Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3326.1 Carica papaya HOM05D004510 ORTHO05D005302 2.2e-151 538.9 263 100.0
Duzib150G0176 Durio zibethinus HOM05D004510 ORTHO05D005302 9.0e-113 410.6 231 86.1
TAR623G1468 Trochodendron aralioides HOM05D004510 ORTHO05D005302 2.2e-111 406.0 230 85.2
CiPaw.13G135100 Carya illinoinensis HOM05D004510 ORTHO05D005302 1.1e-110 403.7 230 84.8
Thecc.09G282400 Theobroma cacao HOM05D004510 ORTHO05D005302 1.1e-110 403.7 231 84.8
COL.COLO4_19854 Corchorus olitorius HOM05D004510 ORTHO05D005302 1.9e-110 402.9 231 84.8
Gohir.D08G015800 Gossypium hirsutum HOM05D004510 ORTHO05D005302 2.5e-110 402.5 231 83.5
Gorai.004G010100 Gossypium raimondii HOM05D004510 ORTHO05D005302 2.5e-110 402.5 231 83.5
Gohir.A08G005400 Gossypium hirsutum HOM05D004510 ORTHO05D005302 4.2e-110 401.7 231 83.5
Dinv22838 Davidia involucrata HOM05D004510 ORTHO05D005302 5.5e-110 401.4 231 84.0
Atru.chr3.3236 Acer truncatum HOM05D004510 ORTHO05D005302 7.2e-110 401.0 230 85.2
CSS0020343 Camellia sinensis var. sinensis HOM05D004510 ORTHO05D005302 7.2e-110 401.0 230 83.5
Sed0027037 Sechium edule HOM05D004510 ORTHO05D005302 9.3e-110 400.6 251 78.5
Manes.11G162300 Manihot esculenta HOM05D004510 ORTHO05D005302 1.2e-109 400.2 230 84.8
QL01p012154 Quercus lobata HOM05D004510 ORTHO05D005302 2.1e-109 399.4 230 84.8
MELO3C004700.2 Cucumis melo HOM05D004510 ORTHO05D005302 2.7e-109 399.1 251 78.9
CsaV3_1G014870 Cucumis sativus L. HOM05D004510 ORTHO05D005302 2.7e-109 399.1 251 78.9
Hma1.2p1_0587F.1_g184290 Hydrangea macrophylla HOM05D004510 ORTHO05D005302 1.0e-108 397.1 238 80.7
GSVIVG01036116001 Vitis vinifera HOM05D004510 ORTHO05D005302 1.0e-108 397.1 230 83.5
Sabra04G0136400 Salix brachista HOM05D004510 ORTHO05D005302 1.3e-108 396.7 230 83.5
Haze_23369 Corylus avellana HOM05D004510 ORTHO05D005302 1.8e-108 396.4 230 84.3
THA.LOC104826427 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 1.8e-108 396.4 230 84.8
Potri.004G201800 Populus trichocarpa HOM05D004510 ORTHO05D005302 6.7e-108 394.4 230 83.5
Aa31LG5G8800 Aethionema arabicum HOM05D004510 ORTHO05D005302 1.5e-107 393.3 258 76.4
MD03G1145900 Malus domestica HOM05D004510 ORTHO05D005302 1.5e-107 393.3 230 81.7
Carub.0004s0808 Capsella rubella HOM05D004510 ORTHO05D005302 2.5e-107 392.5 241 78.8
Ciclev10027862m.g Citrus clementina HOM05D004510 ORTHO05D005302 2.5e-107 392.5 230 83.9
Sabra09G0127400 Salix brachista HOM05D004510 ORTHO05D005302 3.3e-107 392.1 229 83.4
Potri.009G163300 Populus trichocarpa HOM05D004510 ORTHO05D005302 4.3e-107 391.7 229 83.0
AL4G21450 Arabidopsis lyrata HOM05D004510 ORTHO05D005302 5.7e-107 391.3 241 78.8
AT2G27460 Arabidopsis thaliana HOM05D004510 ORTHO05D005302 5.7e-107 391.3 241 78.8
CARHR120110 Cardamine hirsuta HOM05D004510 ORTHO05D005302 5.7e-107 391.3 231 81.8
Actinidia24221 Actinidia chinensis HOM05D004510 ORTHO05D005302 7.4e-107 391.0 229 82.1
Nitab4.5_0000755g0090 Nicotiana tabacum HOM05D004510 ORTHO05D005302 9.7e-107 390.6 230 81.7
PGR102G0622 Punica granatum HOM05D004510 ORTHO05D005302 9.7e-107 390.6 251 76.9
Oeu035565.1 Olea europaea HOM05D004510 ORTHO05D005302 1.3e-106 390.2 251 76.1
vmacro03323 Vaccinium macrocarpon HOM05D004510 ORTHO05D005302 1.3e-106 390.2 230 83.0
BolC4t27208H Brassica oleracea HOM05D004510 ORTHO05D005302 1.6e-106 389.8 252 76.6
DCAR_010345 Daucus carota HOM05D004510 ORTHO05D005302 3.7e-106 388.7 251 76.9
Nitab4.5_0012235g0010 Nicotiana tabacum HOM05D004510 ORTHO05D005302 4.8e-106 388.3 230 81.3
Prupe.6G130700 Prunus persica HOM05D004510 ORTHO05D005302 4.8e-106 388.3 230 81.7
Sp4g10250 Schrenkiella parvula HOM05D004510 ORTHO05D005302 6.3e-106 387.9 231 81.4
THA.LOC104815723 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 6.3e-106 387.9 231 84.0
PGSC0003DMG400026338 Solanum tuberosum HOM05D004510 ORTHO05D005302 1.4e-105 386.7 230 81.3
Cc01_g09050 Coffea canephora HOM05D004510 ORTHO05D005302 4.1e-105 385.2 230 80.0
Thhalv10016271m.g Eutrema salsugineum HOM05D004510 ORTHO05D005302 4.1e-105 385.2 241 77.2
C04p56760 Brassica napus HOM05D004510 ORTHO05D005302 5.3e-105 384.8 231 81.4
CANSAT54G0764 Cannabis sativa HOM05D004510 ORTHO05D005302 5.3e-105 384.8 252 76.6
Hund18760 Selenicereus undatus HOM05D004510 ORTHO05D005302 9.1e-105 384.0 252 77.0
MD11G1164800 Malus domestica HOM05D004510 ORTHO05D005302 1.2e-104 383.6 230 80.0
Sopen11g027210 Solanum pennellii HOM05D004510 ORTHO05D005302 1.5e-104 383.3 230 80.4
A04p20970 Brassica napus HOM05D004510 ORTHO05D005302 2.0e-104 382.9 252 75.8
BraA04t17666Z Brassica rapa HOM05D004510 ORTHO05D005302 2.0e-104 382.9 252 75.8
RcHm_v2.0_Chr5g0044841 Rosa chinensis HOM05D004510 ORTHO05D005302 2.6e-104 382.5 230 80.9
Peaxi162Scf00040g00020 Petunia axillaris HOM05D004510 ORTHO05D005302 3.4e-104 382.1 230 80.4
CAN.G1524.4 Capsicum annuum HOM05D004510 ORTHO05D005302 5.9e-104 381.3 230 80.4
Solyc11g068500.2 Solanum lycopersicum HOM05D004510 ORTHO05D005302 5.9e-104 381.3 230 80.0
BcaB02g10090 Brassica carinata HOM05D004510 ORTHO05D005302 7.7e-104 380.9 231 80.5
Phvul.011G094800 Phaseolus vulgaris HOM05D004510 ORTHO05D005302 2.9e-103 379.0 233 78.5
BcaC02g10877 Brassica carinata HOM05D004510 ORTHO05D005302 3.8e-103 378.6 231 80.1
C04p24140 Brassica napus HOM05D004510 ORTHO05D005302 3.8e-103 378.6 231 80.1
BolC4t23911H Brassica oleracea HOM05D004510 ORTHO05D005302 3.8e-103 378.6 231 80.1
Aqoxy4G02763 Aquilegia oxysepala HOM05D004510 ORTHO05D005302 5.0e-103 378.3 230 80.9
FAN16G1814 Fragaria x ananassa HOM05D004510 ORTHO05D005302 6.5e-103 377.9 230 80.0
VMungo1127G0197 Vigna mungo HOM05D004510 ORTHO05D005302 6.5e-103 377.9 233 78.1
Glyma.12G089700 Glycine max HOM05D004510 ORTHO05D005302 8.5e-103 377.5 235 78.7
Lj3g0009034 Lotus japonicus HOM05D004510 ORTHO05D005302 8.5e-103 377.5 230 80.0
Medtr4g052930 Medicago truncatula HOM05D004510 ORTHO05D005302 8.5e-103 377.5 231 79.7
Nn6g34880 Nelumbo nucifera HOM05D004510 ORTHO05D005302 8.5e-103 377.5 237 80.6
A07p18220 Brassica napus HOM05D004510 ORTHO05D005302 1.1e-102 377.1 231 79.7
PSO339G0142 Papaver somniferum HOM05D004510 ORTHO05D005302 1.1e-102 377.1 251 74.9
PSO384G2406 Papaver somniferum HOM05D004510 ORTHO05D005302 1.1e-102 377.1 251 74.9
BraA07t29538Z Brassica rapa HOM05D004510 ORTHO05D005302 1.4e-102 376.7 232 79.7
TPR.G17233 Trifolium pratense HOM05D004510 ORTHO05D005302 1.9e-102 376.3 231 79.2
FAN25G2046 Fragaria x ananassa HOM05D004510 ORTHO05D005302 2.5e-102 375.9 230 79.6
FAN21G2427 Fragaria x ananassa HOM05D004510 ORTHO05D005302 3.2e-102 375.6 231 80.1
Ah.08g215670 Amaranthus hybridus HOM05D004510 ORTHO05D005302 4.2e-102 375.2 238 77.3
FvH4_3g24980 Fragaria vesca HOM05D004510 ORTHO05D005302 7.2e-102 374.4 231 79.7
FAN11G3425 Fragaria x ananassa HOM05D004510 ORTHO05D005302 7.2e-102 374.4 231 79.7
EL10Ac7g15829 Beta vulgaris HOM05D004510 ORTHO05D005302 9.4e-102 374.0 231 79.7
AUR62009750 Chenopodium quinoa HOM05D004510 ORTHO05D005302 9.4e-102 374.0 252 73.4
Glyma.11G182800 Glycine max HOM05D004510 ORTHO05D005302 9.4e-102 374.0 235 77.9
Psat7g187800 Pisum sativum HOM05D004510 ORTHO05D005302 9.4e-102 374.0 231 78.8
Sc21g0007070 Simmondsia chinensis HOM05D004510 ORTHO05D005302 9.4e-102 374.0 230 79.6
arahy.Tifrunner.gnm1.ann1.G66SVD Arachis hypogaea HOM05D004510 ORTHO05D005302 1.2e-101 373.6 230 78.7
Eucgr.B03845 Eucalyptus grandis HOM05D004510 ORTHO05D005302 1.6e-101 373.2 230 79.1
Lalb_Chr03g0028121 Lupinus albus HOM05D004510 ORTHO05D005302 1.6e-101 373.2 230 78.7
HanXRQChr16g0526961 Helianthus annuus HOM05D004510 ORTHO05D005302 2.7e-101 372.5 230 77.4
arahy.Tifrunner.gnm1.ann1.CJK6JS Arachis hypogaea HOM05D004510 ORTHO05D005302 3.6e-101 372.1 230 78.3
AUR62036195 Chenopodium quinoa HOM05D004510 ORTHO05D005302 3.6e-101 372.1 231 78.8
Lalb_Chr19g0136431 Lupinus albus HOM05D004510 ORTHO05D005302 3.6e-101 372.1 230 79.1
SalBow3G0413 Salvia bowleyana HOM05D004510 ORTHO05D005302 1.4e-100 370.2 251 72.1
Ca_19411_v3 Cicer arietinum L. HOM05D004510 ORTHO05D005302 1.8e-100 369.8 231 77.9
ECA233G5657 Erigeron canadensis HOM05D004510 ORTHO05D005302 1.8e-100 369.8 251 72.5
Gohir.D05G083300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 5.1e-100 368.2 266 72.6
Migut.N02488 Erythranthe guttata HOM05D004510 ORTHO05D005302 8.8e-100 367.5 251 70.9
HanXRQChr13g0397471 Helianthus annuus HOM05D004510 ORTHO05D005302 2.6e-99 365.9 230 76.1
Lsat_1_v5_gn_6_38881 Lactuca sativa HOM05D004510 ORTHO05D005302 2.2e-98 362.8 230 76.5
CDE06G1114 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 1.4e-97 360.1 230 76.1
SGA_v2.0_scaffold295G47522 Striga asiatica HOM05D004510 ORTHO05D005302 3.1e-97 359.0 251 70.5
CDE08G1408 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 4.1e-97 358.6 230 77.0
Rhsim13G0112600 Rhododendron simsii HOM05D004510 ORTHO05D005302 4.1e-97 358.6 288 66.0
HPP92_011904 Vanilla planifolia HOM05D004510 ORTHO05D005302 1.2e-96 357.1 230 76.5
ATR0776G017 Amborella trichopoda HOM05D004510 ORTHO05D005302 4.5e-96 355.1 230 77.0
TWI31G0469 Tripterygium wilfordii HOM05D004510 ORTHO05D005302 7.7e-96 354.4 230 77.0
SGA_v2.0_scaffold177G39411 Striga asiatica HOM05D004510 ORTHO05D005302 1.7e-95 353.2 230 73.9
unitig_8.g2975 Utricularia gibba HOM05D001558 ORTHO05D005302 8.5e-95 350.9 230 72.6
Lj1C236G5 Lonicera japonica HOM05D004510 ORTHO05D005302 2.5e-94 349.4 363 54.0
Gorai.009G085000 Gossypium raimondii HOM05D004510 ORTHO05D005302 6.1e-93 344.7 249 71.1
SEGI_33849 Sequoiadendron giganteum HOM05D004510 ORTHO05D005302 7.4e-91 337.8 230 72.2
Os05g0443300 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 3.3e-83 312.4 230 65.7
Zm00001eb348320 Zea mays HOM05D004510 ORTHO05D005302 1.3e-82 310.5 230 67.0
SHI33806 Sapria himalayana HOM05D000105 ORTHO05D000023 2.2e-82 309.7 230 67.4
Zm00001eb288910 Zea mays HOM05D004510 ORTHO05D005302 6.3e-82 308.1 230 65.7
Mapoly0020s0029 Marchantia polymorpha HOM05D004510 ORTHO05D005302 3.8e-79 298.9 239 61.1
Pp3c9_6480 Physcomitrium patens HOM05D004510 ORTHO05D005302 1.4e-76 290.4 239 59.4
AagrBONN_evm.TU.Sc2ySwM_369.588 Anthoceros agrestis HOM05D004510 ORTHO05D005302 3.7e-74 282.3 244 56.1
Pp3c9_12900 Physcomitrium patens HOM05D004510 ORTHO05D005302 1.6e-72 276.9 239 57.7
SMO119G0407 Selaginella moellendorffii HOM05D004510 ORTHO05D005302 1.3e-71 273.9 230 59.1
Os04g0412900 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 1.7e-71 273.5 248 57.3
CBR_g98 Chara braunii HOM05D004510 ORTHO05D005302 1.2e-67 260.8 276 48.6
Zm00001eb421940 Zea mays HOM05D004510 ORTHO05D005302 6.3e-66 255.0 229 57.2
Gohir.A05G080300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 3.1e-65 252.7 203 65.0
RcHm_v2.0_Chr5g0045601 Rosa chinensis HOM05D004510 ORTHO05D005302 4.1e-65 252.3 168 75.6
Dinv42548 Davidia involucrata HOM05D004510 ORTHO05D005302 8.6e-63 244.6 139 84.2
ClCG01G011880 Citrullus lanatus HOM05D004510 ORTHO05D005302 1.0e-60 237.7 155 76.8
RcHm_v2.0_Chr5g0040981 Rosa chinensis HOM05D004510 ORTHO05D005302 6.6e-55 218.4 132 82.6
RcHm_v2.0_Chr5g0044471 Rosa chinensis HOM05D004510 ORTHO05D005302 9.2e-41 171.4 108 81.5
MBI17_g08333_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 7.3e-38 161.8 96 81.2
PRCOL_00001783 Prasinoderma coloniale HOM05D004510 ORTHO05D005302 5.2e-36 155.6 254 36.6
Cpa.g.sc32.21 Carica papaya HOM05D004510 ORTHO05D005302 1.6e-32 144.1 65 98.5
MCO07G305 Micromonas commoda HOM05D004510 ORTHO05D005302 1.1e-30 137.9 227 35.2
ClCG01G011910 Citrullus lanatus HOM05D004510 ORTHO05D005302 4.7e-29 132.5 65 87.7
Pp3c9_6470 Physcomitrium patens HOM05D004510 ORTHO05D005302 1.4e-28 131.0 92 70.7
Gorai.007G089400 Gossypium raimondii HOM05D004510 ORTHO05D005302 7.6e-27 125.2 65 83.1
Gohir.D11G227001 Gossypium hirsutum HOM05D004510 ORTHO05D005302 2.2e-26 123.6 59 91.5
Gohir.D06G076550 Gossypium hirsutum HOM05D004510 ORTHO05D005302 6.4e-26 122.1 65 83.1
RcHm_v2.0_Chr5g0044481 Rosa chinensis HOM05D004510 ORTHO05D005302 1.2e-24 117.9 64 81.2
CSS0032823 Camellia sinensis var. sinensis HOM05D000557 ORTHO05D005302 3.0e-23 113.2 79 69.6
RcHm_v2.0_Chr5g0016621 Rosa chinensis HOM05D004510 ORTHO05D005302 8.7e-23 111.7 64 76.6
RcHm_v2.0_Chr1g0324351 Rosa chinensis HOM05D004510 ORTHO05D005302 3.3e-22 109.8 64 75.0
RcHm_v2.0_Chr5g0040971 Rosa chinensis HOM05D004510 ORTHO05D005302 6.4e-18 95.5 49 85.7
Gohir.D06G132050 Gossypium hirsutum HOM05D004510 ORTHO05D005302 7.1e-17 92.0 45 86.7
Gohir.D11G083850 Gossypium hirsutum HOM05D004510 ORTHO05D005302 1.5e-14 84.3 42 85.7
Pp3c2_38440 Physcomitrium patens HOM05D004510 ORTHO05D005302 1.5e-11 74.3 99 44.4
Pp3c17_10 Physcomitrium patens HOM05D004510 ORTHO05D005302 6.4e-10 68.9 94 43.6
Pp3c23_90 Physcomitrium patens HOM05D004510 ORTHO05D005302 6.4e-10 68.9 94 43.6
Pp3c26_15780 Physcomitrium patens HOM05D004510 ORTHO05D005302 4.6e-08 62.8 95 42.1


User provided reference genes

Program Settings