Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 0.0e+00 1340.5 943 100.0
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 0.0e+00 1112.4 945 86.3
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 0.0e+00 1094.0 945 84.9
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 0.0e+00 1086.6 933 85.7
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 0.0e+00 1075.8 931 84.4
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 6.5e-312 1074.7 931 84.4
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 1.6e-305 1052.7 945 83.5
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 2.3e-304 1048.9 947 83.9
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 8.9e-304 1047.0 945 82.6
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 2.9e-302 1042.0 935 82.8
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 4.1e-301 1038.1 933 82.9
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 1.0e-299 1033.5 938 80.4
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 1.0e-299 1033.5 933 82.4
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 2.3e-299 1032.3 938 82.0
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 1.9e-298 1029.2 944 81.7
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 1.2e-297 1026.5 933 81.8
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 2.8e-297 1025.4 959 77.8
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 2.2e-294 1015.8 933 82.3
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 1.2e-292 1010.0 932 70.5
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 3.9e-291 1005.0 957 79.9
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 3.3e-290 1001.9 933 80.2
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 7.3e-290 1000.7 943 81.1
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 4.7e-289 998.0 946 80.2
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 4.7e-289 998.0 1106 71.5
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 1.8e-288 996.1 983 65.1
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 7.6e-287 990.7 933 79.3
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 8.4e-286 987.3 933 79.2
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 4.2e-285 984.9 943 79.0
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 1.6e-284 983.0 944 77.9
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 1.3e-283 979.9 932 79.4
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 2.5e-282 975.7 933 68.9
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 1.3e-281 973.4 936 79.5
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 4.0e-280 968.4 933 76.0
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 6.9e-280 967.6 942 76.2
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 4.5e-279 964.9 944 78.4
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 9.9e-279 963.8 933 78.6
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 2.9e-278 962.2 936 79.0
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 8.4e-278 960.7 934 75.7
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 2.4e-277 959.1 943 78.8
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 8.7e-275 950.7 943 77.8
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 9.6e-274 947.2 934 78.3
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.1e-273 946.0 934 78.2
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 4.8e-273 944.9 931 77.7
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 1.8e-272 943.0 933 76.7
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.4e-272 942.6 934 78.1
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 2.0e-271 939.5 943 77.2
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 5.8e-271 937.9 943 76.7
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 7.6e-271 937.6 944 76.2
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 7.6e-271 937.6 934 77.8
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 1.3e-270 936.8 941 77.2
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 1.3e-270 936.8 932 78.1
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 4.9e-270 934.9 934 77.0
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 4.9e-270 934.9 934 77.7
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 6.4e-270 934.5 943 77.0
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 3.2e-269 932.2 934 77.5
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 3.2e-269 932.2 934 76.4
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 7.1e-269 931.0 983 74.5
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 6.0e-268 927.9 942 76.9
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 7.9e-268 927.5 934 74.9
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 7.9e-268 927.5 934 78.1
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 2.3e-267 926.0 953 66.6
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 1.9e-266 922.9 931 76.0
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 3.3e-266 922.2 936 76.8
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 4.3e-266 921.8 944 75.2
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 9.6e-266 920.6 933 77.0
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 2.1e-265 919.5 933 74.7
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 1.4e-264 916.8 932 74.4
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 1.4e-264 916.8 956 70.9
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 4.0e-264 915.2 936 76.1
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 2.0e-263 912.9 943 75.7
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 3.4e-263 912.1 933 76.1
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 5.8e-263 911.4 729 81.3
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 5.8e-263 911.4 933 76.5
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 2.2e-262 909.4 933 76.1
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 2.2e-262 909.4 933 76.1
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 2.2e-262 909.4 937 68.0
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 2.9e-262 909.1 939 72.6
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 7.9e-260 901.0 922 75.7
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 1.0e-259 900.6 944 76.2
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 1.8e-259 899.8 933 75.5
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 6.7e-259 897.9 935 75.6
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 6.7e-259 897.9 937 69.4
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 8.2e-257 891.0 969 62.4
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 7.7e-255 884.4 974 53.7
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 1.7e-254 883.2 947 73.6
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 2.9e-254 882.5 946 71.4
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 6.5e-254 881.3 954 70.2
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.0e-251 874.0 933 74.6
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 2.5e-250 869.4 943 74.1
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 8.8e-243 844.3 942 73.2
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 1.7e-238 830.1 819 80.7
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 5.0e-238 828.6 883 73.8
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 8.0e-236 821.2 935 68.6
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 9.7e-234 814.3 947 71.7
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 1.1e-232 810.8 949 72.3
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 1.6e-231 807.0 949 70.7
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 3.3e-226 789.3 938 67.2
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 7.5e-226 788.1 856 76.2
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 1.1e-224 784.3 924 70.0
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 3.6e-220 769.2 1001 62.5
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 7.5e-210 734.9 941 67.0
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 1.4e-203 714.1 944 58.4
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 1.7e-201 707.2 922 64.4
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.0e-190 671.4 857 66.7
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 7.1e-184 648.7 695 68.3
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 3.9e-174 616.3 931 59.9
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 1.3e-169 601.3 931 59.2
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.7e-166 590.9 942 57.3
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.7e-166 590.9 942 57.3
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 3.2e-160 570.1 938 57.7
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 1.6e-156 557.8 968 58.4
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 1.7e-137 494.6 646 47.8
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 8.2e-132 475.7 575 67.0
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 3.4e-109 400.6 938 48.5
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 8.3e-108 396.0 293 71.0
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 3.2e-104 384.0 589 42.6
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 6.8e-102 376.3 950 44.0
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 6.8e-78 296.6 722 44.3
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.3e-57 228.4 185 65.4
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 7.1e-51 206.8 135 72.6
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 7.9e-50 203.4 127 76.4
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 1.9e-48 198.7 142 67.6
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 4.8e-39 167.5 125 64.8
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 6.9e-38 163.7 188 48.4
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 2.9e-36 158.3 115 68.7
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 6.0e-34 150.6 116 61.2
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 7.9e-34 150.2 137 56.2
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 6.9e-22 110.5 77 71.4
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 1.5e-21 109.4 77 72.7
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 1.0e-20 106.7 88 53.4
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 1.4e-19 102.8 77 67.5
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 2.5e-19 102.1 82 61.0
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 5.5e-19 100.9 80 60.0
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 2.1e-18 99.0 87 62.1
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 6.7e-17 94.0 68 70.6
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 8.8e-17 93.6 80 66.2
PGSC0003DMG400036928 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.7e-12 79.3 103 51.5
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 1.9e-11 75.9 52 73.1
Psat3g191240 Pisum sativum HOM05D005316 ORTHO05D006495 2.3e-09 68.9 50 68.0
Lalb_Chr03g0036201 Lupinus albus HOM05D000836 ORTHO05D000709 7.4e-08 63.9 143 28.0
CANSAT78G1202 Cannabis sativa HOM05D000836 ORTHO05D000709 1.3e-07 63.2 136 27.2
Sed0000820 Sechium edule HOM05D000836 ORTHO05D000709 8.2e-07 60.5 118 28.8
BraA04t18027Z Brassica rapa HOM05D000836 ORTHO05D000709 1.4e-06 59.7 183 26.2
CiPaw.01G122500 Carya illinoinensis HOM05D000836 ORTHO05D000709 1.4e-06 59.7 146 24.7
A04p25240 Brassica napus HOM05D000836 ORTHO05D000709 1.8e-06 59.3 183 27.9
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 3.1e-06 58.5 56 53.6
Zm00001eb258660 Zea mays HOM05D000836 ORTHO05D000709 3.1e-06 58.5 136 27.9
Lalb_Chr01g0010231 Lupinus albus HOM05D000836 ORTHO05D000709 9.1e-06 57.0 136 25.0


User provided reference genes

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