Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 6.8e-114 414.1 218 100.0
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 3.3e-108 395.2 218 92.7
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 9.5e-108 393.7 218 94.5
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 2.8e-107 392.1 218 89.9
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 6.1e-107 391.0 217 92.2
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 1.0e-106 390.2 218 89.9
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 6.8e-106 387.5 218 92.7
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 8.9e-106 387.1 218 92.2
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 1.5e-105 386.3 218 89.9
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 2.0e-105 386.0 218 92.2
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 3.4e-105 385.2 215 89.3
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 3.4e-105 385.2 218 91.7
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 1.3e-104 383.3 218 87.6
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 2.2e-104 382.5 218 90.8
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 2.9e-104 382.1 218 92.2
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 2.9e-104 382.1 216 88.0
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 3.7e-104 381.7 218 90.8
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 3.7e-104 381.7 218 90.8
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 3.7e-104 381.7 218 90.8
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 3.7e-104 381.7 218 90.8
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 4.9e-104 381.3 218 87.2
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 4.9e-104 381.3 218 90.4
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 6.4e-104 380.9 218 88.5
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 8.3e-104 380.6 218 89.9
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 1.1e-103 380.2 218 87.2
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 1.1e-103 380.2 220 90.9
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 1.4e-103 379.8 218 88.1
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 1.8e-103 379.4 218 89.9
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 1.8e-103 379.4 218 91.3
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 4.1e-103 378.3 211 91.0
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 4.1e-103 378.3 218 85.8
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 9.2e-103 377.1 217 89.9
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 2.7e-102 375.6 218 87.2
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 2.7e-102 375.6 218 87.2
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 2.7e-102 375.6 217 89.9
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 4.6e-102 374.8 217 85.3
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 5.9e-102 374.4 218 87.6
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 7.8e-102 374.0 218 88.1
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 1.0e-101 373.6 218 86.2
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 1.3e-101 373.2 218 87.2
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 3.0e-101 372.1 218 85.3
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 3.0e-101 372.1 218 85.3
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 3.0e-101 372.1 218 89.4
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 3.9e-101 371.7 218 86.7
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 3.9e-101 371.7 207 91.8
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 3.9e-101 371.7 218 88.5
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 5.0e-101 371.3 218 85.8
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 5.0e-101 371.3 218 87.6
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 6.6e-101 370.9 218 87.2
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 8.6e-101 370.5 215 85.1
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 8.6e-101 370.5 211 88.2
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 8.6e-101 370.5 218 84.9
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 1.1e-100 370.2 218 85.3
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 1.5e-100 369.8 218 87.2
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 1.9e-100 369.4 218 86.7
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 1.9e-100 369.4 218 84.4
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 1.9e-100 369.4 218 85.3
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 9.5e-100 367.1 218 85.8
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.2e-99 366.7 209 91.9
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 2.8e-99 365.5 218 85.8
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 2.8e-99 365.5 218 87.2
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 2.8e-99 365.5 215 84.2
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 2.8e-99 365.5 215 84.2
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 4.7e-99 364.8 218 86.7
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 6.2e-99 364.4 215 83.7
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 8.0e-99 364.0 218 85.3
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 5.2e-98 361.3 218 88.1
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.6e-97 359.0 217 84.3
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 3.4e-97 358.6 217 84.3
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 4.4e-97 358.2 219 85.4
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 5.8e-97 357.8 211 84.8
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 7.5e-97 357.5 219 85.4
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 7.5e-97 357.5 219 85.4
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 9.8e-97 357.1 219 85.4
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 9.8e-97 357.1 219 85.4
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 9.8e-97 357.1 294 67.3
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.2e-96 355.9 214 83.6
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 3.7e-96 355.1 218 81.2
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 8.3e-96 354.0 219 84.9
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 1.9e-95 352.8 206 85.4
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 1.9e-95 352.8 207 85.5
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 2.4e-95 352.4 223 79.4
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 4.1e-95 351.7 221 83.3
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 5.4e-95 351.3 207 85.0
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 1.2e-94 350.1 218 79.8
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 2.0e-94 349.4 206 85.4
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 7.8e-94 347.4 220 80.5
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 7.8e-94 347.4 218 78.0
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 3.9e-93 345.1 207 83.6
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 5.0e-93 344.7 202 85.1
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 6.6e-93 344.4 202 85.1
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 6.6e-93 344.4 215 82.3
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 2.5e-92 342.4 221 78.3
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 3.3e-92 342.0 211 84.4
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 1.2e-91 340.1 218 77.1
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 3.6e-91 338.6 218 80.3
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 2.6e-89 332.4 277 64.3
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 1.7e-88 329.7 218 76.1
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 3.7e-88 328.6 196 83.7
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 1.9e-87 326.2 215 76.3
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 3.2e-87 325.5 215 78.1
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 3.2e-87 325.5 218 76.6
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 5.4e-87 324.7 215 75.8
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 3.5e-86 322.0 215 75.3
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 3.5e-86 322.0 211 73.9
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 1.7e-85 319.7 201 76.6
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 8.9e-82 307.4 185 83.2
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 4.4e-81 305.1 185 84.9
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 3.0e-77 292.4 201 74.6
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 6.6e-77 291.2 174 83.9
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 8.6e-77 290.8 164 86.0
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 2.5e-76 289.3 173 83.2
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 1.9e-71 273.1 210 65.2
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 9.3e-71 270.8 219 58.4
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 1.1e-68 263.8 218 69.7
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 4.8e-67 258.5 210 60.5
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 1.8e-61 240.0 139 84.9
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 6.7e-61 238.0 145 83.4
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 1.5e-60 236.9 210 57.6
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 1.6e-59 233.4 145 84.1
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 1.8e-58 229.9 212 59.4
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 3.5e-54 215.7 176 67.0
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 8.7e-53 211.1 148 77.7
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 4.5e-49 198.7 215 53.0
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 8.4e-48 194.5 110 85.5
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 1.1e-47 194.1 119 82.4
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 1.5e-44 183.7 174 56.9
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 6.9e-42 174.9 162 54.3
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 1.0e-37 161.0 215 47.4
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 8.5e-32 141.4 89 83.1
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 3.2e-31 139.4 84 83.3
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 1.4e-26 124.0 96 74.0
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 1.2e-17 94.4 48 91.7
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 1.6e-17 94.0 55 80.0
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 5.0e-16 89.0 53 75.5
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 5.0e-16 89.0 46 87.0
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 1.4e-13 80.9 66 66.7
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 3.3e-12 76.3 99 47.5
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 2.2e-08 63.5 34 91.2
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 6.5e-08 62.0 34 91.2
Lj4A782T80 Lonicera japonica HOM05D005338 ORTHO05D234559 2.7e-06 56.6 34 100.0


User provided reference genes

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