Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 0.0e+00 1137.5 563 100.0
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 8.9e-251 870.2 563 77.1
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 2.2e-249 865.5 563 76.6
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 4.9e-249 864.4 562 77.0
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 5.4e-248 860.9 563 75.8
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 2.3e-246 855.5 560 76.1
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 3.9e-246 854.7 563 74.8
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 7.3e-245 850.5 563 75.0
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 7.3e-245 850.5 563 75.3
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 9.5e-245 850.1 563 75.8
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 9.5e-245 850.1 563 75.8
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 1.2e-244 849.7 563 75.5
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 1.2e-244 849.7 563 75.1
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 4.0e-243 844.7 563 75.0
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 9.9e-242 840.1 563 73.9
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 1.3e-241 839.7 563 74.1
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 1.3e-241 839.7 560 74.1
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 1.7e-241 839.3 563 73.5
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 2.2e-241 839.0 563 74.1
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 4.9e-241 837.8 563 74.2
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 6.4e-241 837.4 563 73.9
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 1.4e-240 836.3 563 74.6
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 1.9e-240 835.9 563 73.9
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 3.2e-240 835.1 563 73.7
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 3.2e-240 835.1 560 74.1
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 9.2e-240 833.6 563 73.7
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 2.1e-239 832.4 563 73.4
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 7.8e-239 830.5 563 72.8
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 1.0e-238 830.1 560 72.5
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 3.0e-238 828.6 560 73.4
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 2.5e-237 825.5 563 75.0
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 2.8e-236 822.0 563 72.5
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 3.6e-236 821.6 563 73.9
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 4.7e-236 821.2 560 71.8
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 1.4e-235 819.7 560 73.4
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 1.8e-235 819.3 560 71.2
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 6.9e-235 817.4 563 71.2
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 6.9e-235 817.4 564 72.3
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 4.4e-234 814.7 560 71.8
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 5.8e-234 814.3 563 71.8
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 7.6e-234 813.9 560 71.4
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 2.2e-233 812.4 563 71.8
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 4.9e-233 811.2 560 71.1
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 6.4e-233 810.8 571 69.9
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 6.4e-233 810.8 563 71.8
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 6.4e-233 810.8 563 70.9
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 1.1e-232 810.1 563 71.6
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 1.9e-232 809.3 563 71.2
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 9.3e-232 807.0 561 71.3
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 9.3e-232 807.0 563 70.7
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 9.3e-232 807.0 563 71.6
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 1.6e-231 806.2 560 69.5
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 1.6e-231 806.2 560 70.0
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 1.6e-231 806.2 560 69.5
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 3.5e-231 805.1 563 71.6
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 6.0e-231 804.3 560 69.8
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 1.0e-230 803.5 560 70.0
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 1.0e-230 803.5 560 70.5
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 1.0e-230 803.5 566 70.5
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 3.0e-230 802.0 563 71.4
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 3.9e-230 801.6 560 69.6
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 3.9e-230 801.6 579 68.9
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 8.7e-230 800.4 560 69.6
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 1.5e-229 799.7 556 71.2
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 2.5e-229 798.9 563 71.4
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 2.5e-229 798.9 563 69.6
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 3.3e-229 798.5 564 69.7
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 4.3e-229 798.1 563 69.1
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 5.6e-229 797.7 560 69.6
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 7.3e-229 797.3 563 70.5
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 9.6e-229 797.0 588 68.0
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 2.1e-228 795.8 566 70.3
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 2.8e-228 795.4 578 69.2
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 4.8e-228 794.7 550 70.9
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 1.4e-227 793.1 563 69.1
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 1.8e-227 792.7 560 68.4
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 5.3e-227 791.2 563 70.9
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 1.7e-225 786.2 560 69.5
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 3.2e-224 781.9 565 69.4
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 9.3e-224 780.4 560 67.9
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 1.3e-222 776.5 563 69.1
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 5.1e-222 774.6 604 63.9
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 9.9e-218 760.4 560 67.1
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 2.2e-217 759.2 559 67.6
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 1.2e-215 753.4 523 73.4
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 4.3e-213 745.0 558 68.8
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 3.1e-211 738.8 588 64.3
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 9.0e-211 737.3 564 66.8
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 1.6e-207 726.5 532 68.4
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 2.3e-206 722.6 533 67.5
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 1.9e-205 719.5 563 65.5
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 2.9e-201 705.7 563 65.0
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 1.9e-200 703.0 562 61.7
PSO170G5490 Papaver somniferum HOM05D004755 ORTHO05D006137 3.3e-197 692.2 558 65.2
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 4.3e-197 691.8 448 74.6
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 9.7e-197 690.6 559 63.1
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 6.1e-191 671.4 563 62.5
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 1.4e-190 670.2 602 58.1
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 6.7e-190 667.9 472 68.9
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 1.7e-188 663.3 526 64.8
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 2.5e-184 649.4 529 60.9
HPP92_001848 Vanilla planifolia HOM05D004755 ORTHO05D006137 6.8e-166 588.2 583 55.1
BcaNung06950 Brassica carinata HOM05D004755 ORTHO05D006137 7.2e-160 568.2 420 66.7
Mapoly0131s0025 Marchantia polymorpha HOM05D004755 ORTHO05D006137 3.6e-151 539.3 561 49.6
QL07p047567 Quercus lobata HOM05D004755 ORTHO05D006137 1.9e-147 526.9 465 61.5
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 3.3e-144 516.2 562 47.5
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 8.9e-142 508.1 565 47.6
Hma1.2p1_0066F.1_g036770 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 1.6e-138 497.3 363 72.2
AagrBONN_evm.TU.Sc2ySwM_368.721 Anthoceros agrestis HOM05D004755 ORTHO05D006137 2.5e-136 490.0 454 50.0
Oeu010556.1 Olea europaea HOM05D004755 ORTHO05D006137 5.1e-121 439.1 291 72.2
Zm00001eb299230 Zea mays HOM05D004755 ORTHO05D006137 4.0e-118 429.5 319 64.9
CBR_g24445 Chara braunii HOM05D004755 ORTHO05D006137 6.2e-111 405.6 501 43.1
Oeu010560.1 Olea europaea HOM05D004755 ORTHO05D006137 3.7e-103 379.8 276 69.2
QL11p041479 Quercus lobata HOM05D004755 ORTHO05D006137 1.2e-98 364.8 398 52.3
Lsat_1_v5_gn_9_93780 Lactuca sativa HOM05D004755 ORTHO05D006137 4.7e-66 256.5 145 81.4
SHI05427 Sapria himalayana HOM05D004755 ORTHO05D006137 5.2e-65 253.1 231 55.0
SEGI_27412 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 1.1e-64 251.9 157 70.7
FAN02G3646 Fragaria x ananassa HOM05D004755 ORTHO05D006137 5.2e-57 226.5 173 61.3
Cfa023312 Carpinus fangiana HOM05D004755 ORTHO05D006137 6.3e-55 219.5 583 26.9
Hma1.2p1_0066F.1_g036750 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 2.2e-52 211.1 119 81.5
Cre09.g389912 Chlamydomonas reinhardtii HOM05D004755 ORTHO05D006137 1.5e-51 208.4 654 30.7
MCO13G192 Micromonas commoda HOM05D004755 ORTHO05D006137 1.2e-50 205.3 557 28.7
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 2.0e-48 198.0 151 65.6
Lsat_1_v5_gn_3_56800 Lactuca sativa HOM05D004755 ORTHO05D006137 1.2e-42 178.7 137 69.3
PRCOL_00000489 Prasinoderma coloniale HOM05D004755 ORTHO05D006137 3.1e-33 147.5 461 27.1
Thecc.09G060700 Theobroma cacao HOM05D004755 ORTHO05D006137 3.4e-32 144.1 97 78.4
SHI05426 Sapria himalayana HOM05D004755 ORTHO05D006137 3.2e-30 137.5 106 66.0
QL11p041806 Quercus lobata HOM05D004755 ORTHO05D006137 9.2e-30 136.0 102 74.5
AagrBONN_evm.TU.Sc2ySwM_368.805 Anthoceros agrestis HOM05D004755 ORTHO05D006137 1.0e-28 132.5 115 53.0
Glyma.01G127800 Glycine max HOM05D004755 ORTHO05D006137 2.3e-28 131.3 91 76.9
TPR.G18928 Trifolium pratense HOM05D004755 ORTHO05D006137 3.9e-28 130.6 103 69.9
QL11p041511 Quercus lobata HOM05D004755 ORTHO05D006137 8.6e-28 129.4 90 76.7
QL11p041742 Quercus lobata HOM05D004755 ORTHO05D006137 4.7e-26 123.6 90 74.4
Lsat_1_v5_gn_3_67820 Lactuca sativa HOM05D001195 ORTHO05D001138 1.4e-25 122.1 82 74.4
Rhsim12G0078300 Rhododendron simsii HOM05D004755 ORTHO05D006137 7.5e-24 116.3 99 60.6
Ca_08127_v3 Cicer arietinum L. HOM05D009313 ORTHO05D011011 1.7e-23 115.2 85 65.9
CDE05G0342 Ceratophyllum demersum HOM05D004755 ORTHO05D006137 9.2e-22 109.4 98 54.1
SEGI_11122 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 1.0e-20 105.9 89 62.9
CsaV3_6G026350 Cucumis sativus L. HOM05D004755 ORTHO05D006137 2.1e-18 98.2 57 75.4
PGSC0003DMG400025184 Solanum tuberosum HOM05D004755 ORTHO05D006137 1.8e-17 95.1 69 71.0
SEGI_36377 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 4.0e-17 94.0 110 44.5
BcaB01g04782 Brassica carinata HOM05D004755 ORTHO05D039688 3.7e-15 87.4 90 46.7
BcaB01g04780 Brassica carinata HOM05D040276 ORTHO05D039688 1.1e-14 85.9 66 56.1
CARHR099950 Cardamine hirsuta HOM05D004755 ORTHO05D006137 4.1e-14 84.0 68 58.8
CsaV3_2G000030 Cucumis sativus L. HOM05D004755 ORTHO05D006137 1.1e-09 69.3 39 84.6
Haze_01851 Corylus avellana HOM05D004755 ORTHO05D006137 2.4e-09 68.2 44 77.3
QL11p042075 Quercus lobata HOM05D004755 ORTHO05D006137 2.4e-09 68.2 48 68.8
CARHR219250 Cardamine hirsuta HOM05D004755 ORTHO05D006137 1.5e-08 65.5 61 57.4


User provided reference genes

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