Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 1.2e-158 563.1 295 100.0
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 1.8e-109 399.8 284 72.2
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 2.3e-109 399.4 284 72.9
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 8.9e-109 397.5 281 71.5
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 2.0e-108 396.4 281 71.9
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 2.0e-108 396.4 281 71.9
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 2.0e-108 396.4 281 71.9
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 2.4e-106 389.4 272 73.5
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 5.4e-106 388.3 282 71.3
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 9.2e-106 387.5 285 73.7
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 1.0e-104 384.0 285 71.9
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 1.3e-104 383.6 281 72.6
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 3.0e-104 382.5 216 84.3
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 5.0e-104 381.7 285 69.8
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 1.1e-103 380.6 264 73.9
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 1.5e-103 380.2 277 73.3
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 1.9e-103 379.8 284 71.1
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 2.5e-103 379.4 218 83.5
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 3.3e-103 379.0 264 73.5
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 4.3e-103 378.6 284 69.7
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 9.5e-103 377.5 281 70.5
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 9.5e-103 377.5 213 84.5
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 1.6e-102 376.7 274 69.3
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 1.6e-102 376.7 285 70.2
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 1.6e-102 376.7 285 70.2
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 1.6e-102 376.7 225 80.9
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 2.1e-102 376.3 262 71.8
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 3.6e-102 375.6 281 72.2
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 3.6e-102 375.6 280 72.1
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 6.2e-102 374.8 212 85.4
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 8.0e-102 374.4 214 83.6
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 5.2e-101 371.7 281 69.8
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 1.2e-100 370.5 223 81.2
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 1.5e-100 370.2 274 69.3
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 1.5e-100 370.2 290 67.9
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 2.6e-100 369.4 279 67.4
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 7.5e-100 367.9 270 69.3
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 1.7e-99 366.7 276 72.1
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 2.2e-99 366.3 285 70.9
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 2.2e-99 366.3 218 80.7
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 3.7e-99 365.5 253 72.3
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 4.9e-99 365.2 213 84.5
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 4.9e-99 365.2 226 79.6
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 4.9e-99 365.2 285 70.2
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 4.9e-99 365.2 285 70.2
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 4.9e-99 365.2 288 69.1
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 8.3e-99 364.4 257 70.4
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 1.1e-98 364.0 285 70.2
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 1.1e-98 364.0 211 82.9
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.4e-98 363.6 216 81.0
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 1.9e-98 363.2 215 80.9
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 2.4e-98 362.8 213 82.6
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 3.2e-98 362.5 253 70.4
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 5.4e-98 361.7 285 69.8
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 5.4e-98 361.7 284 69.4
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 7.0e-98 361.3 256 71.1
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 1.2e-97 360.5 255 70.6
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 1.2e-97 360.5 255 70.6
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 2.7e-97 359.4 258 70.9
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.5e-97 359.0 258 70.9
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 3.5e-97 359.0 287 65.5
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 4.6e-97 358.6 253 71.5
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 4.6e-97 358.6 221 78.7
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 6.0e-97 358.2 214 80.8
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 1.0e-96 357.5 277 67.9
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 1.7e-96 356.7 258 70.5
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 2.3e-96 356.3 244 72.5
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 2.3e-96 356.3 258 69.0
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 3.9e-96 355.5 214 80.4
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 2.5e-95 352.8 214 81.3
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 3.3e-95 352.4 266 70.3
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 9.5e-95 350.9 214 77.6
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 1.2e-94 350.5 288 63.5
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 2.8e-94 349.4 256 68.0
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.1e-93 347.4 254 70.9
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 1.8e-93 346.7 212 76.9
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 8.9e-93 344.4 211 78.7
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 9.9e-92 340.9 213 78.4
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 2.2e-91 339.7 269 65.8
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 3.7e-91 339.0 276 65.9
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 6.4e-91 338.2 269 65.8
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 6.4e-91 338.2 269 65.4
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 1.1e-90 337.4 210 75.2
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 2.4e-90 336.3 210 75.2
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 7.1e-90 334.7 216 72.2
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 9.2e-90 334.3 255 68.2
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 9.2e-90 334.3 233 73.0
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 4.6e-89 332.0 212 73.1
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 4.6e-89 332.0 283 64.0
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 1.9e-87 326.6 282 65.2
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 4.3e-87 325.5 198 79.8
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 1.1e-85 320.9 201 75.6
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 1.5e-84 317.0 253 64.8
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 9.2e-82 307.8 277 59.6
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 3.5e-73 279.3 212 66.0
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 7.3e-71 271.6 150 86.7
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 9.6e-63 244.6 265 48.7
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 3.2e-58 229.6 223 51.6
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 2.4e-53 213.4 211 48.3
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 7.6e-52 208.4 128 78.1
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 1.2e-36 157.9 208 38.5
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 3.5e-20 103.2 63 76.2
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 5.7e-15 85.9 72 58.3
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 5.7e-15 85.9 72 58.3
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 3.2e-10 70.1 208 24.0
FvH4_6g01352 Fragaria vesca HOM05D002281 ORTHO05D006774 1.6e-09 67.8 112 44.6
CSS0012562 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 1.4e-08 64.7 65 52.3
TPR.G31597 Trifolium pratense HOM05D002281 ORTHO05D006774 1.8e-08 64.3 40 72.5
Cre12.g497350 Chlamydomonas reinhardtii HOM05D002281 ORTHO05D006774 2.3e-08 63.9 210 26.7


User provided reference genes

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