Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 2.3e-139 498.8 244 100.0
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 1.9e-120 436.0 242 85.5
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 7.1e-120 434.1 240 84.6
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 3.9e-118 428.3 244 81.1
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 5.1e-118 427.9 242 83.9
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 5.1e-118 427.9 244 82.8
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 6.6e-118 427.6 246 83.7
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 1.5e-117 426.4 242 81.8
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 1.9e-117 426.0 244 82.4
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 2.5e-117 425.6 242 81.0
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 3.3e-117 425.2 244 82.8
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 2.1e-116 422.5 244 81.1
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.1e-116 422.5 244 81.1
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.8e-116 422.2 242 80.6
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 3.6e-116 421.8 242 80.6
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 3.6e-116 421.8 244 80.7
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 6.2e-116 421.0 242 81.0
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 1.4e-115 419.9 239 83.7
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 2.4e-115 419.1 242 82.2
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 2.4e-115 419.1 244 80.3
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 6.9e-115 417.5 244 80.3
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 1.2e-114 416.8 244 81.1
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 1.5e-114 416.4 244 80.7
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 1.5e-114 416.4 245 79.6
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 1.5e-114 416.4 242 82.6
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 2.0e-114 416.0 242 80.2
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 2.0e-114 416.0 241 80.9
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 2.0e-114 416.0 244 79.1
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 7.6e-114 414.1 246 80.9
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 1.3e-113 413.3 242 80.2
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 2.2e-113 412.5 244 79.1
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.9e-113 412.1 242 78.5
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 6.4e-113 411.0 244 79.1
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 6.4e-113 411.0 244 78.7
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 6.4e-113 411.0 246 80.5
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 6.4e-113 411.0 244 78.3
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 8.4e-113 410.6 242 76.0
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 8.4e-113 410.6 244 78.3
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 1.9e-112 409.5 241 80.1
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 2.4e-112 409.1 244 77.5
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 3.2e-112 408.7 260 75.8
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 4.2e-112 408.3 244 78.7
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 2.1e-111 406.0 238 79.4
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 2.7e-111 405.6 241 80.5
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 2.7e-111 405.6 244 77.5
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 2.7e-111 405.6 243 78.6
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 1.0e-110 403.7 245 76.7
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 1.0e-110 403.7 244 77.5
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 1.3e-110 403.3 244 75.8
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 2.3e-110 402.5 244 75.8
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 3.0e-110 402.1 244 76.6
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 5.1e-110 401.4 244 77.0
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 6.6e-110 401.0 243 77.8
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 1.1e-109 400.2 245 75.9
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 1.9e-109 399.4 244 76.6
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 2.5e-109 399.1 230 81.3
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 2.5e-109 399.1 244 77.0
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 2.5e-109 399.1 244 76.2
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 3.3e-109 398.7 245 75.5
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 3.3e-109 398.7 242 76.9
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 5.6e-109 397.9 245 75.1
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 5.6e-109 397.9 242 75.2
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.3e-108 396.7 242 77.7
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 1.6e-108 396.4 244 75.8
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 1.6e-108 396.4 243 77.0
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 2.1e-108 396.0 245 75.5
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 2.8e-108 395.6 242 75.6
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 2.8e-108 395.6 244 76.6
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 8.1e-108 394.0 282 69.1
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 1.1e-107 393.7 245 75.5
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 4.0e-107 391.7 229 81.7
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 6.9e-107 391.0 226 81.4
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 6.9e-107 391.0 272 69.5
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 5.8e-106 387.9 229 79.0
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 9.9e-106 387.1 242 74.8
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 1.7e-105 386.3 240 73.8
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 2.9e-105 385.6 242 75.6
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 7.1e-104 380.9 293 64.2
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 2.7e-103 379.0 241 73.0
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 2.7e-103 379.0 242 71.5
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 2.7e-103 379.0 274 67.9
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 2.3e-102 375.9 241 72.6
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 6.7e-102 374.4 252 71.0
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 1.1e-101 373.6 242 71.5
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 1.9e-101 372.9 242 71.1
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 7.4e-101 370.9 214 81.3
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 1.6e-100 369.8 239 69.0
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 3.1e-99 365.5 241 71.4
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 9.9e-98 360.5 210 79.0
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 1.7e-97 359.8 244 71.7
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 1.2e-95 353.6 326 56.7
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 3.0e-94 349.0 244 67.6
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.5e-93 346.7 203 78.8
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 1.4e-91 340.1 204 76.0
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 2.4e-91 339.3 205 78.0
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 1.1e-88 330.5 281 55.9
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 9.3e-88 327.4 252 60.3
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 1.2e-82 310.5 250 56.4
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 7.6e-82 307.8 241 62.7
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 7.6e-82 307.8 298 55.0
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.9e-81 305.8 241 63.5
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 6.5e-81 304.7 218 69.3
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 2.7e-71 272.7 316 44.3
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 4.5e-66 255.4 258 49.6
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 1.5e-61 240.4 249 49.0
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 9.1e-59 231.1 250 49.2
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 5.0e-57 225.3 340 42.6
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 6.5e-57 224.9 255 43.9
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 1.5e-56 223.8 241 46.9
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.2e-55 220.7 145 73.1
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 1.1e-51 207.6 110 82.7
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 5.9e-50 201.8 123 78.9
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 7.0e-43 178.3 120 69.2
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 4.4e-37 159.1 95 76.8
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 3.7e-36 156.0 83 80.7
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.5e-24 117.5 83 67.5
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.5e-24 117.5 83 67.5
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 1.5e-24 117.5 59 84.7
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.6e-21 106.7 75 68.0
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 1.1e-19 101.3 61 73.8
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 1.7e-17 94.0 63 69.8
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 5.6e-16 89.0 122 44.3
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 2.6e-13 80.1 51 68.6
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 7.5e-13 78.6 51 68.6
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 7.5e-13 78.6 51 68.6
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 7.1e-11 72.0 101 37.6
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 1.7e-09 67.4 43 65.1
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 8.6e-09 65.1 37 73.0
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 5.6e-08 62.4 65 47.7
PRCOL_00006618 Prasinoderma coloniale HOM05D000738 ORTHO05D000675 2.1e-07 60.5 70 40.0
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 2.8e-07 60.1 77 45.5
Cfa025444 Carpinus fangiana HOM05D005979 ORTHO05D122864 3.6e-07 59.7 87 37.9
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 8.1e-07 58.5 38 63.2
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 8.1e-07 58.5 73 47.9
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 1.1e-06 58.2 73 43.8
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 1.1e-06 58.2 73 41.1
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 1.4e-06 57.8 75 44.0
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.8e-06 57.4 77 40.3
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 2.4e-06 57.0 79 40.5
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 2.4e-06 57.0 79 40.5
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 3.1e-06 56.6 75 45.3
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 3.1e-06 56.6 87 36.8
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 3.1e-06 56.6 81 39.5
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 4.0e-06 56.2 72 44.4
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 5.2e-06 55.8 79 40.5
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 5.2e-06 55.8 75 42.7
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 6.8e-06 55.5 81 38.3
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 6.8e-06 55.5 58 46.6
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 8.9e-06 55.1 76 40.8


User provided reference genes

Program Settings