17 Capsicum annuum HOM05D003534 ORTHO05D015840 2.6e-34 149.1 133 73.7
Aa31sc389G50 Aethionema arabicum HOM05D003534 ORTHO05D004911 9.9e-34 147.1 138 69.6
Rhsim11G0178800 Rhododendron simsii HOM05D003534 ORTHO05D004911 1.3e-33 146.7 100 83.0
PSO675G2831 Papaver somniferum HOM05D003534 ORTHO05D004911 1.7e-33 146.4 112 76.8
Zm00001eb296160 Zea mays HOM05D003534 ORTHO05D004911 1.7e-33 146.4 107 73.8
Carub.0007s1523 Capsella rubella HOM05D003534 ORTHO05D004911 2.9e-33 145.6 136 67.6
ECA234G0458 Erigeron canadensis HOM05D003534 ORTHO05D004911 2.9e-33 145.6 139 66.9
HanXRQChr12g0376181 Helianthus annuus HOM05D003534 ORTHO05D004911 4.9e-33 144.8 124 71.0
PGSC0003DMG400009279 Solanum tuberosum HOM05D003534 ORTHO05D004911 4.9e-33 144.8 117 76.1
AL7G27310 Arabidopsis lyrata HOM05D003534 ORTHO05D004911 8.4e-33 144.1 114 74.6
Ca_20885_v3 Cicer arietinum L. HOM05D003534 ORTHO05D004911 8.4e-33 144.1 142 66.2
Zm00001eb343980 Zea mays HOM05D003534 ORTHO05D004911 8.4e-33 144.1 108 73.1
Oeu029149.3 Olea europaea HOM05D003534 ORTHO05D004911 3.2e-32 142.1 116 74.1
AT4G25730 Arabidopsis thaliana HOM05D003534 ORTHO05D004911 4.2e-32 141.7 114 73.7
CAN.G259.5 Capsicum annuum HOM05D003534 ORTHO05D004911 4.2e-32 141.7 136 66.9
Sopen11g010760 Solanum pennellii HOM05D003534 ORTHO05D004911 4.2e-32 141.7 113 75.2
AL6G48970 Arabidopsis lyrata HOM05D003534 ORTHO05D004911 5.4e-32 141.4 113 74.3
Solyc11g020820.2 Solanum lycopersicum HOM05D003534 ORTHO05D004911 5.4e-32 141.4 113 75.2
PSO541G3604 Papaver somniferum HOM05D003534 ORTHO05D004911 9.3e-32 140.6 121 71.1
Solyc11g020810.2 Solanum lycopersicum HOM05D003534 ORTHO05D004911 9.3e-32 140.6 136 69.1
Sopen11g010770 Solanum pennellii HOM05D003534 ORTHO05D004911 9.3e-32 140.6 136 69.1
Sp7g23760 Schrenkiella parvula HOM05D003534 ORTHO05D004911 1.6e-31 139.8 113 73.5
CARHR233180 Cardamine hirsuta HOM05D003534 ORTHO05D004911 2.1e-31 139.4 136 66.2
DCAR_001567 Daucus carota HOM05D003534 ORTHO05D004911 2.7e-31 139.0 140 67.1
AUR62037043 Chenopodium quinoa HOM05D003534 ORTHO05D004911 3.5e-31 138.7 110 73.6
Os05g0567400 Oryza sativa ssp. japonica HOM05D003534 ORTHO05D004911 3.5e-31 138.7 134 63.4
AUR62041501 Chenopodium quinoa HOM05D003534 ORTHO05D004911 1.0e-30 137.1 110 72.7
AUR62038347 Chenopodium quinoa HOM05D003534 ORTHO05D004911 1.8e-30 136.3 116 71.6
Thhalv10024417m.g Eutrema salsugineum HOM05D003534 ORTHO05D004911 1.8e-30 136.3 109 73.4
CDE06G2567 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 2.3e-30 136.0 136 63.2
EL10Ac2g03296 Beta vulgaris HOM05D003534 ORTHO05D004911 6.7e-30 134.4 109 72.5
Nitab4.5_0006725g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 2.5e-29 132.5 87 85.1
Medtr4g070380 Medicago truncatula HOM05D003534 ORTHO05D004911 3.3e-29 132.1 129 64.3
BcaB05g23691 Brassica carinata HOM05D003534 ORTHO05D004911 5.6e-29 131.3 113 70.8
PSO675G9373 Papaver somniferum HOM05D003534 ORTHO05D004911 2.8e-28 129.0 102 72.5
Pp3c2_28180 Physcomitrium patens HOM05D003534 ORTHO05D004911 1.8e-27 126.3 145 56.6
Pp3c2_28182 Physcomitrium patens HOM05D003534 ORTHO05D004911 1.8e-27 126.3 145 56.6
BcaC07g38209 Brassica carinata HOM05D003534 ORTHO05D004911 3.1e-27 125.6 109 69.7
BolC8t48630H Brassica oleracea HOM05D003534 ORTHO05D004911 3.1e-27 125.6 109 69.7
CANSAT35G1090 Cannabis sativa HOM05D003534 ORTHO05D004911 3.1e-27 125.6 128 61.7
SMO361G0155 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 1.2e-26 123.6 111 63.1
SMO361G0409 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 1.2e-26 123.6 111 63.1
C08p09620 Brassica napus HOM05D003534 ORTHO05D004911 2.0e-26 122.9 111 68.5
AagrBONN_evm.TU.Sc2ySwM_228.187 Anthoceros agrestis HOM05D003534 ORTHO05D004911 1.7e-25 119.8 119 61.3
A03p56220 Brassica napus HOM05D003534 ORTHO05D004911 1.7e-25 119.8 96 74.0
C07p54510 Brassica napus HOM05D003534 ORTHO05D004911 1.7e-25 119.8 96 74.0
BolC7t45937H Brassica oleracea HOM05D003534 ORTHO05D004911 1.7e-25 119.8 96 74.0
BraA03t14692Z Brassica rapa HOM05D003534 ORTHO05D004911 1.7e-25 119.8 96 74.0
BraA08t34053Z Brassica rapa HOM05D003534 ORTHO05D004911 6.4e-25 117.9 124 64.5
Lj5A195G74 Lonicera japonica HOM05D003534 ORTHO05D015840 8.4e-25 117.5 80 83.8
Hma1.2p1_2192F.1_g316723 Hydrangea macrophylla HOM05D003534 ORTHO05D000126 3.2e-24 115.5 79 81.0
Hma1.2p1_2192F.1_g316730 Hydrangea macrophylla HOM05D003534 ORTHO05D000126 3.2e-24 115.5 79 81.0
Hma1.2p1_2192F.1_g316746 Hydrangea macrophylla HOM05D003534 ORTHO05D000126 3.2e-24 115.5 79 81.0
Hma1.2p1_2496F.1_g323320 Hydrangea macrophylla HOM05D003534 ORTHO05D015840 3.2e-24 115.5 79 79.7
Hma1.2p1_2496F.1_g323326 Hydrangea macrophylla HOM05D003534 ORTHO05D000126 3.2e-24 115.5 79 81.0
Mapoly0151s0007 Marchantia polymorpha HOM05D003534 ORTHO05D004911 5.5e-24 114.8 147 54.4
Carub.0006s3329 Capsella rubella HOM05D003534 ORTHO05D004911 7.1e-24 114.4 113 66.4
TPR.G22546 Trifolium pratense HOM05D003534 ORTHO05D004911 2.1e-23 112.8 78 80.8
SMO361G0029 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 2.7e-23 112.5 101 63.4
SMO361G0744 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 4.8e-20 101.7 101 60.4
BcaC06g32787 Brassica carinata HOM05D003534 ORTHO05D004911 5.8e-18 94.7 96 62.5
CBR_g6403 Chara braunii HOM05D003534 ORTHO05D004911 1.4e-16 90.1 135 49.6
Solyc10g046930.3 Solanum lycopersicum HOM05D003534 ORTHO05D004911 2.5e-16 89.4 116 56.9
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 5.5e-16 88.2 68 72.1
Sopen10g016730 Solanum pennellii HOM05D003534 ORTHO05D004911 1.2e-15 87.0 56 87.5
BcaC03g16210 Brassica carinata HOM05D003534 ORTHO05D015840 4.3e-13 78.6 113 47.8
Atru.chr5.3043 Acer truncatum HOM05D003534 ORTHO05D004911 3.8e-09 65.5 151 43.0
Haze_26769 Corylus avellana HOM05D003534 ORTHO05D004911 2.5e-08 62.8 125 43.2
Cre12.g529500 Chlamydomonas reinhardtii HOM05D003534 ORTHO05D004911 4.6e-07 58.5 125 42.4
QL11p044525 Quercus lobata HOM05D003534 ORTHO05D015840 1.3e-06 57.0 42 76.2


User provided reference genes

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