Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc51.2 Carica papaya HOM05D000728 ORTHO05D001586 6.3e-82 307.4 154 100.0
Manes.08G140400 Manihot esculenta HOM05D000728 ORTHO05D001586 1.1e-14 84.0 59 62.7
TWI60G1581 Tripterygium wilfordii HOM05D000728 ORTHO05D001586 1.1e-14 84.0 61 62.3
Thecc.05G268100 Theobroma cacao HOM05D000728 ORTHO05D001586 2.5e-14 82.8 61 59.0
Gohir.D13G106500 Gossypium hirsutum HOM05D000728 ORTHO05D001586 1.3e-13 80.5 61 55.7
Gorai.013G119500 Gossypium raimondii HOM05D000728 ORTHO05D001586 1.3e-13 80.5 61 55.7
Gohir.A13G103500 Gossypium hirsutum HOM05D000728 ORTHO05D001586 1.6e-13 80.1 61 55.7
Haze_04405 Corylus avellana HOM05D000728 ORTHO05D001586 1.1e-12 77.4 60 58.3
Cfa006374 Carpinus fangiana HOM05D000728 ORTHO05D001586 1.4e-12 77.0 60 58.3
Potri.013G048100 Populus trichocarpa HOM05D000728 ORTHO05D001586 1.4e-12 77.0 61 60.7
TWI32G0065 Tripterygium wilfordii HOM05D000728 ORTHO05D001586 1.4e-12 77.0 61 59.0
COL.COLO4_15515 Corchorus olitorius HOM05D000728 ORTHO05D001586 6.9e-12 74.7 61 57.4
MD04G1231900 Malus domestica HOM05D000728 ORTHO05D001586 6.9e-12 74.7 61 57.4
Sabra13G0044100 Salix brachista HOM05D000728 ORTHO05D001586 1.2e-11 73.9 62 58.1
ClCG11G010430 Citrullus lanatus HOM05D000728 ORTHO05D001586 4.5e-11 72.0 61 50.8
TWI12G1257 Tripterygium wilfordii HOM05D000728 ORTHO05D001586 1.3e-10 70.5 63 52.4
MELO3C008647.2 Cucumis melo HOM05D000728 ORTHO05D001586 2.9e-10 69.3 61 47.5
Prupe.6G351300 Prunus persica HOM05D000728 ORTHO05D001586 2.9e-10 69.3 61 52.5
Glyma.10G165500 Glycine max HOM05D000728 ORTHO05D001586 3.8e-10 68.9 61 52.5
Lalb_Chr02g0149031 Lupinus albus HOM05D000728 ORTHO05D001586 3.8e-10 68.9 61 52.5
PGR004G2531 Punica granatum HOM05D000728 ORTHO05D001586 3.8e-10 68.9 58 55.2
RcHm_v2.0_Chr3g0449441 Rosa chinensis HOM05D000728 ORTHO05D001586 3.8e-10 68.9 57 50.9
THA.LOC104820765 Tarenaya hassleriana HOM05D000728 ORTHO05D001586 3.8e-10 68.9 65 47.7
EL10Ac7g17673 Beta vulgaris HOM05D000728 ORTHO05D001586 8.4e-10 67.8 61 49.2
Aa31LG5G14850 Aethionema arabicum HOM05D000728 ORTHO05D001586 1.1e-09 67.4 57 52.6
Migut.D00470 Erythranthe guttata HOM05D000728 ORTHO05D001586 1.9e-09 66.6 79 46.8
HanXRQChr10g0280661 Helianthus annuus HOM05D000728 ORTHO05D001586 1.9e-09 66.6 62 51.6
AUR62008788 Chenopodium quinoa HOM05D000728 ORTHO05D001586 2.4e-09 66.2 62 51.6
AUR62025455 Chenopodium quinoa HOM05D000728 ORTHO05D001586 2.4e-09 66.2 62 51.6
Haze_24694 Corylus avellana HOM05D000728 ORTHO05D001586 2.4e-09 66.2 60 55.0
Gohir.D08G209900 Gossypium hirsutum HOM05D000728 ORTHO05D001586 2.4e-09 66.2 61 52.5
Gorai.004G222200 Gossypium raimondii HOM05D000728 ORTHO05D001586 2.4e-09 66.2 61 52.5
Potri.002G257400 Populus trichocarpa HOM05D000728 ORTHO05D001586 2.4e-09 66.2 61 52.5
TWI18G0707 Tripterygium wilfordii HOM05D000728 ORTHO05D001586 2.4e-09 66.2 63 49.2
Sed0005606 Sechium edule HOM05D000728 ORTHO05D001586 3.2e-09 65.9 61 49.2
Sed0009375 Sechium edule HOM05D000728 ORTHO05D001586 3.2e-09 65.9 61 47.5
Thecc.01G251600 Theobroma cacao HOM05D000728 ORTHO05D001586 3.2e-09 65.9 61 54.1
Ciclev10018896m.g Citrus clementina HOM05D000728 ORTHO05D001586 4.2e-09 65.5 61 47.5
Hma1.2p1_0273F.1_g109260 Hydrangea macrophylla HOM05D000728 ORTHO05D001586 4.2e-09 65.5 62 50.0
Lj1C73G4 Lonicera japonica HOM05D000728 ORTHO05D001586 4.2e-09 65.5 62 50.0
CSS0045777 Camellia sinensis var. sinensis HOM05D000728 ORTHO05D001586 5.5e-09 65.1 62 51.6
Ca_10022_v3 Cicer arietinum L. HOM05D000728 ORTHO05D001586 5.5e-09 65.1 61 47.5
Ca_29586_v3 Cicer arietinum L. HOM05D000728 ORTHO05D001586 5.5e-09 65.1 61 47.5
CsaV3_2G009930 Cucumis sativus L. HOM05D000728 ORTHO05D001586 5.5e-09 65.1 52 53.8
Migut.N02227 Erythranthe guttata HOM05D000728 ORTHO05D001586 5.5e-09 65.1 60 51.7
Gohir.A08G191866 Gossypium hirsutum HOM05D000728 ORTHO05D001586 7.1e-09 64.7 61 50.8
Lsat_1_v5_gn_9_11421 Lactuca sativa HOM05D000728 ORTHO05D001586 7.1e-09 64.7 59 52.5
PGR044G1458 Punica granatum HOM05D000728 ORTHO05D001586 7.1e-09 64.7 61 47.5
Sed0009313 Sechium edule HOM05D000728 ORTHO05D001586 7.1e-09 64.7 61 52.5
Duzib211G0287 Durio zibethinus HOM05D000728 ORTHO05D001586 9.3e-09 64.3 61 47.5
HanXRQChr15g0468241 Helianthus annuus HOM05D000728 ORTHO05D001586 9.3e-09 64.3 59 52.5
Rhsim13G0039700 Rhododendron simsii HOM05D000728 ORTHO05D001586 9.3e-09 64.3 62 48.4
Duzib138G0819 Durio zibethinus HOM05D000728 ORTHO05D001586 1.2e-08 63.9 61 49.2
Gohir.D09G059250 Gossypium hirsutum HOM05D000728 ORTHO05D001586 1.2e-08 63.9 61 49.2
Gorai.006G073800 Gossypium raimondii HOM05D000728 ORTHO05D001586 1.2e-08 63.9 61 49.2
Solyc09g072890.2 Solanum lycopersicum HOM05D000728 ORTHO05D001586 1.6e-08 63.5 59 50.8
Sopen09g028690 Solanum pennellii HOM05D000728 ORTHO05D001586 1.6e-08 63.5 59 50.8
Sopen09g028710 Solanum pennellii HOM05D000728 ORTHO05D001586 1.6e-08 63.5 59 50.8
Ah.08g218230 Amaranthus hybridus HOM05D000728 ORTHO05D001586 2.1e-08 63.2 56 50.0
CSS0013114 Camellia sinensis var. sinensis HOM05D000728 ORTHO05D001586 2.1e-08 63.2 61 47.5
CSS0020820 Camellia sinensis var. sinensis HOM05D000728 ORTHO05D001586 2.1e-08 63.2 61 47.5
Lj2A44T78 Lonicera japonica HOM05D000728 ORTHO05D001586 2.1e-08 63.2 61 47.5
Zm00001eb038540 Zea mays HOM05D000728 ORTHO05D001586 2.1e-08 63.2 57 52.6
CsaV3_6G007420 Cucumis sativus L. HOM05D000728 ORTHO05D001586 2.7e-08 62.8 61 47.5
Manes.12G036100 Manihot esculenta HOM05D000728 ORTHO05D001586 2.7e-08 62.8 61 49.2
Phvul.001G164300 Phaseolus vulgaris HOM05D000728 ORTHO05D001586 2.7e-08 62.8 61 52.5
Prupe.8G216300 Prunus persica HOM05D000728 ORTHO05D001586 2.7e-08 62.8 61 47.5
vmacro02707 Vaccinium macrocarpon HOM05D000728 ORTHO05D001586 2.7e-08 62.8 56 53.6
EL10Ac4g09749 Beta vulgaris HOM05D000728 ORTHO05D001586 3.5e-08 62.4 56 51.8
CANSAT01G3020 Cannabis sativa HOM05D000728 ORTHO05D001586 3.5e-08 62.4 59 52.5
Ciclev10030747m.g Citrus clementina HOM05D000728 ORTHO05D001586 3.5e-08 62.4 57 50.9
MELO3C022387.2 Cucumis melo HOM05D000728 ORTHO05D001586 3.5e-08 62.4 61 49.2
ECA247G3020 Erigeron canadensis HOM05D000728 ORTHO05D001586 3.5e-08 62.4 59 49.2
FvH4_2g02250 Fragaria vesca HOM05D000728 ORTHO05D001586 3.5e-08 62.4 56 44.6
FAN24G0771 Fragaria x ananassa HOM05D000728 ORTHO05D001586 3.5e-08 62.4 56 44.6
Manes.13G040300 Manihot esculenta HOM05D000728 ORTHO05D001586 3.5e-08 62.4 61 47.5
Nn1g02947 Nelumbo nucifera HOM05D000728 ORTHO05D001586 3.5e-08 62.4 62 45.2
Hund05480 Selenicereus undatus HOM05D000728 ORTHO05D001586 3.5e-08 62.4 62 45.2
Hund18282 Selenicereus undatus HOM05D000728 ORTHO05D001586 3.5e-08 62.4 62 46.8
Ca_09651_v3 Cicer arietinum L. HOM05D000728 ORTHO05D001586 4.6e-08 62.0 59 50.8
ECA236G2323 Erigeron canadensis HOM05D000728 ORTHO05D001586 4.6e-08 62.0 62 46.8
Medtr7g098390 Medicago truncatula HOM05D000728 ORTHO05D001586 4.6e-08 62.0 62 48.4
Nitab4.5_0002538g0040 Nicotiana tabacum HOM05D000728 ORTHO05D001586 4.6e-08 62.0 62 50.0
Nitab4.5_0003167g0090 Nicotiana tabacum HOM05D000728 ORTHO05D001586 4.6e-08 62.0 62 50.0
Phvul.007G189700 Phaseolus vulgaris HOM05D000728 ORTHO05D001586 4.6e-08 62.0 60 51.7
PGR004G1360 Punica granatum HOM05D000728 ORTHO05D001586 4.6e-08 62.0 56 50.0
TAR633G1057 Trochodendron aralioides HOM05D000728 ORTHO05D001586 4.6e-08 62.0 62 46.8
arahy.Tifrunner.gnm1.ann1.K131WV Arachis hypogaea HOM05D000728 ORTHO05D001586 6.0e-08 61.6 57 49.1
MSTRG.12519 Avicennia marina HOM05D000728 ORTHO05D001586 6.0e-08 61.6 57 52.6
CSS0031500 Camellia sinensis var. sinensis HOM05D000728 ORTHO05D001586 6.0e-08 61.6 56 50.0
CAN.G1487.2 Capsicum annuum HOM05D000728 ORTHO05D001586 6.0e-08 61.6 56 53.6
CAN.G771.39 Capsicum annuum HOM05D000728 ORTHO05D001586 6.0e-08 61.6 62 46.8
ClCG06G001460 Citrullus lanatus HOM05D000728 ORTHO05D001586 6.0e-08 61.6 56 51.8
TAR365G0137 Trochodendron aralioides HOM05D000728 ORTHO05D001586 6.0e-08 61.6 62 45.2
arahy.Tifrunner.gnm1.ann1.K3KASK Arachis hypogaea HOM05D000728 ORTHO05D001586 7.9e-08 61.2 61 45.9
arahy.Tifrunner.gnm1.ann1.YP76SE Arachis hypogaea HOM05D000728 ORTHO05D001586 7.9e-08 61.2 61 45.9
Glyma.13G126600 Glycine max HOM05D000728 ORTHO05D001586 7.9e-08 61.2 56 53.6
Zm00001eb175610 Zea mays HOM05D000728 ORTHO05D001586 7.9e-08 61.2 57 49.1
Oeu028901.1 Olea europaea HOM05D000728 ORTHO05D001586 1.0e-07 60.8 62 46.8
Oeu052077.3 Olea europaea HOM05D000728 ORTHO05D001586 1.0e-07 60.8 62 46.8
Potri.014G192500 Populus trichocarpa HOM05D000728 ORTHO05D001586 1.0e-07 60.8 61 44.3
arahy.Tifrunner.gnm1.ann1.P6V57K Arachis hypogaea HOM05D000728 ORTHO05D001586 1.3e-07 60.5 56 50.0
Dinv27107 Davidia involucrata HOM05D000728 ORTHO05D001586 1.3e-07 60.5 61 47.5
Medtr1g080340 Medicago truncatula HOM05D000728 ORTHO05D001586 1.3e-07 60.5 62 43.5
Peaxi162Scf01157g00110 Petunia axillaris HOM05D000728 ORTHO05D001586 1.3e-07 60.5 61 47.5
RcHm_v2.0_Chr6g0245941 Rosa chinensis HOM05D000728 ORTHO05D001586 1.3e-07 60.5 56 46.4
Dinv02909 Davidia involucrata HOM05D000728 ORTHO05D001586 1.8e-07 60.1 61 49.2
Lj2C1143T10 Lonicera japonica HOM05D000728 ORTHO05D001586 1.8e-07 60.1 59 49.2
Medtr1g069570 Medicago truncatula HOM05D000728 ORTHO05D001586 1.8e-07 60.1 55 50.9
VMungo0720G3037 Vigna mungo HOM05D000728 ORTHO05D001586 1.8e-07 60.1 60 50.0
VMungo1383G1125 Vigna mungo HOM05D000728 ORTHO05D001586 1.8e-07 60.1 61 49.2
CAN.G941.29 Capsicum annuum HOM05D000728 ORTHO05D001586 2.3e-07 59.7 61 45.9
CiPaw.03G270100 Carya illinoinensis HOM05D000728 ORTHO05D001586 2.3e-07 59.7 61 50.8
CDE05G1476 Ceratophyllum demersum HOM05D000728 ORTHO05D001586 2.3e-07 59.7 54 50.0
CDE05G1865 Ceratophyllum demersum HOM05D000728 ORTHO05D001586 2.3e-07 59.7 54 53.7
Lj1g0018773 Lotus japonicus HOM05D000728 ORTHO05D001586 2.3e-07 59.7 61 49.2
Sc17g0002720 Simmondsia chinensis HOM05D000728 ORTHO05D001586 2.3e-07 59.7 56 48.2
Ca_08736_v3 Cicer arietinum L. HOM05D000728 ORTHO05D001586 3.0e-07 59.3 61 47.5
DCAR_004684 Daucus carota HOM05D000728 ORTHO05D001586 3.0e-07 59.3 62 48.4
Gohir.D11G139300 Gossypium hirsutum HOM05D000728 ORTHO05D001586 3.0e-07 59.3 61 44.3
Gorai.007G149600 Gossypium raimondii HOM05D000728 ORTHO05D001586 3.0e-07 59.3 61 44.3
GSVIVG01028411001 Vitis vinifera HOM05D000728 ORTHO05D001586 3.0e-07 59.3 61 47.5
arahy.Tifrunner.gnm1.ann1.68RZIY Arachis hypogaea HOM05D000728 ORTHO05D001586 3.9e-07 58.9 60 48.3
arahy.Tifrunner.gnm1.ann1.W86IKX Arachis hypogaea HOM05D000728 ORTHO05D001586 3.9e-07 58.9 60 48.3
MSTRG.18349 Avicennia marina HOM05D000728 ORTHO05D001586 3.9e-07 58.9 54 51.9
AUR62000625 Chenopodium quinoa HOM05D000728 ORTHO05D001586 3.9e-07 58.9 56 50.0
Cc01_g17860 Coffea canephora HOM05D000728 ORTHO05D001586 3.9e-07 58.9 62 45.2
DCAR_012580 Daucus carota HOM05D000728 ORTHO05D001586 3.9e-07 58.9 56 48.2
HanXRQChr06g0172551 Helianthus annuus HOM05D000728 ORTHO05D001586 3.9e-07 58.9 57 49.1
Hma1.2p1_3058F.1_g332170 Hydrangea macrophylla HOM05D000728 ORTHO05D001586 3.9e-07 58.9 61 45.9
MD00G1060700 Malus domestica HOM05D000728 ORTHO05D001586 3.9e-07 58.9 61 44.3
PSO017G6872 Papaver somniferum HOM05D000728 ORTHO05D001586 3.9e-07 58.9 61 47.5
CANSAT54G0731 Cannabis sativa HOM05D000728 ORTHO05D001586 5.1e-07 58.5 54 55.6
Cc01_g17870 Coffea canephora HOM05D000728 ORTHO05D001586 5.1e-07 58.5 56 48.2
Lalb_Chr06g0170701 Lupinus albus HOM05D000728 ORTHO05D001586 5.1e-07 58.5 60 46.7
MBI10_g30715_MAGBIO Magnolia biondii HOM05D000728 ORTHO05D001586 5.1e-07 58.5 52 48.1
SGA_v2.0_scaffold1G00645 Striga asiatica HOM05D000728 ORTHO05D001586 5.1e-07 58.5 60 46.7
TPR.G5674 Trifolium pratense HOM05D000728 ORTHO05D001586 5.1e-07 58.5 55 50.9
unitig_60.g25730 Utricularia gibba HOM05D000728 ORTHO05D001586 5.1e-07 58.5 59 47.5
Eucgr.K01433 Eucalyptus grandis HOM05D000728 ORTHO05D001586 6.7e-07 58.2 61 44.3
Psat3g055160 Pisum sativum HOM05D000728 ORTHO05D001586 6.7e-07 58.2 56 42.9
HPP92_025830 Vanilla planifolia HOM05D000728 ORTHO05D001586 6.7e-07 58.2 56 46.4
Carub.0001s0321 Capsella rubella HOM05D000728 ORTHO05D001586 8.7e-07 57.8 62 40.3
Glyma.03G166800 Glycine max HOM05D000728 ORTHO05D001586 8.7e-07 57.8 61 47.5
Glyma.19G167900 Glycine max HOM05D000728 ORTHO05D001586 8.7e-07 57.8 61 47.5
Nitab4.5_0000845g0130 Nicotiana tabacum HOM05D000728 ORTHO05D001586 8.7e-07 57.8 62 46.8
Nitab4.5_0003342g0010 Nicotiana tabacum HOM05D000728 ORTHO05D001586 8.7e-07 57.8 62 46.8
Peaxi162Scf00043g02925 Petunia axillaris HOM05D000728 ORTHO05D001586 8.7e-07 57.8 56 51.8
Psat6g143800 Pisum sativum HOM05D000728 ORTHO05D001586 8.7e-07 57.8 56 48.2
Oeu039654.1 Olea europaea HOM05D000728 ORTHO05D001586 1.1e-06 57.4 62 41.9
Rhsim05G0171700 Rhododendron simsii HOM05D000728 ORTHO05D001586 1.1e-06 57.4 61 45.9
RcHm_v2.0_Chr6g0286831 Rosa chinensis HOM05D000728 ORTHO05D001586 1.1e-06 57.4 56 48.2
Solyc06g083760.3 Solanum lycopersicum HOM05D000728 ORTHO05D001586 1.1e-06 57.4 56 50.0
BcaC05g30227 Brassica carinata HOM05D000728 ORTHO05D001586 1.5e-06 57.0 74 36.5
COL.COLO4_10579 Corchorus olitorius HOM05D000728 ORTHO05D001586 1.5e-06 57.0 61 47.5
Nitab4.5_0009671g0030 Nicotiana tabacum HOM05D000728 ORTHO05D001586 1.9e-06 56.6 61 44.3
Os04g0692900 Oryza sativa ssp. japonica HOM05D000728 ORTHO05D001586 1.9e-06 56.6 52 51.9
PSO063G6429 Papaver somniferum HOM05D000728 ORTHO05D001586 1.9e-06 56.6 61 45.9
Atru.chr5.1823 Acer truncatum HOM05D000728 ORTHO05D001586 2.5e-06 56.2 60 43.3
Actinidia09520 Actinidia chinensis HOM05D000728 ORTHO05D001586 2.5e-06 56.2 48 50.0
Peaxi162Scf00517g00031 Petunia axillaris HOM05D000728 ORTHO05D001586 2.5e-06 56.2 59 47.5
Sp3g03280 Schrenkiella parvula HOM05D000728 ORTHO05D001586 2.5e-06 56.2 65 40.0
Sopen06g035170 Solanum pennellii HOM05D000728 ORTHO05D001586 2.5e-06 56.2 56 50.0
FvH4_2g20650 Fragaria vesca HOM05D000728 ORTHO05D001586 3.3e-06 55.8 56 46.4
FAN15G3455 Fragaria x ananassa HOM05D000728 ORTHO05D001586 3.3e-06 55.8 56 46.4
FAN20G2690 Fragaria x ananassa HOM05D000728 ORTHO05D001586 3.3e-06 55.8 56 46.4
FAN24G0471 Fragaria x ananassa HOM05D000728 ORTHO05D001586 3.3e-06 55.8 56 46.4
FAN27G1521 Fragaria x ananassa HOM05D000728 ORTHO05D001586 3.3e-06 55.8 56 46.4
Glyma.10G040100 Glycine max HOM05D000728 ORTHO05D001586 3.3e-06 55.8 55 50.9
HanXRQChr14g0451361 Helianthus annuus HOM05D000728 ORTHO05D001586 3.3e-06 55.8 69 40.6
Lalb_Chr20g0113661 Lupinus albus HOM05D000728 ORTHO05D001586 3.3e-06 55.8 61 47.5
Rhsim01G0261000 Rhododendron simsii HOM05D000728 ORTHO05D001586 3.3e-06 55.8 56 46.4
Sp2g08820 Schrenkiella parvula HOM05D000728 ORTHO05D001586 3.3e-06 55.8 62 40.3
Hund07183 Selenicereus undatus HOM05D000728 ORTHO05D001586 3.3e-06 55.8 57 47.4
Thhalv10003157m.g Eutrema salsugineum HOM05D000728 ORTHO05D001586 5.6e-06 55.1 62 40.3
QL03p029707 Quercus lobata HOM05D000728 ORTHO05D001586 5.6e-06 55.1 62 41.9
arahy.Tifrunner.gnm1.ann1.ZB9HG3 Arachis hypogaea HOM05D000728 ORTHO05D001586 7.4e-06 54.7 58 46.6
Psat6g062880 Pisum sativum HOM05D000728 ORTHO05D001586 7.4e-06 54.7 56 48.2
Carub.0008s0456 Capsella rubella HOM05D000728 ORTHO05D001586 9.6e-06 54.3 62 40.3
CDE08G0750 Ceratophyllum demersum HOM05D000728 ORTHO05D001586 9.6e-06 54.3 45 51.1
Lsat_1_v5_gn_9_91680 Lactuca sativa HOM05D001780 ORTHO05D005322 9.6e-06 54.3 48 50.0
Lj3A649G56 Lonicera japonica HOM05D000728 ORTHO05D001586 9.6e-06 54.3 61 44.3
PSO832G2412 Papaver somniferum HOM05D000728 ORTHO05D001586 9.6e-06 54.3 61 41.0
Peaxi162Scf00043g02919 Petunia axillaris HOM05D000728 ORTHO05D001586 9.6e-06 54.3 62 45.2
SHI26767 Sapria himalayana HOM05D000728 ORTHO05D001586 9.6e-06 54.3 52 46.2


User provided reference genes

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