Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 0.0e+00 1684.5 833 100.0
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 0.0e+00 1144.0 837 68.7
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 0.0e+00 1129.4 835 67.2
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 0.0e+00 1109.0 839 66.0
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 0.0e+00 1099.7 840 65.6
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 0.0e+00 1097.4 837 65.6
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 0.0e+00 1090.1 833 65.2
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 5.7e-312 1073.5 835 64.7
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 4.0e-311 1071.2 833 64.5
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 2.5e-310 1068.5 824 64.1
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 5.3e-300 1034.2 843 62.5
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 5.5e-297 1024.2 827 62.0
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 3.1e-292 1008.4 864 59.0
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 1.3e-290 1003.0 834 60.6
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 5.0e-290 1001.1 843 60.0
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 5.0e-290 1001.1 831 59.4
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 6.5e-290 1000.7 819 61.5
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 1.4e-289 999.6 819 60.0
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 6.9e-284 980.7 842 57.7
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 9.0e-284 980.3 819 59.6
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 1.6e-280 969.5 875 57.9
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 2.6e-278 962.2 822 58.8
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 2.8e-277 958.7 829 58.7
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 9.4e-273 943.7 841 57.8
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 3.6e-272 941.8 829 58.1
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 1.3e-269 933.3 830 58.4
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 1.4e-268 929.9 836 56.1
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 4.1e-268 928.3 782 60.0
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 1.6e-267 926.4 774 60.9
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 1.0e-266 923.7 893 54.5
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 1.0e-266 923.7 830 58.1
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 1.3e-266 923.3 841 57.4
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 5.0e-266 921.4 813 57.4
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 9.4e-265 917.1 829 57.3
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 2.1e-264 916.0 830 57.5
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 4.0e-263 911.8 829 57.1
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 1.5e-262 909.8 818 55.0
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 6.3e-261 904.4 839 56.4
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 1.9e-257 892.9 828 56.8
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 3.4e-254 882.1 815 56.9
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 9.8e-254 880.6 723 62.4
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 6.3e-253 877.9 818 54.9
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 7.2e-249 864.4 819 54.3
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 1.4e-244 850.1 825 53.2
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 4.1e-244 848.6 822 53.8
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 2.3e-242 842.8 855 51.8
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 2.5e-241 839.3 701 61.5
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 4.3e-241 838.6 823 53.7
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 7.5e-238 827.8 642 63.1
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 9.8e-238 827.4 823 53.8
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 2.2e-237 826.2 750 56.4
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 2.5e-233 812.8 834 51.0
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 5.6e-233 811.6 829 51.4
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 5.6e-233 811.6 739 56.3
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 2.8e-232 809.3 642 62.1
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 1.5e-225 786.9 844 50.2
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 2.3e-223 779.6 775 51.7
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 5.8e-214 748.4 867 48.9
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 1.1e-207 727.6 846 47.5
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 2.3e-202 709.9 572 62.4
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 4.0e-199 699.1 821 48.1
HanXRQChr04g0102021 Helianthus annuus HOM05D007125 ORTHO05D008766 1.7e-197 693.7 651 55.6
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 2.4e-196 689.9 835 47.8
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 5.8e-190 668.7 737 46.9
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 9.0e-183 644.8 881 42.6
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 4.6e-179 632.5 874 41.6
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 1.1e-175 621.3 828 42.8
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 3.3e-169 599.7 844 40.6
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 1.3e-165 587.8 447 65.8
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 1.7e-165 587.4 753 42.6
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 1.3e-160 571.2 443 62.3
Medtr7g066770 Medicago truncatula HOM05D007125 ORTHO05D008766 1.4e-154 551.2 457 61.7
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 9.1e-151 538.5 493 54.4
Sc01g0006770 Simmondsia chinensis HOM05D007125 ORTHO05D008766 3.2e-148 530.0 518 54.8
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 1.6e-147 527.7 568 48.2
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 3.5e-126 456.8 406 57.9
SEGI_28201 Sequoiadendron giganteum HOM05D007125 ORTHO05D008766 4.2e-79 300.4 372 44.9
Cre01.g034600 Chlamydomonas reinhardtii HOM05D007125 ORTHO05D008766 2.1e-78 298.1 751 29.6
Atru.chr8.2197 Acer truncatum HOM05D007125 ORTHO05D008766 5.6e-76 290.0 187 73.8
MCO08G172 Micromonas commoda HOM05D007125 ORTHO05D008766 3.2e-71 274.2 887 26.4
Medtr7g066750 Medicago truncatula HOM05D007125 ORTHO05D008766 1.3e-56 225.7 221 50.7
arahy.Tifrunner.gnm1.ann1.IUS8SN Arachis hypogaea HOM05D007125 ORTHO05D008766 8.8e-53 213.0 229 49.8
arahy.Tifrunner.gnm1.ann1.KE62B1 Arachis hypogaea HOM05D007125 ORTHO05D008766 4.3e-52 210.7 222 50.5
arahy.Tifrunner.gnm1.ann1.KIE2XR Arachis hypogaea HOM05D007125 ORTHO05D008766 4.8e-51 207.2 222 50.0
HanXRQChr04g0102011 Helianthus annuus HOM05D007125 ORTHO05D008766 9.4e-47 193.0 194 49.5
unitig_27.g24821 Utricularia gibba HOM05D007125 ORTHO05D008766 4.8e-43 180.6 579 26.9
Sc01g0006790 Simmondsia chinensis HOM05D007125 ORTHO05D008766 2.3e-37 161.8 162 48.1
Sc01g0006780 Simmondsia chinensis HOM05D007125 ORTHO05D008766 2.9e-32 144.8 109 65.1
BolC1t05511H Brassica oleracea HOM05D007125 ORTHO05D008766 1.5e-31 142.5 180 47.8
Cfa025266 Carpinus fangiana HOM05D007125 ORTHO05D008766 1.5e-28 132.5 676 23.7
MSTRG.19029 Avicennia marina HOM05D007125 ORTHO05D008766 5.7e-28 130.6 101 61.4
CSS0006466 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 4.1e-26 124.4 90 71.1
Actinidia13779 Actinidia chinensis HOM05D007125 ORTHO05D008766 5.3e-26 124.0 96 68.8
VMungo1383G1324 Vigna mungo HOM05D007125 ORTHO05D008766 5.5e-23 114.0 88 65.9
Lalb_Chr03g0042981 Lupinus albus HOM05D007125 ORTHO05D008766 1.2e-22 112.8 89 68.5
MCO11G281 Micromonas commoda HOM05D015011 ORTHO05D017325 1.9e-15 89.0 724 20.9
BcaC09g47967 Brassica carinata HOM05D007125 ORTHO05D008766 3.3e-15 88.2 64 67.2
MBI11_g31733_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 7.2e-15 87.0 83 51.8
unitig_27.g24820 Utricularia gibba HOM05D007125 ORTHO05D008766 1.5e-12 79.3 88 50.0
TPR.G1592 Trifolium pratense HOM05D007125 ORTHO05D008766 5.4e-10 70.9 116 35.3
MCO12G477 Micromonas commoda HOM05D009332 ORTHO05D011893 7.8e-09 67.0 208 28.4
AagrBONN_evm.TU.Sc2ySwM_362.2826 Anthoceros agrestis HOM05D014975 ORTHO05D016505 3.9e-08 64.7 121 32.2
Sopen09g033600 Solanum pennellii HOM05D003335 ORTHO05D003853 1.5e-07 62.8 236 26.3
Manes.03G148800 Manihot esculenta HOM05D000836 ORTHO05D000709 1.9e-07 62.4 253 22.1
PGSC0003DMG400017196 Solanum tuberosum HOM05D003335 ORTHO05D003853 2.5e-07 62.0 236 25.8
Peaxi162Scf00153g01716 Petunia axillaris HOM05D003335 ORTHO05D003853 3.3e-07 61.6 235 24.7
Solyc09g090660.3 Solanum lycopersicum HOM05D003335 ORTHO05D003853 3.3e-07 61.6 236 25.8
MCO04G462 Micromonas commoda HOM05D015011 ORTHO05D017325 7.3e-07 60.5 197 23.9
Sed0021710 Sechium edule HOM05D007125 ORTHO05D008766 7.3e-07 60.5 69 46.4
Cre12.g489750 Chlamydomonas reinhardtii HOM05D015011 ORTHO05D017325 9.5e-07 60.1 171 25.1
Nitab4.5_0000194g0280 Nicotiana tabacum HOM05D003335 ORTHO05D003853 1.6e-06 59.3 236 25.4
Nitab4.5_0002751g0050 Nicotiana tabacum HOM05D003335 ORTHO05D003853 2.1e-06 58.9 236 25.4
Lj1g0006709 Lotus japonicus HOM05D000526 ORTHO05D000956 2.8e-06 58.5 276 25.0
Potri.001G306500 Populus trichocarpa HOM05D006430 ORTHO05D007585 3.6e-06 58.2 147 29.9
unitig_37.g12838 Utricularia gibba HOM05D006430 ORTHO05D007585 4.7e-06 57.8 147 31.3
CDE08G0124 Ceratophyllum demersum HOM05D006430 ORTHO05D007585 6.1e-06 57.4 144 29.9
Glyma.08G145700 Glycine max HOM05D006430 ORTHO05D007585 6.1e-06 57.4 144 30.6


User provided reference genes

Program Settings