Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc62.165 Carica papaya HOM05D003534 ORTHO05D015840 8.9e-97 357.1 198 100.0
Cpa.g.sc62.164 Carica papaya HOM05D003534 ORTHO05D004911 5.7e-59 231.5 233 63.5
Cpa.g.sc62.166 Carica papaya HOM05D003534 ORTHO05D015840 7.4e-59 231.1 216 68.5
Manes.04G089300 Manihot esculenta HOM05D003534 ORTHO05D004911 6.3e-42 174.9 234 50.4
Duzib132G0318 Durio zibethinus HOM05D003534 ORTHO05D004911 1.4e-41 173.7 230 53.9
Lalb_Chr01g0002481 Lupinus albus HOM05D003534 ORTHO05D004911 1.2e-40 170.6 221 53.8
COL.COLO4_25955 Corchorus olitorius HOM05D003534 ORTHO05D015840 1.5e-40 170.2 208 55.8
Cpa.g.sc62.168 Carica papaya HOM05D003534 ORTHO05D015840 2.9e-39 166.0 105 88.6
VMungo1127G1107 Vigna mungo HOM05D003534 ORTHO05D004911 6.5e-39 164.9 220 53.2
Glyma.11G116800 Glycine max HOM05D003534 ORTHO05D004911 1.4e-38 163.7 219 50.7
Eucgr.I01280 Eucalyptus grandis HOM05D003534 ORTHO05D004911 2.5e-38 162.9 235 48.5
Glyma.12G042600 Glycine max HOM05D003534 ORTHO05D004911 2.5e-38 162.9 220 50.9
Gohir.A03G195500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 5.5e-38 161.8 209 52.6
QL11p044502 Quercus lobata HOM05D003534 ORTHO05D004911 1.2e-37 160.6 236 49.2
Gorai.005G244600 Gossypium raimondii HOM05D003534 ORTHO05D004911 1.6e-37 160.2 209 52.2
Lalb_Chr03g0025601 Lupinus albus HOM05D003534 ORTHO05D004911 2.1e-37 159.8 222 51.4
Gohir.D02G216500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 2.7e-37 159.5 227 49.8
Phvul.011G044300 Phaseolus vulgaris HOM05D003534 ORTHO05D004911 2.7e-37 159.5 205 54.1
THA.LOC104807735 Tarenaya hassleriana HOM05D003534 ORTHO05D004911 2.7e-37 159.5 242 47.9
arahy.Tifrunner.gnm1.ann1.32LR34 Arachis hypogaea HOM05D003534 ORTHO05D004911 6.1e-37 158.3 221 53.4
arahy.Tifrunner.gnm1.ann1.HU7T3D Arachis hypogaea HOM05D003534 ORTHO05D004911 6.1e-37 158.3 221 53.4
TAR376G0939 Trochodendron aralioides HOM05D003534 ORTHO05D004911 7.9e-37 157.9 233 48.5
Cpa.g.sc62.167 Carica papaya HOM05D003534 ORTHO05D015840 1.0e-36 157.5 105 86.7
Actinidia00534 Actinidia chinensis HOM05D003534 ORTHO05D004911 1.4e-36 157.1 235 50.2
vmacro02092 Vaccinium macrocarpon HOM05D003534 ORTHO05D004911 1.8e-36 156.8 220 50.0
Prupe.8G094400 Prunus persica HOM05D003534 ORTHO05D004911 2.3e-36 156.4 244 46.7
CiPaw.05G066400 Carya illinoinensis HOM05D003534 ORTHO05D004911 3.0e-36 156.0 237 48.1
CSS0034094 Camellia sinensis var. sinensis HOM05D003534 ORTHO05D004911 3.9e-36 155.6 211 50.7
Haze_02400 Corylus avellana HOM05D003534 ORTHO05D004911 3.9e-36 155.6 235 48.5
Nitab4.5_0003010g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 3.9e-36 155.6 203 57.1
Oeu011084.1 Olea europaea HOM05D003534 ORTHO05D004911 3.9e-36 155.6 221 49.8
PGR142G3854 Punica granatum HOM05D003534 ORTHO05D004911 3.9e-36 155.6 236 48.3
Hma1.2p1_0617F.1_g190140 Hydrangea macrophylla HOM05D003534 ORTHO05D004911 6.7e-36 154.8 252 47.6
Ciclev10027844m.g Citrus clementina HOM05D003534 ORTHO05D004911 8.8e-36 154.5 234 47.9
Thecc.02G083000 Theobroma cacao HOM05D003534 ORTHO05D004911 8.8e-36 154.5 231 50.6
TWI79G0037 Tripterygium wilfordii HOM05D003534 ORTHO05D004911 8.8e-36 154.5 232 48.3
Hund20114 Selenicereus undatus HOM05D003534 ORTHO05D004911 1.5e-35 153.7 237 47.3
Lj4C693T2 Lonicera japonica HOM05D003534 ORTHO05D004911 2.0e-35 153.3 200 53.0
RcHm_v2.0_Chr6g0265021 Rosa chinensis HOM05D003534 ORTHO05D004911 2.0e-35 153.3 246 48.8
MSTRG.27693 Avicennia marina HOM05D003534 ORTHO05D004911 2.6e-35 152.9 241 46.1
Nn8g40768 Nelumbo nucifera HOM05D003534 ORTHO05D004911 4.4e-35 152.1 204 52.0
MD10G1073000 Malus domestica HOM05D003534 ORTHO05D004911 7.4e-35 151.4 204 51.0
FvH4_2g09160 Fragaria vesca HOM05D003534 ORTHO05D004911 9.7e-35 151.0 227 49.8
FAN15G3506 Fragaria x ananassa HOM05D003534 ORTHO05D004911 9.7e-35 151.0 227 49.8
FAN24G0084 Fragaria x ananassa HOM05D003534 ORTHO05D004911 9.7e-35 151.0 227 49.8
FAN27G1894 Fragaria x ananassa HOM05D003534 ORTHO05D004911 9.7e-35 151.0 227 49.8
Nitab4.5_0000167g0310 Nicotiana tabacum HOM05D003534 ORTHO05D004911 1.3e-34 150.6 203 55.7
PGSC0003DMG400031553 Solanum tuberosum HOM05D003534 ORTHO05D004911 1.3e-34 150.6 217 47.9
Cc02_g17370 Coffea canephora HOM05D003534 ORTHO05D004911 1.7e-34 150.2 222 49.1
Nn3g20273 Nelumbo nucifera HOM05D003534 ORTHO05D004911 2.2e-34 149.8 211 49.3
FAN20G2815 Fragaria x ananassa HOM05D003534 ORTHO05D004911 3.7e-34 149.1 227 48.9
MD05G1064300 Malus domestica HOM05D003534 ORTHO05D004911 3.7e-34 149.1 204 49.5
SalBow3G2606 Salvia bowleyana HOM05D003534 ORTHO05D004911 3.7e-34 149.1 236 47.5
unitig_21.g20784 Utricularia gibba HOM05D003534 ORTHO05D004911 3.7e-34 149.1 203 50.7
Solyc11g020820.2 Solanum lycopersicum HOM05D003534 ORTHO05D004911 4.8e-34 148.7 203 54.2
Potri.009G118400 Populus trichocarpa HOM05D003534 ORTHO05D004911 1.1e-33 147.5 236 48.7
MBI16_g05475_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D004911 1.8e-33 146.7 233 44.6
Sed0008343 Sechium edule HOM05D003534 ORTHO05D004911 2.4e-33 146.4 238 45.4
Sc22g0003200 Simmondsia chinensis HOM05D003534 ORTHO05D004911 2.4e-33 146.4 228 47.4
THA.LOC104804130 Tarenaya hassleriana HOM05D003534 ORTHO05D004911 2.4e-33 146.4 203 51.7
Cfa004983 Carpinus fangiana HOM05D003534 ORTHO05D004911 3.1e-33 146.0 235 46.8
SGA_v2.0_scaffold58G20518 Striga asiatica HOM05D003534 ORTHO05D004911 4.1e-33 145.6 105 77.1
MELO3C023306.2 Cucumis melo HOM05D003534 ORTHO05D004911 5.3e-33 145.2 203 51.2
Sabra09G0090700 Salix brachista HOM05D003534 ORTHO05D004911 7.0e-33 144.8 242 47.5
Sopen10g016790 Solanum pennellii HOM05D003534 ORTHO05D004911 7.0e-33 144.8 204 49.5
ClCG11G004310 Citrullus lanatus HOM05D003534 ORTHO05D004911 9.1e-33 144.4 220 49.5
Peaxi162Scf00314g00224 Petunia axillaris HOM05D003534 ORTHO05D004911 1.2e-32 144.1 202 49.5
PGSC0003DMG400020972 Solanum tuberosum HOM05D003534 ORTHO05D004911 1.2e-32 144.1 217 47.9
Solyc11g020810.2 Solanum lycopersicum HOM05D003534 ORTHO05D004911 1.6e-32 143.7 228 49.1
Sopen11g010770 Solanum pennellii HOM05D003534 ORTHO05D004911 1.6e-32 143.7 228 49.1
CAN.G259.5 Capsicum annuum HOM05D003534 ORTHO05D004911 2.0e-32 143.3 203 53.2
CsaV3_2G014840 Cucumis sativus L. HOM05D003534 ORTHO05D004911 2.6e-32 142.9 199 51.8
Psat7g184360 Pisum sativum HOM05D003534 ORTHO05D004911 2.6e-32 142.9 137 65.0
Peaxi162Scf00391g00525 Petunia axillaris HOM05D003534 ORTHO05D004911 3.5e-32 142.5 202 52.0
Nitab4.5_0007066g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 4.5e-32 142.1 217 48.4
Aqoxy3G00729 Aquilegia oxysepala HOM05D003534 ORTHO05D004911 5.9e-32 141.7 198 50.0
CAN.G616.17 Capsicum annuum HOM05D003534 ORTHO05D015840 5.9e-32 141.7 219 51.1
Ca_20885_v3 Cicer arietinum L. HOM05D003534 ORTHO05D004911 7.7e-32 141.4 218 48.2
Aa31sc389G50 Aethionema arabicum HOM05D003534 ORTHO05D004911 1.0e-31 141.0 233 45.5
Migut.N01247 Erythranthe guttata HOM05D003534 ORTHO05D004911 1.0e-31 141.0 230 43.9
Oeu029149.3 Olea europaea HOM05D003534 ORTHO05D004911 1.3e-31 140.6 236 45.3
ECA234G0458 Erigeron canadensis HOM05D003534 ORTHO05D004911 1.7e-31 140.2 216 45.4
Medtr4g078640 Medicago truncatula HOM05D003534 ORTHO05D004911 1.7e-31 140.2 197 51.3
Rhsim11G0178800 Rhododendron simsii HOM05D003534 ORTHO05D004911 2.9e-31 139.4 239 43.9
ATR0568G003 Amborella trichopoda HOM05D003534 ORTHO05D004911 3.8e-31 139.0 200 48.5
Sopen11g010760 Solanum pennellii HOM05D003534 ORTHO05D004911 3.8e-31 139.0 228 46.5
PSO675G2831 Papaver somniferum HOM05D003534 ORTHO05D004911 5.0e-31 138.7 248 43.5
HanXRQChr12g0376181 Helianthus annuus HOM05D003534 ORTHO05D004911 6.5e-31 138.3 237 42.6
Nitab4.5_0000231g0480 Nicotiana tabacum HOM05D003534 ORTHO05D004911 6.5e-31 138.3 224 48.7
ATR0579G086 Amborella trichopoda HOM05D003534 ORTHO05D015840 1.1e-30 137.5 105 71.4
HPP92_017536 Vanilla planifolia HOM05D003534 ORTHO05D004911 1.1e-30 137.5 137 56.9
CANSAT01G2206 Cannabis sativa HOM05D003534 ORTHO05D004911 1.9e-30 136.7 200 48.5
Lj3g0020150 Lotus japonicus HOM05D003534 ORTHO05D004911 2.5e-30 136.3 218 47.7
PGSC0003DMG400009279 Solanum tuberosum HOM05D003534 ORTHO05D004911 2.5e-30 136.3 228 48.7
PSO541G3604 Papaver somniferum HOM05D003534 ORTHO05D004911 4.2e-30 135.6 248 43.1
Medtr4g070380 Medicago truncatula HOM05D003534 ORTHO05D004911 7.2e-30 134.8 218 44.0
SEGI_39659 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 9.4e-30 134.4 198 46.5
AUR62038347 Chenopodium quinoa HOM05D003534 ORTHO05D004911 1.2e-29 134.0 232 44.0
AUR62037043 Chenopodium quinoa HOM05D003534 ORTHO05D004911 2.1e-29 133.3 235 43.4
DCAR_001567 Daucus carota HOM05D003534 ORTHO05D004911 3.6e-29 132.5 229 43.7
SEGI_04005 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 4.7e-29 132.1 198 47.5
CDE08G0557 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 6.1e-29 131.7 222 42.3
EL10Ac2g03296 Beta vulgaris HOM05D003534 ORTHO05D004911 4.0e-28 129.0 229 43.7
AL6G48970 Arabidopsis lyrata HOM05D003534 ORTHO05D004911 5.2e-28 128.6 233 44.2
CDE06G2567 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 6.7e-28 128.3 210 42.9
AUR62041501 Chenopodium quinoa HOM05D003534 ORTHO05D004911 6.7e-28 128.3 234 42.3
Zm00001eb296160 Zea mays HOM05D003534 ORTHO05D004911 2.0e-27 126.7 104 65.4
BcaB05g23691 Brassica carinata HOM05D003534 ORTHO05D004911 3.3e-27 125.9 194 45.4
AL7G27310 Arabidopsis lyrata HOM05D003534 ORTHO05D004911 7.5e-27 124.8 106 67.9
Carub.0007s1523 Capsella rubella HOM05D003534 ORTHO05D004911 7.5e-27 124.8 106 67.9
Os05g0567400 Oryza sativa ssp. japonica HOM05D003534 ORTHO05D004911 9.7e-27 124.4 203 43.3
Zm00001eb343980 Zea mays HOM05D003534 ORTHO05D004911 2.2e-26 123.2 105 63.8
AT4G25730 Arabidopsis thaliana HOM05D003534 ORTHO05D004911 3.7e-26 122.5 106 67.0
CARHR233180 Cardamine hirsuta HOM05D003534 ORTHO05D004911 6.3e-26 121.7 106 66.0
Thhalv10024417m.g Eutrema salsugineum HOM05D003534 ORTHO05D004911 6.3e-26 121.7 106 66.0
Sp7g23760 Schrenkiella parvula HOM05D003534 ORTHO05D004911 6.3e-26 121.7 106 66.0
Nitab4.5_0006725g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 1.1e-25 120.9 203 47.3
CANSAT35G1090 Cannabis sativa HOM05D003534 ORTHO05D004911 4.5e-24 115.5 97 68.0
BcaC07g38209 Brassica carinata HOM05D003534 ORTHO05D004911 1.0e-23 114.4 106 64.2
BolC8t48630H Brassica oleracea HOM05D003534 ORTHO05D004911 1.0e-23 114.4 106 64.2
PSO675G9373 Papaver somniferum HOM05D003534 ORTHO05D004911 1.0e-23 114.4 105 64.8
SMO361G0029 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 1.0e-23 114.4 203 41.4
C08p09620 Brassica napus HOM05D003534 ORTHO05D004911 2.9e-23 112.8 106 63.2
SMO361G0155 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 2.9e-23 112.8 221 38.5
SMO361G0409 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 2.9e-23 112.8 221 38.5
A03p56220 Brassica napus HOM05D003534 ORTHO05D004911 1.1e-22 110.9 224 41.1
BraA03t14692Z Brassica rapa HOM05D003534 ORTHO05D004911 1.5e-22 110.5 224 41.1
Mapoly0151s0007 Marchantia polymorpha HOM05D003534 ORTHO05D004911 3.2e-22 109.4 107 57.9
BraA08t34053Z Brassica rapa HOM05D003534 ORTHO05D004911 2.7e-21 106.3 202 45.0
Lj5A195G74 Lonicera japonica HOM05D003534 ORTHO05D015840 2.7e-21 106.3 80 76.2
Pp3c2_28180 Physcomitrium patens HOM05D003534 ORTHO05D004911 3.6e-21 105.9 107 55.1
Pp3c2_28182 Physcomitrium patens HOM05D003534 ORTHO05D004911 3.6e-21 105.9 107 55.1
AagrBONN_evm.TU.Sc2ySwM_228.187 Anthoceros agrestis HOM05D003534 ORTHO05D004911 4.7e-21 105.5 103 56.3
TPR.G22546 Trifolium pratense HOM05D003534 ORTHO05D004911 4.7e-21 105.5 176 45.5
BolC7t45937H Brassica oleracea HOM05D003534 ORTHO05D004911 6.1e-21 105.1 224 40.6
SMO361G0744 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 6.1e-21 105.1 202 40.6
C07p54510 Brassica napus HOM05D003534 ORTHO05D004911 2.3e-20 103.2 93 65.6
Hma1.2p1_2496F.1_g323320 Hydrangea macrophylla HOM05D003534 ORTHO05D015840 4.0e-20 102.4 82 72.0
Carub.0006s3329 Capsella rubella HOM05D003534 ORTHO05D004911 5.2e-20 102.1 106 62.3
Hma1.2p1_2192F.1_g316723 Hydrangea macrophylla HOM05D003534 ORTHO05D000126 2.6e-19 99.8 82 72.0
Hma1.2p1_2192F.1_g316730 Hydrangea macrophylla HOM05D003534 ORTHO05D000126 2.6e-19 99.8 82 72.0
Hma1.2p1_2192F.1_g316746 Hydrangea macrophylla HOM05D003534 ORTHO05D000126 2.6e-19 99.8 82 72.0
Hma1.2p1_2496F.1_g323326 Hydrangea macrophylla HOM05D003534 ORTHO05D000126 2.6e-19 99.8 82 72.0
CBR_g6403 Chara braunii HOM05D003534 ORTHO05D004911 1.1e-14 84.3 103 49.5
Solyc10g046930.3 Solanum lycopersicum HOM05D003534 ORTHO05D004911 1.1e-14 84.3 216 35.2
BcaC06g32787 Brassica carinata HOM05D003534 ORTHO05D004911 1.5e-14 84.0 226 36.7
Sopen10g016730 Solanum pennellii HOM05D003534 ORTHO05D004911 4.7e-13 79.0 153 42.5
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 6.1e-13 78.6 58 69.0
Atru.chr5.3043 Acer truncatum HOM05D003534 ORTHO05D004911 1.4e-12 77.4 200 41.5
BcaC03g16210 Brassica carinata HOM05D003534 ORTHO05D015840 2.0e-11 73.6 106 45.3
Haze_26769 Corylus avellana HOM05D003534 ORTHO05D004911 7.7e-08 61.6 106 42.5
Cre12.g529500 Chlamydomonas reinhardtii HOM05D003534 ORTHO05D004911 1.9e-06 57.0 97 36.1
QL11p044525 Quercus lobata HOM05D003534 ORTHO05D015840 9.5e-06 54.7 39 71.8


User provided reference genes

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