Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 2.1e-269 931.8 472 100.0
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 3.9e-191 671.8 508 71.5
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 1.1e-190 670.2 492 70.7
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 3.7e-189 665.2 487 72.5
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 1.4e-188 663.3 496 70.6
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 1.4e-185 653.3 507 70.2
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 2.4e-185 652.5 507 69.6
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 7.1e-185 651.0 494 70.6
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 1.6e-184 649.8 505 68.9
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 1.1e-180 637.1 507 68.0
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 5.8e-179 631.3 507 67.7
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 2.9e-178 629.0 485 70.5
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 8.4e-178 627.5 492 68.9
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 4.2e-177 625.2 496 67.1
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 7.1e-177 624.4 501 69.5
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 3.5e-176 622.1 500 68.4
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 1.8e-175 619.8 487 70.0
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 6.7e-175 617.8 481 69.2
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 1.5e-174 616.7 494 68.0
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 5.7e-174 614.8 501 67.5
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 9.7e-174 614.0 499 66.1
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 8.2e-173 610.9 490 67.6
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 4.1e-172 608.6 501 67.1
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 2.6e-171 605.9 495 65.3
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 2.6e-171 605.9 451 71.4
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 2.1e-168 596.3 501 64.1
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 2.1e-168 596.3 539 60.7
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 6.1e-168 594.7 492 65.7
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 6.7e-167 591.3 448 70.1
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 4.3e-166 588.6 464 67.5
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 7.4e-166 587.8 497 64.0
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 7.4e-166 587.8 482 66.8
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 7.4e-166 587.8 518 63.1
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 9.7e-166 587.4 503 63.4
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 1.7e-165 586.6 462 68.6
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 2.2e-165 586.3 494 64.4
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 2.2e-165 586.3 501 63.3
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 2.8e-165 585.9 499 63.3
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 2.8e-165 585.9 487 66.1
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 3.7e-165 585.5 492 64.6
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 8.2e-165 584.3 464 67.2
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 1.4e-164 583.6 483 65.2
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 4.1e-164 582.0 466 67.0
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 1.2e-163 580.5 460 66.7
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.3e-162 577.0 487 64.1
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 1.3e-162 577.0 482 66.0
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 1.7e-162 576.6 476 65.3
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 2.2e-162 576.2 493 62.7
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 2.9e-162 575.9 460 66.5
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 5.0e-162 575.1 487 64.1
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 2.5e-161 572.8 495 63.8
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 3.2e-161 572.4 507 63.3
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 1.6e-160 570.1 487 63.7
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 1.6e-160 570.1 472 65.9
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.1e-160 569.7 487 63.7
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 7.9e-160 567.8 432 69.0
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 7.9e-160 567.8 494 62.1
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 1.0e-159 567.4 470 63.2
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 2.3e-159 566.2 487 63.7
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 3.0e-159 565.8 483 63.6
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 5.1e-159 565.1 495 61.4
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 6.7e-159 564.7 497 61.4
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 8.8e-159 564.3 498 61.0
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 1.1e-158 563.9 486 63.6
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 2.0e-158 563.1 492 62.6
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 3.3e-158 562.4 433 67.7
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 5.7e-158 561.6 468 66.5
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 6.3e-157 558.1 506 62.1
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 6.9e-156 554.7 395 74.2
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 3.4e-155 552.4 482 62.2
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 1.7e-154 550.1 494 61.3
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 3.8e-154 548.9 486 62.6
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 2.5e-153 546.2 464 62.7
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 3.6e-152 542.3 482 61.0
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 6.7e-151 538.1 499 59.7
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 2.0e-150 536.6 503 59.4
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 2.6e-150 536.2 409 68.7
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 4.4e-150 535.4 489 60.7
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 9.7e-150 534.3 509 58.3
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 2.4e-148 529.6 400 69.5
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 4.1e-148 528.9 412 66.3
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 2.2e-146 523.1 484 58.9
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 2.9e-146 522.7 436 65.4
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 1.8e-143 513.5 439 66.3
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 1.8e-143 513.5 460 59.3
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 2.8e-141 506.1 547 53.7
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 1.8e-140 503.4 362 69.1
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 4.5e-139 498.8 491 56.6
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 3.8e-138 495.7 426 61.3
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 1.0e-135 487.6 485 56.7
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 2.3e-135 486.5 357 71.7
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 2.0e-134 483.4 405 62.2
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 2.3e-130 469.9 480 54.0
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 3.4e-126 456.1 386 60.1
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 3.7e-125 452.6 411 56.9
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 8.6e-122 441.4 471 53.7
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 8.0e-120 434.9 425 53.9
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 6.0e-115 418.7 460 52.6
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 1.9e-108 397.1 375 58.4
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 7.0e-108 395.2 329 60.8
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 1.2e-107 394.4 381 55.1
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 3.0e-106 389.8 305 65.2
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 1.4e-103 380.9 360 56.7
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 2.7e-99 366.7 406 49.8
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 8.1e-96 355.1 432 46.1
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 2.4e-95 353.6 466 46.1
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 2.6e-94 350.1 455 44.8
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.9e-93 346.7 381 50.7
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 4.9e-93 345.9 256 68.8
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 6.0e-83 312.4 400 43.8
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 3.0e-82 310.1 351 52.1
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 8.7e-82 308.5 259 62.2
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 2.4e-79 300.4 438 41.1
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 2.7e-67 260.4 331 45.9
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 6.7e-66 255.8 258 54.3
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 6.7e-66 255.8 353 43.3
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 1.1e-57 228.4 480 35.2
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 7.2e-44 182.6 457 29.8
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 8.2e-40 169.1 283 40.6
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 2.6e-38 164.1 140 66.4
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 3.0e-34 150.6 118 66.9
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 1.5e-33 148.3 127 64.6
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 1.5e-33 148.3 186 50.5
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 7.0e-23 112.8 103 53.4
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 1.0e-18 99.0 128 52.3
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 4.0e-18 97.1 166 37.3
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 8.8e-18 95.9 163 39.3
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 1.3e-16 92.0 154 46.1
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 6.3e-16 89.7 89 52.8
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 2.4e-15 87.8 67 59.7
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 4.2e-12 77.0 62 67.7
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 2.8e-11 74.3 252 28.2
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 1.4e-10 72.0 152 38.8
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 3.0e-10 70.9 54 59.3
Psat5g095160 Pisum sativum HOM05D001167 ORTHO05D036681 5.7e-09 66.6 73 57.5
BcaB03g15197 Brassica carinata HOM05D063035 ORTHO05D093409 2.8e-08 64.3 111 43.2
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 8.3e-08 62.8 64 45.3


User provided reference genes

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