Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3234.2 Carica papaya HOM05D005401 ORTHO05D006582 2.6e-46 188.3 92 100.0
Cpa.g.c33663 Carica papaya HOM05D005401 ORTHO05D006582 1.4e-28 129.4 66 87.9
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 9.1e-28 126.7 67 88.1
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 9.1e-28 126.7 67 88.1
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 2.0e-27 125.6 67 86.6
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 2.0e-27 125.6 67 86.6
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 2.7e-27 125.2 67 85.1
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 7.7e-27 123.6 67 86.6
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 1.0e-26 123.2 67 85.1
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 1.3e-26 122.9 67 82.1
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 5.0e-26 120.9 67 85.1
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 5.0e-26 120.9 67 80.6
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 8.5e-26 120.2 67 82.1
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 1.1e-25 119.8 67 82.1
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 1.1e-25 119.8 67 80.6
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 1.1e-25 119.8 67 82.1
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 1.9e-25 119.0 67 82.1
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 1.9e-25 119.0 67 83.6
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 1.9e-25 119.0 67 79.1
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 2.5e-25 118.6 67 77.6
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 4.2e-25 117.9 67 80.6
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 4.2e-25 117.9 67 80.6
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 4.2e-25 117.9 67 82.1
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 5.5e-25 117.5 67 77.6
ClCG01G015490 Citrullus lanatus HOM05D005401 ORTHO05D006582 5.5e-25 117.5 67 77.6
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 5.5e-25 117.5 67 79.1
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 5.5e-25 117.5 85 68.2
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 5.5e-25 117.5 67 82.1
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 5.5e-25 117.5 67 79.1
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 5.5e-25 117.5 67 79.1
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 7.2e-25 117.1 67 79.1
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 7.2e-25 117.1 67 79.1
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 7.2e-25 117.1 68 77.9
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 9.4e-25 116.7 67 80.6
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 1.2e-24 116.3 66 80.3
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 1.2e-24 116.3 67 77.6
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 1.6e-24 115.9 67 77.6
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 2.1e-24 115.5 67 82.1
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 2.7e-24 115.2 67 79.1
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 4.7e-24 114.4 66 77.3
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 6.1e-24 114.0 67 77.6
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 6.1e-24 114.0 67 79.1
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 1.0e-23 113.2 67 77.6
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 1.0e-23 113.2 66 77.3
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 1.0e-23 113.2 67 76.1
Actinidia08420 Actinidia chinensis HOM05D005401 ORTHO05D006582 1.4e-23 112.8 67 77.6
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 2.3e-23 112.1 67 76.1
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 3.0e-23 111.7 67 77.6
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 3.0e-23 111.7 69 75.4
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 4.0e-23 111.3 67 74.6
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 4.0e-23 111.3 67 77.6
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 4.0e-23 111.3 67 77.6
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 5.2e-23 110.9 67 77.6
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 5.2e-23 110.9 66 74.2
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 5.2e-23 110.9 67 74.6
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 6.8e-23 110.5 67 73.1
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 8.8e-23 110.2 67 71.6
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 1.2e-22 109.8 67 71.6
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 1.2e-22 109.8 67 71.6
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 1.2e-22 109.8 67 71.6
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 1.2e-22 109.8 67 73.1
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 1.2e-22 109.8 67 71.6
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 1.5e-22 109.4 67 71.6
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 1.5e-22 109.4 67 71.6
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 2.0e-22 109.0 67 70.1
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 2.0e-22 109.0 67 70.1
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 2.0e-22 109.0 67 74.6
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 2.6e-22 108.6 67 70.1
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 3.4e-22 108.2 67 70.1
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 4.4e-22 107.8 67 76.1
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 7.5e-22 107.1 67 71.6
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 9.8e-22 106.7 67 71.6
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.3e-21 106.3 66 72.7
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 2.8e-21 105.1 66 72.7
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 2.8e-21 105.1 66 72.7
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 2.8e-21 105.1 66 72.7
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 2.8e-21 105.1 66 72.7
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 4.8e-21 104.4 65 72.3
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 6.3e-21 104.0 67 68.7
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 2.4e-20 102.1 67 67.2
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 4.1e-20 101.3 67 70.1
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 7.0e-20 100.5 67 67.2
TPR.G37327 Trifolium pratense HOM05D005401 ORTHO05D006582 7.0e-20 100.5 67 68.7
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 2.0e-19 99.0 67 67.2
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 2.0e-19 99.0 67 64.2
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 2.0e-19 99.0 67 64.2
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 2.7e-19 98.6 67 67.2
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 2.7e-19 98.6 66 71.2
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 3.5e-19 98.2 67 67.2
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 5.9e-19 97.4 67 65.7
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 7.7e-19 97.1 67 62.7
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 1.7e-18 95.9 67 65.7
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 5.0e-18 94.4 67 62.7
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 6.5e-18 94.0 67 64.2
SEGI_26195 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 8.5e-18 93.6 67 62.7
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 1.9e-17 92.4 66 59.1
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 2.5e-17 92.0 85 54.1
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 2.5e-17 92.0 85 54.1
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 3.2e-17 91.7 67 59.7
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 3.2e-17 91.7 67 59.7
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 3.2e-17 91.7 67 61.2
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 5.5e-17 90.9 67 61.2
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 1.2e-16 89.7 68 61.8
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 1.2e-16 89.7 66 59.1
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 1.6e-16 89.4 67 59.7
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 3.6e-16 88.2 68 61.8
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 8.0e-16 87.0 88 54.5
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 1.4e-15 86.3 68 60.3
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 6.8e-15 84.0 66 54.5
HanXRQChr04g0116511 Helianthus annuus HOM05D005401 ORTHO05D006582 1.3e-13 79.7 115 38.3
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 1.3e-13 79.7 67 55.2
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 6.3e-13 77.4 66 51.5
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 6.3e-13 77.4 66 51.5
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 4.1e-12 74.7 67 52.2
HanXRQChr04g0116501 Helianthus annuus HOM05D005401 ORTHO05D006582 7.0e-12 73.9 39 76.9
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 1.6e-11 72.8 70 48.6
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 3.6e-08 61.6 45 62.2


User provided reference genes

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